CsaV3_6G051660 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGAAAACTTATTAACTTTAGGGTTTGGGCCAATTGCATAAAAAAATTGGCATGTATATAAAGAAGAGGAGAACTAGGGTTTTCGTTCTGTCTTAGCCGCAGAAACCCTCCATCTCCGAGAAAGCACCACACGGAGCATCCATGGTTACTTTCAGGGTAAAGCTTCCTTCTCTGAATCTCAACTCTCCCAGGCATAACGTTTGCAACATAAGTGAATGGAACTGAGTCTAATTCCTCTATCATTCTCTTCGTCTGTGTGTTTTCAATGTACGGAGCCATGGCACTGATTGTGTAATTTTCTGATGATGCGTTTTTTTTTTTTTTTTTTTGCAGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCTACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTTAGTTTTATTTTCTGTCTGCCGTCATTTTCCTTGTGGCATTGCTTGAATAGTGTTATTATGTTCTCTGGCTAATCGATTAACAAACTAGAGATTCGATTAGTTTATTGAAAGTGTTAGCTGAACCCTAGTTGCTCTGTTTTTCCTTTTGCTGATTTGTTTTAGGTATTTTCTGCGGAAGCTGAAGAAAGTAAAGAAGAGCAATGGTCAGGTGCTCGCTATCAACGAGGTAAAGTGATTTTGTCTCATACCCCTTCTCATACACCTCATTCTTCCACTTAGAATGACCTAAAATTGCTATGCCGGATATTTGTCTGATCATCGATGTAGGTGACCTTATGTTGGCTCACATAGTAAATGCACGATCACATTGTATGAAAAAGATATCAGGCGTTGAGCTGAACTTGATATTTTTTGAATAACTTGTTACTGTGATTAACTTCATGTTGATTAGCATCTCATTCAATATGCAATCTCCCTATACCATTAATGCACCCCAATTCTTGATGAAATAAACCGTGGCATGACTAGTGGCTTTGGCTTCTAAGTTGTGTTTGGTACTATTTGATTATTATTTGAATCTGTTTTCTGGATTGGGTTGCTAAGTCCTAACATATGCATTAAATCATTAGCTTTTCTTTTCCATTTGGGTTGTTCTCATGGAATTGTCATCGTCTTTAGATCTTTGAGAAGAACCCAACAAAGATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATACCACAACATGTACAAGGAGTACAGAGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACACTGAAATGGCTTCTCGCCATAGGGTTAGGCATCCTTGCATCCAAATTATCAAGACAGCAACCGTCCCAGCCAAGCTTTGCAAGAGGGAAAGCACAAAGCAATTCCATGACTCCAAGATCAAATTCCCCTTGGTTTTCAAGACAGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCCTCAAGACCCAATTTGTTTATGTAATTTGGTTGTTCAAGGAATGAGAAAAAGTGACCCGAGTTGTCTTATTTTGAAATGTTCGGTAGAGACCTTCGTATCAGCGGTTCTTCAATGTTTATTTTGTTTTTACTATATGTGGGATCAGACTTTAAATTTTTGGGTTTATTGCCATGTCTTTTGGTTTCTTATGGAAGTATATCACCTTATGAAGTCTTAATATGGATATCCATATGGTTTTTCAGTGGCTATCTGGTGATAGAAATAGTACGACCAATACTGGATTCTTGAAATGTTGGGAACTATGGTAGTTTTATTTAATACGTGGGTTTTTCTTTTTCATTACAAGTTCAGGTTTCAAGGAGGATAAATTTTATAAACATTGTTGTTCTCTTTAACTATGGAGACTTCTTTTGTGATGCTATTTAAGAAAAGAAATTTCTATTTCAATCTAAAAAATCATCACTGTTTTTAGAGTTCG ATGGTTACTTTCAGGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCTACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGCTGAAGAAAGTAAAGAAGAGCAATGGTCAGGTGCTCGCTATCAACGAGATCTTTGAGAAGAACCCAACAAAGATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATACCACAACATGTACAAGGAGTACAGAGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACACTGAAATGGCTTCTCGCCATAGGGTTAGGCATCCTTGCATCCAAATTATCAAGACAGCAACCGTCCCAGCCAAGCTTTGCAAGAGGGAAAGCACAAAGCAATTCCATGACTCCAAGATCAAATTCCCCTTGGTTTTCAAGACAGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCCTCAAGACCCAATTTGTTTATGTAA ATGGTTACTTTCAGGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCTACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGCTGAAGAAAGTAAAGAAGAGCAATGGTCAGGTGCTCGCTATCAACGAGATCTTTGAGAAGAACCCAACAAAGATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATACCACAACATGTACAAGGAGTACAGAGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACACTGAAATGGCTTCTCGCCATAGGGTTAGGCATCCTTGCATCCAAATTATCAAGACAGCAACCGTCCCAGCCAAGCTTTGCAAGAGGGAAAGCACAAAGCAATTCCATGACTCCAAGATCAAATTCCCCTTGGTTTTCAAGACAGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCCTCAAGACCCAATTTGTTTATGTAA MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM* Homology
BLAST of CsaV3_6G051660 vs. NCBI nr
Match: XP_004134633.1 (60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical protein Csa_003074 [Cucumis sativus]) HSP 1 Score: 367.5 bits (942), Expect = 6.7e-98 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. NCBI nr
Match: XP_008439644.1 (PREDICTED: 60S ribosomal protein L18a [Cucumis melo] >KAA0052550.1 60S ribosomal protein L18a [Cucumis melo var. makuwa] >TYK13275.1 60S ribosomal protein L18a [Cucumis melo var. makuwa]) HSP 1 Score: 366.3 bits (939), Expect = 1.5e-97 Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. NCBI nr
