CsaV3_6G037240 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G037240
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ribosome-recycling factor, chloroplastic
Location	chr6: 20961850 .. 20968501 (-)
RNA-Seq Expression	CsaV3_6G037240
Synteny	CsaV3_6G037240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATACTGTATTCATCGTATCCAAACAACCCTTGCTGATAGCAAAAGAAATTCAAAATCAAATATCTTTTTGAATTCTTATCCATAAGTGTGAAGGAGAATTGAATTTGGACAAAGCAATGGCATTCTTTTGAACTTCAAACCATTTTCCTTCCCCCTTATCACCTTCGATTCTTTCATTTCCGTATCCATGGCCACCCCTTTCTCCGCCACCGCCTCTATCCGCCGTTCCCTCTTCCAGAATCCCCCTCCCAAATCCCTCCTCTCACTCCGAGGTACGTCATTCTTCAACCCACAATTTTGCTTCCGCTTTCTACCTTTTCTGTTGGTTTCTTCATCATCATTCATCCCCCAATGCCTCCCCTTCTAGATTATAATGGAGGGTTAAATTGCGTCAAATGCGGCTCCATTACTGCGCATCTTTGTTCATGGAAGTCAGCTTCCAACTACGTCAGGCTCAACCGACAAGCCCTAGTGATTTCTACCCAACTCTCTGTTTCTGGGAATGTGTTCAAAAACAGGCATGTGTTTTACTTTTATTTCGTTTACTTTCTTACGCGCCTTGTGGATTGTGTGTACCTCCTTGTGAACTGGTGTGAATTTGAACGTCCTCTGTAGTGAAGTGGTAACGTGGGGCAGCACTCTTCAAACATACAGAGCATTTTGCTTTTGCATTTGTCTTATTGCCACGTGAAGTTGATTTTGGTAGTTTTTTCAGTTGTGTTGATCTTATATTGCCTCTGAATTTTTGTTTTTAGAAGGTTAGTTGTGAGGGCTGCAACAATCGAAGAAATTGAAGCAGAGAAAACATTGATCGAGAAAGATGTAGTAAGTTCATATTTTCATTTTTGTGGAGACTTGCTGTGTATTATACTTAAGCAAGCTGACGCTAAGAAATAATCGTGCGAATGACCATCCAATTATTCTCCAGAAAGCAAGAATGGAAAAGACCATCGATACTGTTCGGTCTAATTTCAATTCAATTAGGACTGGGAGATCAAATCCTGCCATGCTTGATAAGATTGAGGTATAGGGCAATTCTTAAATTTGGCTGGTTAGTGGATAGTTGCTTCATTATGAGACGAGTAACATGCTAATGATTTGTGTTATATACAAAACCATCTGTTGCTTTCATGAATTTTCAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATCGCTCAAATTAGTACACCTGATGCAAGCTCACTCTTGGTCCAGCCATATGATAAATCCAGGTATTCAATGTGCTAATTGGCTGAGTTGAGTGTATTTAGGAACCTTTAGGGATATGTTGGTTGGTGCACCCTCAGGCACTATATGGCTTCACTTTTTCCAAATTCTTGTAGTTTTAGAATTGCTATAAAACAATACATGGTGGATGTTACGATGACCCTTTACCACGAATCCTTGAAATCGAGGATCTTTAGGATCTTCCTTGTTCCTTTGTCCATTTCAAATTTGTAGATATGATTGTTCCTAGCTTGCTTTTCTTTTAGAGACCTACTCAAGGGCTTCAAATTTTTGTCATCGTAATTTTTGTTTTTATGAATAAGAAGGTTTCACATTGCAGACAATTTTTTTGGAGCTTTTCAATCTTCTCTAATTTTTACTTACTGGTTGAGATTGCTGTGGACATAAACAGCCTCTTATTATTAGCTATAGAATGATGCCATCCAGCTGAACAGTGTAATGCATTTCTATAATGTCTCTTGGCAATCAGCATTAACTCTTAACGAGTCGTCATCTTCAGCTTAAAGTCAATAGAGAAGGCCATAGTCAACTCTGACTTGGGAATGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACGTCCGAAAGAAGAAAGGTATTTTCCTTTGTATTTGCTAAGAATTTCCAACTAGATGTACCATTAAGCCTTTTCTATTTTTGTTTTGTTTAATGCCAATTATGTAAGAACCAGTAGAAAACATTTTTTTCTCCATATCTTTTGAACGTTCATCTTAAGATTCAGTTCTATAGTTCCTTGTCTAGTCTGATCATGTTATAGTGAAAGAAGCAGTCTGCAATTATGCCTTGCAGAAGATTGCTGTAAAACTCTTGTGGTTTCGTACCTCACTCATGAAATTAAAGAGACTCACTTACATTATTTAAATTGCCTGCCTTGTTGAGATTAGAGTAGGTGGTCAGGTGGTGAATGTTATATTTTTCACTTTACCTAAGAAGCACTGACACTTAAGTTTTCTTAAACTGTCCATGTTGGACACATATTGGGCATTTCTTAGCATAATAGTTGATAACTTGTTAAGCATACTAAATAGCCACATAATAATATATGAGTATAGGACAAAAATAATTCATGTAGAAGAATGTATGAGTTAAAACTCATGCTATACCCTGATACGAGTCCTCTAAATAAATAGAATAAGTAGGCAAAATAATAACAGCCTTCAACTTAACTGACTAAATAATCCTCAACTAATTACATATAATACGCCTCCTCAAGTTGGGGTGTGAATATCTTAAGCCCCCAACTTGCTTAAAATGAAGAAAATAAGGATGAGGCTAATGTCTTAGTGGAAATGTCAGTTAGCTGTAAATTGGAACGTTCAGAGAATAACTTAAGGAAATTCTACAAGTTTTTCATGAACCAAGTGATAGTCAATCTTTATGTGCTTGGTGTGCTCGTGAAAGATTGGGTTTGAAGCTATGGAGATAGTGGCTTGATTGTCTCAGTATGTGAGAGCTGGAAAAATATGGTCAAGATGTAAGTCTCCAAGAACCTGATTAATCCAAACCAATTCTTTGGTTACTACTGCAAGGGCATGATATTGAACCCAGCTGATGAACGTGAGATTGTCCCTTGCTTGTTTGACTTCCAAGATTTCAAGGATTCTCCAAAGAAAACACTGAAGTCTGTGACTGATTTTCTGGTATCTACACATACACCCCAGTTAGCATCCTGATAGAAGACCAATAAGATGTGTTCTTATTCAATTGATATAAACTCACTATTACAGAGAAAAATTGATGTATACCAATTCTGAGATGAAAATGCAGAAATTAACTAAGAACAAGTAAAATACTACCTTCTCTGCCTATCCTCTCTCTCAAGGAAGAGTGCAGAAAAACTACCCACAAAACTGATCCCCCCTTTCTTCCCCCCCCAACTTCTTCCTATTTATAACCATCTAACTGCCTACATAACTAATTACCCTTATACCTCTGCCCTATACTAGTCTAGGTATCTAACACATCCACATGCACATGCACCCCAGTTAGCATCCACAAAGGATTTAGGCTGGAAGTTAGAAGTTGGCTTCAATAAAACCACTTGGATAGGTGCCTTCTTCAGGTGACGAAGAATACGGTGTGCAACATTCATATGTTGAGTAGTAGATTTTTGAAGAACTTGACTTAGGCAGTGGACTGAAAAAGAAATATAAGGTTGAGAGATTTGAAGGTGTAAGAAACGTCCAATCAATCTTTGGTAACAAGATGCTTCATCAAGCGATAAATTTGTGCCACTGTCCTAAGAAAGATGAAAATTGGGGGGATCCATGAGCAGCCTTTGTTTCAAGGAAGTTAGTATCTTCAAGTATTTGCAATTGATACTTTCTTTGTGAGAGAGATAATCCTTGTTTGGATTGGGAAATCTCCAGCCCAAGAAAGTATTTCTCATGTCACAAATCTTTAAGCATGAAATTGGATTTTAACATTTGCTTCATTGAGTCAATTTCAGAAACACAAGACCTTGTGCTAGAATGTCATCGACATATACTAGTAATGCAACAAAACGACTTTTAGATTCTTGAGTGAATTTGATTTTGATTTAGATTAGAGTAAATTTGTGTTTGAATAAGGCAGTCAAAACCTTCATGAACCATTGAGCATGGAATAGTTCGATCTCATATTTTAAGCATTTAACCCACAAAGTTATTGCTTTTAAATTTCAATCTGTTTTAAACTTTCTTTAGTGAATGAATTTAGATCCTATAGACATTAGCGGGCTTTTATTAAATTTGAGTGGTTTTTAGTCAGTGTTTCTTCCTCTTTTTTTCTTTACTTATTTAGCAATAGTTGTTTGATATTCTTCTTGCTTCTTTGGTGGGATTTTGGAAGAATAATTACTTTTATTTAGGTGGTTTTGAGTTGATTTTAAACAGATTGAAGTGAAAATAACAACAGATCACATAAAAATGGTCTATAGATTGCTTCATGTACAAAAAGTTGGAGTTTAAATTGATACAATTATTAGATTTAAGTTTCTATTGATCTTTCTATTGATACACGTTCAAAGTTTATGGTAATTCAATATTTGCCAAAATGTTTTAATAAATGTGTCTTTGGCACTTTGCATTGTCCTTGTCCTAGATTTGTAAAAAATGATGTCACCTTGTCTGCATCTATGATTCTTAGATGACTCAATAAAATATCTCGTGTGATTGTGATTTCTATGATCTATCACAAATTCTAAATGTTTAAGGCTTTAAGCTCAATGTATCAAAATTTAAAATGTGTGGGACACTAATGGAAAGTTACATGTTATTAGCATTTCCTTTGGGGAAATGTAAATTTTTACATTCCAACTTTTAATACCTATTGTTTATTAATTTTGATAATTTGGGGGCAAATTAGGAAGACAATTTTAAAATCTCTAACTTTCTATATAAACCTTTTTCAATCCATATGATCCCTCTTTTCTTTTTCTTTCTTTTTTTTTTTTTTTCATCACCTTTGTGCTCGGTGATATATTTGGCTACTTCACATTGCAGGAGCTGTCAAAAGTTGTTGCAAAGCAGGCAGAGGAAGGAAAGGTATGTATCATGTTTTTGCGTTAGTACAAAGGGGTTGAGGTTGGAAATAGATTGAGATATATATCTGGTGTAGATTGCTATGAGTTTCTACTTCAAGACTTTTGGGATCTATGCTTAATTAAACAGCCACTGATCATGAACTCTTGGTTCTGCATCTGCCTCTTTACAGGTGGCAGTAAGGAATATAAGAAGAGATGCTTTAAAAGCGTATGAAAAATTGGAAAAGGTTCGCAACACATACATCTTCATATCTCAATCTTACGATTCTTCTGCTTCTAACTCATATTGATCTTCCTTCCCAAGAGCAAGCTCCTTTATCTATTGTATAGTTTTTGCGCTTACTCTGGTTTCCTTAAATGTTTTGTTCTTGTTTCAGGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGTGATTTGCAGGTTTGTTGTTGCTTTTAAACTCAATTATTTAGAGCTTTTGGCCCTGCTTCAGTTATTTTCTATTAAAATTCGAGTAAGTTCACACTAGATATGATAGAAAGGAATGGCGGATGTAATTCCCTGGTGAAGGCATCAAACCTTGGAAAGGCTGTACTAAATTCAAAAGCACGAGTTGTGAAAACTGTAATCATTGCTTACAATGGATTTTAAGTTATCCAGCATATATATTAGGGGTTTTATTTCTCTCTTTCCCCTTATTTTGAGCATCCCAAGTTAAGATGATTTCTTTGTGCAGAAACTGACCGATGACTATATGAAGAAGATTGATGTCTTATACAAGCAAAAAGAGAAGGTATGGTCCATCTCGATTGAACTCTTTGAGTTTCAAAACTATTACTCAAACTATTGTCGAAGGACTCAAAGACTCTACACCGTTCCACTGATTTGACATGTTTCAGTGATTCTAAAATAGTTTAAGACAAGTTTGATCATTTTTAAAATCACTTGAAGAGTGCTTTTAATAAATGCAAAATCAATTTTAATAGAATAAAAAATACATTTGATAGTGTAAAATTAAACGAATAATTTTAAGTATGACAGCATTTTAAAATCACTTTCAAACATGCACTTAATCATGGATTCAAACACAAAATATTGATAGGATTCGAGTTAGAATCTACATTCCGCAGAGTTTTTGCAAGATCACTTACTAAACCTATTTGATTAGTCACAATAGTTTTCTGACACGTTTCTTGTATGTTAGTACCACTCTGACTACCCAACCAACATGTGTTTGTACTGTATTTCAGGAATTGTTGAAGGTATGACCAAAAAGCAAATGGTAGAGAGCTTTCCCTTTTGATTGCTGTGAAATATGAAATAATTGTTCGTTTTTCCCCTTGAATAGAGTTTTGATGTCAATTGTTAGAATCAATCAAACATCTTTCTTTTTTTTTTTCGGTTGAAATGAGAGTCAGCATCCTTGTGGGAAAAAGGTATTCAGCTAGCGATAGCATTATGCCTTCGGTTTTGTTGTTGTAAAATTGGCACATCTCGAACTTTTCACTTTGTACATTGGAACCGATGTTATCAGTTACCCATTTGGATTACCATCAACTGTTGAACTTACTAGTGTTAAAAAAAAAAATCGGTAATCCGATAAAGTCAAATTATCCAACCCACACCGTAAGGGTTGGGTTGGGTAGAAAATTAGGAAAAAAAAAATTGAGTATGGTGATTGGATTGTGCAAGTAAGGAGTTGGGTTGACTCGGTCCAACCGGATTATGTATATATATATATATATATAAATTTGATATGCTACCAAGCAATATTCTGTTAATAATAAACAAGTGATAGACATTGATATGTTTCTATTAGTAACATTGATATACTTCTATTCGTGAC

