CsaV3_6G047990 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G047990
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 28233456 .. 28233653 (-)
RNA-Seq Expression	CsaV3_6G047990
Synteny	CsaV3_6G047990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACAAAACTCAGAAACACATTACCTGGCAGTAAGCATATCCAGATCCAGAGTCATCGGCAGAAATGAAGGGAAAGAGCAAGAGATACGGCTACAAAAACAGCAGCAAACAGAGGCAATCCAGTTGGTGGCCCCAAGTAGTGAAAATTCCTTTGACACTGCTGTTTCTCGTCCAGAGTTTTACAATCATTGA

mRNA sequence

ATGGAAGAACAAAACTCAGAAACACATTACCTGGCAGTAAGCATATCCAGATCCAGAGTCATCGGCAGAAATGAAGGGAAAGAGCAAGAGATACGGCTACAAAAACAGCAGCAAACAGAGGCAATCCAGTTGGTGGCCCCAAGTAGTGAAAATTCCTTTGACACTGCTGTTTCTCGTCCAGAGTTTTACAATCATTGA

Coding sequence (CDS)

ATGGAAGAACAAAACTCAGAAACACATTACCTGGCAGTAAGCATATCCAGATCCAGAGTCATCGGCAGAAATGAAGGGAAAGAGCAAGAGATACGGCTACAAAAACAGCAGCAAACAGAGGCAATCCAGTTGGTGGCCCCAAGTAGTGAAAATTCCTTTGACACTGCTGTTTCTCGTCCAGAGTTTTACAATCATTGA

Protein sequence

MEEQNSETHYLAVSISRSRVIGRNEGKEQEIRLQKQQQTEAIQLVAPSSENSFDTAVSRPEFYNH*

Homology

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BLAST of CsaV3_6G047990 vs. NCBI nr
Match: KAE8647632.1 (hypothetical protein Csa_003174 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MEEQNSETHYLAVSISRSRVIGRNEGKEQEIRLQKQQQTEAIQLVAPSSENSFDTAVSRP 60
          MEEQNSETHYLAVSISRSRVIGRNEGKEQEIRLQKQQQTEAIQLVAPSSENSFDTAVSRP
Sbjct: 1  MEEQNSETHYLAVSISRSRVIGRNEGKEQEIRLQKQQQTEAIQLVAPSSENSFDTAVSRP 60

Query: 61 EFYNH 66
          EFYNH
Sbjct: 61 EFYNH 65

The following BLAST results are available for this feature:

BLAST of CsaV3_6G047990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647632.1	4.3e-26	100.00	hypothetical protein Csa_003174 [Cucumis sativus]	[more]

BLAST of CsaV3_6G047990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G047990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G047990 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G047990.1	CsaV3_6G047990.1	mRNA