Match: XP_022926366.1 (60S ribosomal protein L18a-like [Cucurbita moschata]) HSP 1 Score: 365.2 bits (936), Expect = 3.3e-97 Identity = 176/178 (98.88%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. NCBI nr
Match: XP_023002909.1 (60S ribosomal protein L18a-like [Cucurbita maxima] >KAG6594475.1 60S ribosomal protein L18a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026472.1 60S ribosomal protein L18a [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 365.2 bits (936), Expect = 3.3e-97 Identity = 176/178 (98.88%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. NCBI nr
Match: XP_038880985.1 (60S ribosomal protein L18a [Benincasa hispida]) HSP 1 Score: 364.4 bits (934), Expect = 5.7e-97 Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot
Match: Q9ATF5 (60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 1.2e-92 Identity = 163/178 (91.57%), Postives = 170/178 (95.51%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot
Match: P51418 (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2) HSP 1 Score: 333.2 bits (853), Expect = 1.8e-90 Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot
Match: Q9LUD4 (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 2.0e-89 Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot
Match: Q943F3 (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE=1 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 3.5e-89 Identity = 158/178 (88.76%), Postives = 165/178 (92.70%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot
Match: Q8L7K0 (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 1.5e-87 Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL
Match: A0A0A0KIJ4 (60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1) HSP 1 Score: 367.5 bits (942), Expect = 3.2e-98 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL
Match: A0A5D3CNU8 (60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008940 PE=3 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 7.2e-98 Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL
Match: A0A1S3AZ74 (60S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103484376 PE=3 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 7.2e-98 Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL
Match: A0A6J1KRT5 (60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111496677 PE=3 SV=1) HSP 1 Score: 365.2 bits (936), Expect = 1.6e-97 Identity = 176/178 (98.88%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL
Match: A0A6J1EEQ6 (60S ribosomal protein L18a-like OS=Cucurbita moschata OX=3662 GN=LOC111433535 PE=3 SV=1) HSP 1 Score: 365.2 bits (936), Expect = 1.6e-97 Identity = 176/178 (98.88%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. TAIR 10
Match: AT2G34480.1 (Ribosomal protein L18ae/LX family protein ) HSP 1 Score: 333.2 bits (853), Expect = 1.3e-91 Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. TAIR 10
Match: AT3G14600.1 (Ribosomal protein L18ae/LX family protein ) HSP 1 Score: 329.7 bits (844), Expect = 1.4e-90 Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. TAIR 10
Match: AT1G29965.1 (Ribosomal protein L18ae/LX family protein ) HSP 1 Score: 323.6 bits (828), Expect = 1.0e-88 Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0
BLAST of CsaV3_6G051660 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 ) HSP 1 Score: 320.1 bits (819), Expect = 1.1e-87 Identity = 153/172 (88.95%), Postives = 163/172 (94.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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