mRNA sequence

ATGGCCACCCCTTTCTCCGCCACCGCCTCTATCCGCCGTTCCCTCTTCCAGAATCCCCCTCCCAAATCCCTCCTCTCACTCCGAGATTATAATGGAGGGTTAAATTGCGTCAAATGCGGCTCCATTACTGCGCATCTTTGTTCATGGAAGTCAGCTTCCAACTACGTCAGGCTCAACCGACAAGCCCTAGTGATTTCTACCCAACTCTCTGTTTCTGGGAATGTGTTCAAAAACAGGTTAGTTGTGAGGGCTGCAACAATCGAAGAAATTGAAGCAGAGAAAACATTGATCGAGAAAGATGTAAAAGCAAGAATGGAAAAGACCATCGATACTGTTCGGTCTAATTTCAATTCAATTAGGACTGGGAGATCAAATCCTGCCATGCTTGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATCGCTCAAATTAGTACACCTGATGCAAGCTCACTCTTGGTCCAGCCATATGATAAATCCAGCTTAAAGTCAATAGAGAAGGCCATAGTCAACTCTGACTTGGGAATGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACGTCCGAAAGAAGAAAGGAGCTGTCAAAAGTTGTTGCAAAGCAGGCAGAGGAAGGAAAGGTGGCAGTAAGGAATATAAGAAGAGATGCTTTAAAAGCGTATGAAAAATTGGAAAAGGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGTGATTTGCAGAAACTGACCGATGACTATATGAAGAAGATTGATGTCTTATACAAGCAAAAAGAGAAGGAATTGTTGAAGGTATGA

Coding sequence (CDS)

ATGGCCACCCCTTTCTCCGCCACCGCCTCTATCCGCCGTTCCCTCTTCCAGAATCCCCCTCCCAAATCCCTCCTCTCACTCCGAGATTATAATGGAGGGTTAAATTGCGTCAAATGCGGCTCCATTACTGCGCATCTTTGTTCATGGAAGTCAGCTTCCAACTACGTCAGGCTCAACCGACAAGCCCTAGTGATTTCTACCCAACTCTCTGTTTCTGGGAATGTGTTCAAAAACAGGTTAGTTGTGAGGGCTGCAACAATCGAAGAAATTGAAGCAGAGAAAACATTGATCGAGAAAGATGTAAAAGCAAGAATGGAAAAGACCATCGATACTGTTCGGTCTAATTTCAATTCAATTAGGACTGGGAGATCAAATCCTGCCATGCTTGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATCGCTCAAATTAGTACACCTGATGCAAGCTCACTCTTGGTCCAGCCATATGATAAATCCAGCTTAAAGTCAATAGAGAAGGCCATAGTCAACTCTGACTTGGGAATGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACGTCCGAAAGAAGAAAGGAGCTGTCAAAAGTTGTTGCAAAGCAGGCAGAGGAAGGAAAGGTGGCAGTAAGGAATATAAGAAGAGATGCTTTAAAAGCGTATGAAAAATTGGAAAAGGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGTGATTTGCAGAAACTGACCGATGACTATATGAAGAAGATTGATGTCTTATACAAGCAAAAAGAGAAGGAATTGTTGAAGGTATGA

Protein sequence

MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNRQALVISTQLSVSGNVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV*

Homology

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BLAST of CsaV3_6G037240 vs. NCBI nr
Match: XP_011657524.1 (ribosome-recycling factor, chloroplastic isoform X2 [Cucumis sativus] >KGN48187.2 hypothetical protein Csa_004124 [Cucumis sativus])

HSP 1 Score: 516.9 bits (1330), Expect = 1.1e-142
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60
           MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR
Sbjct: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60

Query: 61  QALVISTQLSVSGNVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIR 120
           QALVISTQLSVSGNVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIR
Sbjct: 61  QALVISTQLSVSGNVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIR 120

Query: 121 TGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG 180
           TGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG
Sbjct: 121 TGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG 180

Query: 181 MTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKL 240
           MTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKL
Sbjct: 181 MTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKL 240

Query: 241 SEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           SEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 SEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]

BLAST of CsaV3_6G037240 vs. NCBI nr
Match: XP_004140097.1 (ribosome-recycling factor, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 512.3 bits (1318), Expect = 2.6e-141
Identity = 277/278 (99.64%), Postives = 277/278 (99.64%), Query Frame = 0


Query: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60
           MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR
Sbjct: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60

Query: 61  QALVISTQLSVSGNVFKN-RLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120
           QALVISTQLSVSGNVFKN RLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI
Sbjct: 61  QALVISTQLSVSGNVFKNRRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of CsaV3_6G037240 vs. NCBI nr
Match: XP_008449433.1 (PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 496.1 bits (1276), Expect = 1.9e-136
Identity = 265/277 (95.67%), Postives = 271/277 (97.83%), Query Frame = 0


Query: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60
           MATPFSAT SIRRSLF NPPPK LLSLRDYNGGLNCVKCGS +AHLCSWKSASNYVRLN+
Sbjct: 1   MATPFSATTSIRRSLFHNPPPKPLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLNQ 60

Query: 61  QALVISTQLSVSGNVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIR 120
           +AL++STQLSVSGNV KNR VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIR
Sbjct: 61  RALLLSTQLSVSGNVLKNRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIR 120

Query: 121 TGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG 180
           TGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG
Sbjct: 121 TGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG 180

Query: 181 MTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKL 240
           +TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKL
Sbjct: 181 LTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKL 240

Query: 241 SEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           SEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 SEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]

BLAST of CsaV3_6G037240 vs. NCBI nr
Match: XP_008449432.1 (PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 492.3 bits (1266), Expect = 2.8e-135
Identity = 265/278 (95.32%), Postives = 271/278 (97.48%), Query Frame = 0


Query: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60
           MATPFSAT SIRRSLF NPPPK LLSLRDYNGGLNCVKCGS +AHLCSWKSASNYVRLN+
Sbjct: 1   MATPFSATTSIRRSLFHNPPPKPLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLNQ 60

Query: 61  QALVISTQLSVSGNVFKNRL-VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120
           +AL++STQLSVSGNV KNR  VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI
Sbjct: 61  RALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           G+TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of CsaV3_6G037240 vs. NCBI nr
Match: XP_038888224.1 (ribosome-recycling factor, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 488.8 bits (1257), Expect = 3.1e-134
Identity = 262/280 (93.57%), Postives = 271/280 (96.79%), Query Frame = 0


Query: 1   MATPFSATASIRRSLF---QNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVR 60
           MATPFS+T S+RRS+F   QNPPPK+LLSLRDYN GLNCVKCGS T HLCSWKSASNYVR
Sbjct: 1   MATPFSSTTSVRRSVFQLTQNPPPKALLSLRDYNAGLNCVKCGSSTTHLCSWKSASNYVR 60

Query: 61  LNRQALVISTQLSVSGNVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFN 120
           L+RQALV+STQLSVSGN+ KNR VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFN
Sbjct: 61  LHRQALVLSTQLSVSGNLLKNRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFN 120

Query: 121 SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 180
           SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS
Sbjct: 121 SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 180

Query: 181 DLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKE 240
           DLG+TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKE
Sbjct: 181 DLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKE 240

Query: 241 KKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           KKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 KKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 280

[Close]

BLAST of CsaV3_6G037240 vs. ExPASy Swiss-Prot
Match: Q9M1X0 (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RRF PE=2 SV=2)

HSP 1 Score: 320.1 bits (819), Expect = 2.5e-86
Identity = 190/283 (67.14%), Postives = 220/283 (77.74%), Query Frame = 0


Query: 1   MATPFSATASIRRSL-FQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLN 60
           MA  FS+TA     L F+    K LLSL D         C  I +   S  +        
Sbjct: 1   MAASFSSTAPTTPVLRFRANYSKPLLSLPD--------SCLRIISSAISPSTRLIACSFK 60

Query: 61  RQALVISTQLSVSG-----NVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRS 120
              L +   +++SG        + RLV+R+ATIEEIEAEK+ IE DVK++MEKTI+T+R+
Sbjct: 61  TDKLPLGAGVNLSGGPVVKRSLQKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRT 120

Query: 121 NFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAI 180
           +FNSIRTGRSN AMLDKIEVEYYGSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAI
Sbjct: 121 SFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAI 180

Query: 181 VNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKL 240
           VNSDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL
Sbjct: 181 VNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKL 240

Query: 241 EKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           EKEKKLSEDNVKDLSSDLQKL D YMKKI+ LYKQKEKEL+KV
Sbjct: 241 EKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

[Close]

BLAST of CsaV3_6G037240 vs. ExPASy Swiss-Prot
Match: P82231 (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea OX=3562 GN=RRF PE=1 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.3e-84
Identity = 166/245 (67.76%), Postives = 206/245 (84.08%), Query Frame = 0


Query: 33  GLNCVKCGSITAHLCSWKSASNYVRLNRQALVISTQLSVSGNVFKNRLVVRAATIEEIEA 92
           G++ ++C     ++  W+S++NYVR++      S +  V   +       R AT+EE+EA
Sbjct: 27  GVSDMECNIARTNVSVWRSSANYVRMDCGVKKFSGKAVVVKQLQNRAGTFRCATMEEVEA 86

Query: 93  EKTLIEKDVKARMEKTIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTP 152
           EK+LIE + K RMEKTI+T+RSNFNS+RT R++P MLD+IEVEYYG+PVSLKSIAQISTP
Sbjct: 87  EKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTP 146

Query: 153 DASSLLVQPYDKSSLKSIEKAIVNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 212
           DASSLL+ PYDKSSLK+IEKAIV S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K 
Sbjct: 147 DASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKL 206

Query: 213 AEEGKVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEK 272
           AEEGKVAVRNIRRDALK+YEKLEKEKKLSEDNVKDLS+DLQKLTD+YMKK++ +YKQKE+
Sbjct: 207 AEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQKEQ 266

Query: 273 ELLKV 278
           EL+KV
Sbjct: 267 ELMKV 271

[Close]

BLAST of CsaV3_6G037240 vs. ExPASy Swiss-Prot
Match: P37706 (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota OX=4039 GN=RRF PE=2 SV=2)

HSP 1 Score: 303.9 bits (777), Expect = 1.9e-81
Identity = 164/236 (69.49%), Postives = 200/236 (84.75%), Query Frame = 0


Query: 49  WKSASNYVRLN-------RQALVISTQLSVSGNVFKNRLVVRAATIEEIEAEKTLIEKDV 108
           W +A+NYV++        R+ +V+S          K    ++ AT+EEIEAEK+LIEK V
Sbjct: 1   WTAAANYVKIKVGTGKFARKTVVLSQ---------KRTGTLKCATMEEIEAEKSLIEKSV 60

Query: 109 KARMEKTIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQP 168
           K RMEKTI+ V+++FNSIRT RSNP MLDKI+VEYYG+P SLKSIAQISTPD+SSLLV P
Sbjct: 61  KERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNP 120

Query: 169 YDKSSLKSIEKAIVNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 228
           YDKSSLK IEKAIVNSDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKVA+R
Sbjct: 121 YDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALR 180

Query: 229 NIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           NIRRDA+K+Y+KLEKEKKLSEDNVKDLSSDLQK+ D+Y+KK+D ++KQKEKEL+ V
Sbjct: 181 NIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 227

[Close]

BLAST of CsaV3_6G037240 vs. ExPASy Swiss-Prot
Match: A2YMU2 (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 289.7 bits (740), Expect = 3.6e-77
Identity = 154/227 (67.84%), Postives = 197/227 (86.78%), Query Frame = 0


Query: 51  SASNYVRLNRQALVISTQLSVSGNVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTID 110
           S++N++ L    +   ++  +  N  K R V+R ATIEEIEAEK++IE   + RMEK I+
Sbjct: 41  SSTNFMSLRAGPMRFYSRPLILQNSDK-RAVLRHATIEEIEAEKSVIEDQARERMEKAIE 100

Query: 111 TVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSI 170
           TV++NFN++RTGR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK I
Sbjct: 101 TVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLI 160

Query: 171 EKAIVNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKA 230
           EK IV ++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA+KA
Sbjct: 161 EKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKA 220

Query: 231 YEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           Y+KLEKEKKLSEDNVKDLS+DLQK+TD+YMKKI+ + KQKE+EL+K+
Sbjct: 221 YDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266

[Close]

BLAST of CsaV3_6G037240 vs. ExPASy Swiss-Prot
Match: A3BLC3 (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 289.7 bits (740), Expect = 3.6e-77
Identity = 154/227 (67.84%), Postives = 197/227 (86.78%), Query Frame = 0


Query: 51  SASNYVRLNRQALVISTQLSVSGNVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTID 110
           S++N++ L    +   ++  +  N  K R V+R ATIEEIEAEK++IE   + RMEK I+
Sbjct: 41  SSTNFMSLRAGPMRFYSRPLILQNSDK-RAVLRHATIEEIEAEKSVIEDQARERMEKAIE 100

Query: 111 TVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSI 170
           TV++NFN++RTGR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK I
Sbjct: 101 TVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLI 160

Query: 171 EKAIVNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKA 230
           EK IV ++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA+KA
Sbjct: 161 EKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKA 220

Query: 231 YEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           Y+KLEKEKKLSEDNVKDLS+DLQK+TD+YMKKI+ + KQKE+EL+K+
Sbjct: 221 YDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266

[Close]

BLAST of CsaV3_6G037240 vs. ExPASy TrEMBL
Match: A0A0A0KJG4 (Ribosome-recycling factor, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G410660 PE=3 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.3e-141
Identity = 277/278 (99.64%), Postives = 277/278 (99.64%), Query Frame = 0


Query: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60
           MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR
Sbjct: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60

Query: 61  QALVISTQLSVSGNVFKN-RLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120
           QALVISTQLSVSGNVFKN RLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI
Sbjct: 61  QALVISTQLSVSGNVFKNRRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of CsaV3_6G037240 vs. ExPASy TrEMBL
Match: A0A1S3BMY6 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322 PE=3 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 9.4e-137
Identity = 265/277 (95.67%), Postives = 271/277 (97.83%), Query Frame = 0


Query: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60
           MATPFSAT SIRRSLF NPPPK LLSLRDYNGGLNCVKCGS +AHLCSWKSASNYVRLN+
Sbjct: 1   MATPFSATTSIRRSLFHNPPPKPLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLNQ 60

Query: 61  QALVISTQLSVSGNVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIR 120
           +AL++STQLSVSGNV KNR VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIR
Sbjct: 61  RALLLSTQLSVSGNVLKNRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIR 120

Query: 121 TGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG 180
           TGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG
Sbjct: 121 TGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG 180

Query: 181 MTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKL 240
           +TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKL
Sbjct: 181 LTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKL 240

Query: 241 SEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           SEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 SEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]

BLAST of CsaV3_6G037240 vs. ExPASy TrEMBL
Match: A0A1S3BMN4 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.4e-135
Identity = 265/278 (95.32%), Postives = 271/278 (97.48%), Query Frame = 0


Query: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60
           MATPFSAT SIRRSLF NPPPK LLSLRDYNGGLNCVKCGS +AHLCSWKSASNYVRLN+
Sbjct: 1   MATPFSATTSIRRSLFHNPPPKPLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLNQ 60

Query: 61  QALVISTQLSVSGNVFKNRL-VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120
           +AL++STQLSVSGNV KNR  VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI
Sbjct: 61  RALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           G+TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of CsaV3_6G037240 vs. ExPASy TrEMBL
Match: A0A6J1ESI6 (Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437377 PE=3 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 3.0e-119
Identity = 239/281 (85.05%), Postives = 258/281 (91.81%), Query Frame = 0


Query: 1   MATPFSATASIRRSLF---QNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVR 60
           MATPFS+T S+ RS+F   Q PPPK+LLS+RDYN GLNC+KCGS T  L SWKSASNY+R
Sbjct: 1   MATPFSSTTSL-RSVFRPKQIPPPKALLSIRDYNAGLNCIKCGSTTTPLSSWKSASNYIR 60

Query: 61  LNRQALVISTQLSVSGNVFK-NRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF 120
           + R AL++ TQ   SGN+ K  R V+RAATIEEIEAEK LIEKDV+ARMEKTIDTVRS+F
Sbjct: 61  IRRHALMLPTQPFQSGNLSKYRRGVIRAATIEEIEAEKALIEKDVRARMEKTIDTVRSSF 120

Query: 121 NSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVN 180
           NSIRTGR+NPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSLKSIEKAIVN
Sbjct: 121 NSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLKSIEKAIVN 180

Query: 181 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEK 240
           S+LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAY+KLEK
Sbjct: 181 SNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYDKLEK 240

Query: 241 EKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           EKKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 EKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 280

[Close]

BLAST of CsaV3_6G037240 vs. ExPASy TrEMBL
Match: A0A6J1DZ32 (Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111025588 PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.5e-118
Identity = 242/280 (86.43%), Postives = 261/280 (93.21%), Query Frame = 0


Query: 1   MATPFSATASIRRSLFQ--NPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRL 60
           MATPFS T S+ RS+FQ  +   ++LLSLRDYNGGLNCVKCG  TAH+ SW SA+NYVRL
Sbjct: 1   MATPFS-TISV-RSVFQPKHNRARALLSLRDYNGGLNCVKCGLNTAHVYSWNSAANYVRL 60

Query: 61  NRQALVISTQLSVSGNVFKNRL-VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFN 120
            R AL+IS+ + VSG++ KNR  VV+AATIEEIEAEKTLIEKDV++RMEKTIDTVRSNFN
Sbjct: 61  KRHALMISSHVIVSGSLLKNRRGVVKAATIEEIEAEKTLIEKDVRSRMEKTIDTVRSNFN 120

Query: 121 SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 180
           SIRTGR+NP+MLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS
Sbjct: 121 SIRTGRANPSMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 180

Query: 181 DLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKE 240
           DLG+TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKE
Sbjct: 181 DLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKE 240

Query: 241 KKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           KKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 KKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 278

[Close]

BLAST of CsaV3_6G037240 vs. TAIR 10
Match: AT3G63190.1 (ribosome recycling factor, chloroplast precursor )

HSP 1 Score: 320.1 bits (819), Expect = 1.8e-87
Identity = 190/283 (67.14%), Postives = 220/283 (77.74%), Query Frame = 0


Query: 1   MATPFSATASIRRSL-FQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLN 60
           MA  FS+TA     L F+    K LLSL D         C  I +   S  +        
Sbjct: 1   MAASFSSTAPTTPVLRFRANYSKPLLSLPD--------SCLRIISSAISPSTRLIACSFK 60

Query: 61  RQALVISTQLSVSG-----NVFKNRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRS 120
              L +   +++SG        + RLV+R+ATIEEIEAEK+ IE DVK++MEKTI+T+R+
Sbjct: 61  TDKLPLGAGVNLSGGPVVKRSLQKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRT 120

Query: 121 NFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAI 180
           +FNSIRTGRSN AMLDKIEVEYYGSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAI
Sbjct: 121 SFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAI 180

Query: 181 VNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKL 240
           VNSDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL
Sbjct: 181 VNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKL 240

Query: 241 EKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
           EKEKKLSEDNVKDLSSDLQKL D YMKKI+ LYKQKEKEL+KV
Sbjct: 241 EKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

[Close]

BLAST of CsaV3_6G037240 vs. TAIR 10
Match: AT3G01800.1 (Ribosome recycling factor )

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-22
Identity = 64/178 (35.96%), Postives = 101/178 (56.74%), Query Frame = 0


Query: 97  IEKDVKARMEKTIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASS 156
           ++    ++ME  ID +  +   +RTGR+ P MLD I VE  G  + L  +A +S  D  +
Sbjct: 89  VKAAASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKT 148

Query: 157 LLVQPYDKSSLKSIEKAIVNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 216
           L V PYD  ++K +EKAIV S LG+ P  DG+ +  ++P LT E  + + K+V K +E  
Sbjct: 149 LSVNPYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVV 208

Query: 217 KVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKEL 275
           K ++R  R+ AL   +K      L +D VK L  ++ +LT  ++K  + + K KEKE+
Sbjct: 209 KQSIRRARQKALDTIKK--AGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEI 264

The following BLAST results are available for this feature:

BLAST of CsaV3_6G037240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657524.1	1.1e-142	100.00	ribosome-recycling factor, chloroplastic isoform X2 [Cucumis sativus] >KGN48187....	[more]
XP_004140097.1	2.6e-141	99.64	ribosome-recycling factor, chloroplastic isoform X1 [Cucumis sativus]	[more]
XP_008449433.1	1.9e-136	95.67	PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_008449432.1	2.8e-135	95.32	PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_038888224.1	3.1e-134	93.57	ribosome-recycling factor, chloroplastic isoform X2 [Benincasa hispida]	[more]

BLAST of CsaV3_6G037240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1X0	2.5e-86	67.14	Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RRF ...	[more]
P82231	2.3e-84	67.76	Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea OX=3562 GN=RRF PE=...	[more]
P37706	1.9e-81	69.49	Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota OX=4039 GN=...	[more]
A2YMU2	3.6e-77	67.84	Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica OX=39946 ...	[more]
A3BLC3	3.6e-77	67.84	Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of CsaV3_6G037240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJG4	1.3e-141	99.64	Ribosome-recycling factor, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G410...	[more]
A0A1S3BMY6	9.4e-137	95.67	Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322...	[more]
A0A1S3BMN4	1.4e-135	95.32	Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322...	[more]
A0A6J1ESI6	3.0e-119	85.05	Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DZ32	1.5e-118	86.43	Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of CsaV3_6G037240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63190.1	1.8e-87	67.14	ribosome recycling factor, chloroplast precursor	[more]
AT3G01800.1	1.5e-22	35.96	Ribosome recycling factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 224..258
None	No IPR available	GENE3D	3.30.1360.40		coord: 123..197 e-value: 2.0E-69 score: 234.5
None	No IPR available	PANTHER	PTHR20982:SF3	MITOCHONDRIAL RIBOSOME RECYCLING FACTOR	coord: 32..276
IPR002661	Ribosome recycling factor	TIGRFAM	TIGR00496	TIGR00496	coord: 102..277 e-value: 1.1E-66 score: 221.7
IPR002661	Ribosome recycling factor	PANTHER	PTHR20982	RIBOSOME RECYCLING FACTOR	coord: 32..276
IPR002661	Ribosome recycling factor	HAMAP	MF_00040	RRF	coord: 95..277 score: 26.32621
IPR002661	Ribosome recycling factor	CDD	cd00520	RRF	coord: 97..275 e-value: 7.60182E-80 score: 237.158
IPR036191	RRF superfamily	GENE3D	1.10.132.20		coord: 104..274 e-value: 2.0E-69 score: 234.5
IPR036191	RRF superfamily	SUPERFAMILY	55194	Ribosome recycling factor, RRF	coord: 97..276
IPR023584	Ribosome recycling factor domain	PFAM	PF01765	RRF	coord: 114..275 e-value: 2.3E-61 score: 206.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G037240.1	CsaV3_6G037240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation