CsaV3_6G040310 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G040310
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	60S ribosomal protein L24
Location	chr6: 23264027 .. 23265896 (+)
RNA-Seq Expression	CsaV3_6G040310
Synteny	CsaV3_6G040310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGCATTATGGTGATTAAATTACAATAAAGGGGTTATCAAACAAACCTCAAACTATACATATCGTTTCCCTCGATAGATTTAGTTTCTAGGGTTTCGGCGACCACGAAGAAACGGAGGAGTAACAACTGCAGCCGCCACCATGGTGTTGAAGTTAGTCTCTATGGCAGCTCTTTCTGATTCATAGTTGTATTGATTTCATTTAGTTTTCCGCACTCCTTTTAAGTTTCTTTCGTAATCGATGATTGCATCCATTATGGCGAAATAGAGGTGGATCAATGATACTATCTTTGAAACATATGGGTTCTTTCTTAGGTGAATTTGATATGTAGGTCAGTAGGCTCGTTACGATTGTTGGGTTTGAAGAAGTAGTGGCTTATACTGTGAGAATGTGATGACTTGTGGTGGTAGATATGCGTATTTCGTTATTGATTGATTCTGAAATGTAATCTGCTTTGGTAGGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGTAGAGGAATCAGATTTGTCCGTGCTGATTCACAGGTAATTAACCTGTCCAGCCACTGATTGAGTTGGAGTTGTAACTGGATAATTTTATTTCTCTCCTTTCTTTTGGTATGATTTTACCTGCTGTTTAAATTGTAATCTTGTTTGGATTCACTAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAGAAGGTAAAAAAGGAATTTTAGTTCTGGGAATTTTATTTTTTGTGTATGTTTATAATATTCTGTCATATCGTGTTCTGTTTGCAACAGAGTGATTTGCACATTTAGATCATCATTTCTATGATATCATATCCTGTTTGATAGCTTTGGTTTTGGATGGGTAATTTTAAAACAAAACTATAGGTCTGTGTTAGATCATGATTTTTATCAAAATAGAGGTTTCTGTTTTGTGGAAACACATGCCTAATTATTTACTGTCTTATGCCTTGTTAACCATGATTTTTACTAGATGATTGGGAAATATTTAACGTTTCTTCTCTTTTTATTCGTGTAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGATCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGGTATGTGATTGTTCTAAGTTTGAAATATCATCTATTCTTTAGAAAGGCCAAATGTTGACATTTGATATTTATTAATCAGATATCTTGTGTTTTTCCTTGGGCTGCAGTGAAATTAAGGAGAGAATTAAGAAGACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGCGGTGGCGGTGGAAAACGTTAAACTCTCTATGCTGTAAGCTAAGAAGAGTAGTAAGCTTTTGATTGTCTTTTGAATAGCAAGCCTGAGTAAAAGATAATGTTTGTTTATTTCCAAAATTTTGAATGGATCAATTATTGCATTTATGATGGTACCAATATCAGAGTTCTGCATTTTGTTTCCCTGTTAATTTGCATGATTATGAATGATAACTACTTGACTATGTTCAATAGGGACATGGTTCAAATTTCCATTAAAATTTTATTTGCTTACCTTTTGGATTCATGAAGTATGGATAGAGATTATTTAGGCAACACGGATAGCTGTTGAGCACTCGCATTTGAAGTTTTTGTTTCGAGATTTTGTTTCAACCTGTTTTCGGTTTAACTTTTT

mRNA sequence

ATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGTAGAGGAATCAGATTTGTCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGATCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAGACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGCGGTGGCGGTGGAAAACGTTAA

Coding sequence (CDS)

ATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGTAGAGGAATCAGATTTGTCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGATCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAGACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGCGGTGGCGGTGGAAAACGTTAA

Protein sequence

MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR*

Homology

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BLAST of CsaV3_6G040310 vs. NCBI nr
Match: XP_004143295.1 (60S ribosomal protein L24 [Cucumis sativus] >KGN48224.1 hypothetical protein Csa_003063 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 1.7e-79
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CsaV3_6G040310 vs. NCBI nr
Match: XP_008462521.1 (PREDICTED: 60S ribosomal protein L24 [Cucumis melo] >XP_038881281.1 60S ribosomal protein L24 [Benincasa hispida] >KAA0025300.1 60S ribosomal protein L24 [Cucumis melo var. makuwa] >TYK07368.1 60S ribosomal protein L24 [Cucumis melo var. makuwa])

HSP 1 Score: 305.1 bits (780), Expect = 3.8e-79
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CsaV3_6G040310 vs. NCBI nr
Match: KAG6604377.1 (Sulfite exporter TauE/SafE family protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.0 bits (754), Expect = 3.9e-76
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQ
Sbjct: 489 MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQ 548

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 549 HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 608

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AKTQKTQ K NVGRGAAPKGPKLGGGGGKR
Sbjct: 609 KTKDEKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 652

[Close]

BLAST of CsaV3_6G040310 vs. NCBI nr
Match: XP_022926170.1 (60S ribosomal protein L24-like [Cucurbita moschata] >XP_022977680.1 60S ribosomal protein L24-like [Cucurbita maxima] >XP_023543140.1 60S ribosomal protein L24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 3.9e-76
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AKTQKTQ K NVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CsaV3_6G040310 vs. NCBI nr
Match: XP_022951028.1 (60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal protein L24 [Cucurbita maxima] >XP_023538770.1 60S ribosomal protein L24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.7 bits (753), Expect = 5.1e-76
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAK+QK  GKGNV +GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CsaV3_6G040310 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.4e-75
Identity = 149/163 (91.41%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRF+R DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGK 164
           KTKDEKKAKKAEV +K QK+QGKGNV +GA PKGPK+GGGGGK
Sbjct: 121 KTKDEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of CsaV3_6G040310 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.1e-71
Identity = 144/160 (90.00%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAA-PKGPKLGG 160
           KTKDEKKAKKAEV  K+QK+QGKG++ +G A PKGPKLGG
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of CsaV3_6G040310 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 264.6 bits (675), Expect = 7.4e-70
Identity = 140/164 (85.37%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+Q KGN+ + AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of CsaV3_6G040310 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.4e-67
Identity = 143/165 (86.67%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDI  EA KKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQ-GKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV  K+QK+Q GKG V +G+  KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

[Close]

BLAST of CsaV3_6G040310 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 254.2 bits (648), Expect = 1.0e-66
Identity = 140/165 (84.85%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGR-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N  +  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of CsaV3_6G040310 vs. ExPASy TrEMBL
Match: A0A0A0KHD4 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G449310 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.2e-80
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CsaV3_6G040310 vs. ExPASy TrEMBL
Match: A0A5D3C883 (60S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00880 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CsaV3_6G040310 vs. ExPASy TrEMBL
Match: A0A1S3CH43 (60S ribosomal protein L24 OS=Cucumis melo OX=3656 GN=LOC103500860 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CsaV3_6G040310 vs. ExPASy TrEMBL
Match: A0A6J1IN14 (60S ribosomal protein L24-like OS=Cucurbita maxima OX=3661 GN=LOC111477918 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AKTQKTQ K NVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CsaV3_6G040310 vs. ExPASy TrEMBL
Match: A0A6J1EK93 (60S ribosomal protein L24-like OS=Cucurbita moschata OX=3662 GN=LOC111433352 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AKTQKTQ K NVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CsaV3_6G040310 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 264.6 bits (675), Expect = 5.3e-71
Identity = 140/164 (85.37%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+Q KGN+ + AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of CsaV3_6G040310 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 254.2 bits (648), Expect = 7.1e-68
Identity = 140/165 (84.85%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGR-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N  +  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of CsaV3_6G040310 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-12
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K    +      AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKKIAKIR-----TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

[Close]

BLAST of CsaV3_6G040310 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-12
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K    +      AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKKIAKIR-----TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

The following BLAST results are available for this feature:

BLAST of CsaV3_6G040310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143295.1	1.7e-79	100.00	60S ribosomal protein L24 [Cucumis sativus] >KGN48224.1 hypothetical protein Csa...	[more]
XP_008462521.1	3.8e-79	99.39	PREDICTED: 60S ribosomal protein L24 [Cucumis melo] >XP_038881281.1 60S ribosoma...	[more]
KAG6604377.1	3.9e-76	95.73	Sulfite exporter TauE/SafE family protein 4, partial [Cucurbita argyrosperma sub...	[more]
XP_022926170.1	3.9e-76	95.73	60S ribosomal protein L24-like [Cucurbita moschata] >XP_022977680.1 60S ribosoma...	[more]
XP_022951028.1	5.1e-76	95.73	60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal pro...	[more]

BLAST of CsaV3_6G040310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65743	3.4e-75	91.41	60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1	[more]
Q9FUL4	5.1e-71	90.00	60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1	[more]
Q42347	7.4e-70	85.37	60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2	[more]
P50888	3.4e-67	86.67	60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1	[more]
P38666	1.0e-66	84.85	60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2	[more]

BLAST of CsaV3_6G040310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHD4	8.2e-80	100.00	TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G449310 PE=3 ...	[more]
A0A5D3C883	1.8e-79	99.39	60S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CH43	1.8e-79	99.39	60S ribosomal protein L24 OS=Cucumis melo OX=3656 GN=LOC103500860 PE=3 SV=1	[more]
A0A6J1IN14	1.9e-76	95.73	60S ribosomal protein L24-like OS=Cucurbita maxima OX=3661 GN=LOC111477918 PE=3 ...	[more]
A0A6J1EK93	1.9e-76	95.73	60S ribosomal protein L24-like OS=Cucurbita moschata OX=3662 GN=LOC111433352 PE=...	[more]

BLAST of CsaV3_6G040310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36620.1	5.3e-71	85.37	ribosomal protein L24	[more]
AT3G53020.1	7.1e-68	84.85	Ribosomal protein L24e family protein	[more]
AT2G44860.1	3.2e-12	35.94	Ribosomal protein L24e family protein	[more]
AT2G44860.2	3.2e-12	35.94	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..139
None	No IPR available	GENE3D	6.10.250.1270		coord: 69..140 e-value: 5.4E-22 score: 79.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..164
None	No IPR available	PANTHER	PTHR10792:SF37	60S RIBOSOMAL PROTEIN L24	coord: 1..164
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 6..58
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 8..46 e-value: 5.4E-4 score: 29.3
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 3..64 e-value: 1.6E-33 score: 116.8
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 3..67 e-value: 1.3E-28 score: 99.0
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..164
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 3..56 e-value: 3.01097E-20 score: 76.8422
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 10..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G040310.1	CsaV3_6G040310.1	mRNA