CsaV3_6G051660 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G051660
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	60S ribosomal protein L18a
Location	chr6: 30041200 .. 30043124 (-)
RNA-Seq Expression	CsaV3_6G051660
Synteny	CsaV3_6G051660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAACTTATTAACTTTAGGGTTTGGGCCAATTGCATAAAAAAATTGGCATGTATATAAAGAAGAGGAGAACTAGGGTTTTCGTTCTGTCTTAGCCGCAGAAACCCTCCATCTCCGAGAAAGCACCACACGGAGCATCCATGGTTACTTTCAGGGTAAAGCTTCCTTCTCTGAATCTCAACTCTCCCAGGCATAACGTTTGCAACATAAGTGAATGGAACTGAGTCTAATTCCTCTATCATTCTCTTCGTCTGTGTGTTTTCAATGTACGGAGCCATGGCACTGATTGTGTAATTTTCTGATGATGCGTTTTTTTTTTTTTTTTTTTGCAGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCTACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTTAGTTTTATTTTCTGTCTGCCGTCATTTTCCTTGTGGCATTGCTTGAATAGTGTTATTATGTTCTCTGGCTAATCGATTAACAAACTAGAGATTCGATTAGTTTATTGAAAGTGTTAGCTGAACCCTAGTTGCTCTGTTTTTCCTTTTGCTGATTTGTTTTAGGTATTTTCTGCGGAAGCTGAAGAAAGTAAAGAAGAGCAATGGTCAGGTGCTCGCTATCAACGAGGTAAAGTGATTTTGTCTCATACCCCTTCTCATACACCTCATTCTTCCACTTAGAATGACCTAAAATTGCTATGCCGGATATTTGTCTGATCATCGATGTAGGTGACCTTATGTTGGCTCACATAGTAAATGCACGATCACATTGTATGAAAAAGATATCAGGCGTTGAGCTGAACTTGATATTTTTTGAATAACTTGTTACTGTGATTAACTTCATGTTGATTAGCATCTCATTCAATATGCAATCTCCCTATACCATTAATGCACCCCAATTCTTGATGAAATAAACCGTGGCATGACTAGTGGCTTTGGCTTCTAAGTTGTGTTTGGTACTATTTGATTATTATTTGAATCTGTTTTCTGGATTGGGTTGCTAAGTCCTAACATATGCATTAAATCATTAGCTTTTCTTTTCCATTTGGGTTGTTCTCATGGAATTGTCATCGTCTTTAGATCTTTGAGAAGAACCCAACAAAGATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATACCACAACATGTACAAGGAGTACAGAGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACACTGAAATGGCTTCTCGCCATAGGGTTAGGCATCCTTGCATCCAAATTATCAAGACAGCAACCGTCCCAGCCAAGCTTTGCAAGAGGGAAAGCACAAAGCAATTCCATGACTCCAAGATCAAATTCCCCTTGGTTTTCAAGACAGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCCTCAAGACCCAATTTGTTTATGTAATTTGGTTGTTCAAGGAATGAGAAAAAGTGACCCGAGTTGTCTTATTTTGAAATGTTCGGTAGAGACCTTCGTATCAGCGGTTCTTCAATGTTTATTTTGTTTTTACTATATGTGGGATCAGACTTTAAATTTTTGGGTTTATTGCCATGTCTTTTGGTTTCTTATGGAAGTATATCACCTTATGAAGTCTTAATATGGATATCCATATGGTTTTTCAGTGGCTATCTGGTGATAGAAATAGTACGACCAATACTGGATTCTTGAAATGTTGGGAACTATGGTAGTTTTATTTAATACGTGGGTTTTTCTTTTTCATTACAAGTTCAGGTTTCAAGGAGGATAAATTTTATAAACATTGTTGTTCTCTTTAACTATGGAGACTTCTTTTGTGATGCTATTTAAGAAAAGAAATTTCTATTTCAATCTAAAAAATCATCACTGTTTTTAGAGTTCG

mRNA sequence

ATGGTTACTTTCAGGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCTACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGCTGAAGAAAGTAAAGAAGAGCAATGGTCAGGTGCTCGCTATCAACGAGATCTTTGAGAAGAACCCAACAAAGATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATACCACAACATGTACAAGGAGTACAGAGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACACTGAAATGGCTTCTCGCCATAGGGTTAGGCATCCTTGCATCCAAATTATCAAGACAGCAACCGTCCCAGCCAAGCTTTGCAAGAGGGAAAGCACAAAGCAATTCCATGACTCCAAGATCAAATTCCCCTTGGTTTTCAAGACAGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCCTCAAGACCCAATTTGTTTATGTAA

Coding sequence (CDS)

ATGGTTACTTTCAGGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCTACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGCTGAAGAAAGTAAAGAAGAGCAATGGTCAGGTGCTCGCTATCAACGAGATCTTTGAGAAGAACCCAACAAAGATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATACCACAACATGTACAAGGAGTACAGAGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACACTGAAATGGCTTCTCGCCATAGGGTTAGGCATCCTTGCATCCAAATTATCAAGACAGCAACCGTCCCAGCCAAGCTTTGCAAGAGGGAAAGCACAAAGCAATTCCATGACTCCAAGATCAAATTCCCCTTGGTTTTCAAGACAGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCCTCAAGACCCAATTTGTTTATGTAA

Protein sequence

MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM*

Homology

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BLAST of CsaV3_6G051660 vs. NCBI nr
Match: XP_004134633.1 (60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical protein Csa_003074 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 6.7e-98
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

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BLAST of CsaV3_6G051660 vs. NCBI nr
Match: XP_008439644.1 (PREDICTED: 60S ribosomal protein L18a [Cucumis melo] >KAA0052550.1 60S ribosomal protein L18a [Cucumis melo var. makuwa] >TYK13275.1 60S ribosomal protein L18a [Cucumis melo var. makuwa])

HSP 1 Score: 366.3 bits (939), Expect = 1.5e-97
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. NCBI nr
Match: XP_022926366.1 (60S ribosomal protein L18a-like [Cucurbita moschata])

HSP 1 Score: 365.2 bits (936), Expect = 3.3e-97
Identity = 176/178 (98.88%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 24  MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 83

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH
Sbjct: 84  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 143

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 144 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 201

[Close]

BLAST of CsaV3_6G051660 vs. NCBI nr
Match: XP_023002909.1 (60S ribosomal protein L18a-like [Cucurbita maxima] >KAG6594475.1 60S ribosomal protein L18a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026472.1 60S ribosomal protein L18a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365.2 bits (936), Expect = 3.3e-97
Identity = 176/178 (98.88%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

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BLAST of CsaV3_6G051660 vs. NCBI nr
Match: XP_038880985.1 (60S ribosomal protein L18a [Benincasa hispida])

HSP 1 Score: 364.4 bits (934), Expect = 5.7e-97
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

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BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot
Match: Q9ATF5 (60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.2e-92
Identity = 163/178 (91.57%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGR LPSE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRES+KQFH+SKIKFPLV + +RPP+RKLKT YKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot
Match: P51418 (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 333.2 bits (853), Expect = 1.8e-90
Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+ VRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot
Match: Q9LUD4 (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.0e-89
Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 4   FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63
           FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAI
Sbjct: 4   FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCI 123
           NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MYTEMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 124 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           QIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+ VRPP+RKLKTTYKAS+PNLFM
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot
Match: Q943F3 (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE=1 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.5e-89
Identity = 158/178 (88.76%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGR LP+  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV  KLCKR++TKQFH S IKFPLV++ VRPPTRKLKTT+KASRPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot
Match: Q8L7K0 (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.5e-87
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+ VRPPTRKLKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL
Match: A0A0A0KIJ4 (60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.2e-98
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL
Match: A0A5D3CNU8 (60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008940 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.2e-98
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL
Match: A0A1S3AZ74 (60S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103484376 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.2e-98
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL
Match: A0A6J1KRT5 (60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111496677 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.6e-97
Identity = 176/178 (98.88%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL
Match: A0A6J1EEQ6 (60S ribosomal protein L18a-like OS=Cucurbita moschata OX=3662 GN=LOC111433535 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.6e-97
Identity = 176/178 (98.88%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 24  MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 83

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH
Sbjct: 84  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 143

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 144 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 201

[Close]

BLAST of CsaV3_6G051660 vs. TAIR 10
Match: AT2G34480.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-91
Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+ VRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. TAIR 10
Match: AT3G14600.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-90
Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 4   FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63
           FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAI
Sbjct: 4   FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCI 123
           NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MYTEMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 124 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           QIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+ VRPP+RKLKTTYKAS+PNLFM
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. TAIR 10
Match: AT1G29965.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 323.6 bits (828), Expect = 1.0e-88
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+ VRPPTRKLKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of CsaV3_6G051660 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-87
Identity = 153/172 (88.95%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 7   HQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEI 66
           HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+LAINEI
Sbjct: 141 HQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEI 200

Query: 67  FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQII 126
           FEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR PCIQII
Sbjct: 201 FEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQII 260

Query: 127 KTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 179
           KTATVPA LCKRESTKQFH+SKIKFPLVF+ VRPPTRKLKTT+KA++PNLFM
Sbjct: 261 KTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

The following BLAST results are available for this feature:

BLAST of CsaV3_6G051660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134633.1	6.7e-98	100.00	60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical protein Cs...	[more]
XP_008439644.1	1.5e-97	99.44	PREDICTED: 60S ribosomal protein L18a [Cucumis melo] >KAA0052550.1 60S ribosomal...	[more]
XP_022926366.1	3.3e-97	98.88	60S ribosomal protein L18a-like [Cucurbita moschata]	[more]
XP_023002909.1	3.3e-97	98.88	60S ribosomal protein L18a-like [Cucurbita maxima] >KAG6594475.1 60S ribosomal p...	[more]
XP_038880985.1	5.7e-97	98.88	60S ribosomal protein L18a [Benincasa hispida]	[more]

BLAST of CsaV3_6G051660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ATF5	1.2e-92	91.57	60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1	[more]
P51418	1.8e-90	89.89	60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=...	[more]
Q9LUD4	2.0e-89	90.29	60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=...	[more]
Q943F3	3.5e-89	88.76	60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE...	[more]
Q8L7K0	1.5e-87	87.08	60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=...	[more]

BLAST of CsaV3_6G051660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIJ4	3.2e-98	100.00	60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1	[more]
A0A5D3CNU8	7.2e-98	99.44	60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3AZ74	7.2e-98	99.44	60S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103484376 PE=3 SV=1	[more]
A0A6J1KRT5	1.6e-97	98.88	60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111496677 PE=3 SV=1	[more]
A0A6J1EEQ6	1.6e-97	98.88	60S ribosomal protein L18a-like OS=Cucurbita moschata OX=3662 GN=LOC111433535 PE...	[more]

BLAST of CsaV3_6G051660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34480.1	1.3e-91	89.89	Ribosomal protein L18ae/LX family protein	[more]
AT3G14600.1	1.4e-90	90.29	Ribosomal protein L18ae/LX family protein	[more]
AT1G29965.1	1.0e-88	87.08	Ribosomal protein L18ae/LX family protein	[more]
AT1G29970.2	1.1e-87	88.95	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.10		coord: 72..147 e-value: 1.2E-41 score: 142.9
None	No IPR available	GENE3D	3.10.20.10		coord: 1..71 e-value: 3.3E-38 score: 131.3
None	No IPR available	PANTHER	PTHR10052:SF45	60S RIBOSOMAL PROTEIN L18A	coord: 138..178
None	No IPR available	PANTHER	PTHR10052:SF45	60S RIBOSOMAL PROTEIN L18A	coord: 1..137
None	No IPR available	SUPERFAMILY	160374	RplX-like	coord: 71..146
IPR021138	60S ribosomal protein L18a/ L20, eukaryotes	PIRSF	PIRSF002190	Ribosomal_L18a	coord: 1..178 e-value: 1.6E-72 score: 240.5
IPR023573	Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A	PFAM	PF01775	Ribosomal_L18A	coord: 7..128 e-value: 1.3E-54 score: 183.4
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 1..137 coord: 138..178
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	HAMAP	MF_00273	Ribosomal_L18Ae	coord: 6..69 score: 24.336386

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G051660.1	CsaV3_6G051660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome