CsaV3_6G021450 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G021450
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 14494665 .. 14495053 (+)
RNA-Seq ExpressionCsaV3_6G021450
SyntenyCsaV3_6G021450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGTGGGGCAAATTACACTTAATATAAAAAGCATGTCTATCTTTCTCAACCAGTGGATTCCAAAAAAACAAGCAAGAGAGCCAAATCTCAATCAAAATGTTGGAGGCTTTGAAATCTTGGTAAATAAACTAAGGTTAAACTTACTTAGGGTGGGCAGTGGCGAAAGGAGCACTTACGACGAGTTCAGTGAGCAAGGGAGCGGCGACCTCGTGTGACGTTCAGATGGTAGCAGGTAGCGGTAGCGTTCAACAGCGTTCAAATGGTAGCATGTAGCAGCGACGTTCGAATGGTGGGTTGCAAGAATAGGAAGAGGGAAATGGGGAGGGTAGCGACGACGTTTAGATGGTGGGTTGTGAGAAGAGGAAGAGGAAAATCGGAAGGGTAG

mRNA sequence

ATGGTAGTGGGGCAAATTACACTTAATATAAAAAGCATGTCTATCTTTCTCAACCAGTGGATTCCAAAAAAACAAGCAAGAGAGCCAAATCTCAATCAAAATGTTGGAGGCTTTGAAATCTTGGTAGCGGTAGCGTTCAACAGCGTTCAAATGGTAGCATGTAGCAGCGACGTTCGAATGGTGGGTTGCAAGAATAGGAAGAGGGAAATGGGGAGGGTAGCGACGACGTTTAGATGGTGGGTTGTGAGAAGAGGAAGAGGAAAATCGGAAGGGTAG

Coding sequence (CDS)

ATGGTAGTGGGGCAAATTACACTTAATATAAAAAGCATGTCTATCTTTCTCAACCAGTGGATTCCAAAAAAACAAGCAAGAGAGCCAAATCTCAATCAAAATGTTGGAGGCTTTGAAATCTTGGTAGCGGTAGCGTTCAACAGCGTTCAAATGGTAGCATGTAGCAGCGACGTTCGAATGGTGGGTTGCAAGAATAGGAAGAGGGAAATGGGGAGGGTAGCGACGACGTTTAGATGGTGGGTTGTGAGAAGAGGAAGAGGAAAATCGGAAGGGTAG

Protein sequence

MVVGQITLNIKSMSIFLNQWIPKKQAREPNLNQNVGGFEILVAVAFNSVQMVACSSDVRMVGCKNRKREMGRVATTFRWWVVRRGRGKSEG*
Homology
[Close]
BLAST of CsaV3_6G021450 vs. NCBI nr
Match: KAE8647048.1 (hypothetical protein Csa_023025 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MVVGQITLNIKSMSIFLNQWIPKKQAREPNLNQNVGGFEILVAVAFNSVQMVACSSDVRM 60
          MVVGQITLNIKSMSIFLNQWIPKKQAREPNLNQNVGGFEILVAVAFNSVQMVACSSDVRM
Sbjct: 1  MVVGQITLNIKSMSIFLNQWIPKKQAREPNLNQNVGGFEILVAVAFNSVQMVACSSDVRM 60

Query: 61 VGCKNRKREMGRVATTFRWWVVRRGRGKSEG 92
          VGCKNRKREMGRVATTFRWWVVRRGRGKSEG
Sbjct: 61 VGCKNRKREMGRVATTFRWWVVRRGRGKSEG 91

[Close]
BLAST of CsaV3_6G021450 vs. NCBI nr
Match: KGN44618.1 (hypothetical protein Csa_016161 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 6.9e-06
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 39 EILVAVAFNSVQMVACSSDVRMVGCKNRKREMGRVATTFRWWVVRRGRGKSEG 92
          ++ +       +MVA SS VR+VGCK RK +M ++ATTF WWV RRGRGK  G
Sbjct: 13 DVRMVAGSGGARMVASSSGVRIVGCKKRKMKMRKIATTFIWWVGRRGRGKLGG 65

[Close]
BLAST of CsaV3_6G021450 vs. ExPASy TrEMBL
Match: A0A0A0KHM6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G285220 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.6e-43
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 1  MVVGQITLNIKSMSIFLNQWIPKKQAREPNLNQNVGGFEILVAVAFNSVQMVACSSDVRM 60
          MVVGQI LNIKSMSIFLNQWIPKKQAREPNLNQNVGGFEILVAVAFNSVQMVACSSDVRM
Sbjct: 1  MVVGQIALNIKSMSIFLNQWIPKKQAREPNLNQNVGGFEILVAVAFNSVQMVACSSDVRM 60

Query: 61 VGCKNRKREMGRVATTFRWWVVRRGRGKSEG 92
          VGCKNRKREMGRVATTFRWWVVRRGRGKSEG
Sbjct: 61 VGCKNRKREMGRVATTFRWWVVRRGRGKSEG 91

[Close]
BLAST of CsaV3_6G021450 vs. ExPASy TrEMBL
Match: A0A0A0K575 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G343350 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-06
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 39 EILVAVAFNSVQMVACSSDVRMVGCKNRKREMGRVATTFRWWVVRRGRGKSEG 92
          ++ +       +MVA SS VR+VGCK RK +M ++ATTF WWV RRGRGK  G
Sbjct: 13 DVRMVAGSGGARMVASSSGVRIVGCKKRKMKMRKIATTFIWWVGRRGRGKLGG 65

The following BLAST results are available for this feature:
BLAST of CsaV3_6G021450 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647048.11.4e-43100.00hypothetical protein Csa_023025 [Cucumis sativus][more]
KGN44618.16.9e-0652.83hypothetical protein Csa_016161 [Cucumis sativus][more]
BLAST of CsaV3_6G021450 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G021450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHM62.6e-4398.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G285220 PE=4 SV=1[more]
A0A0A0K5753.3e-0652.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G343350 PE=4 SV=1[more]
BLAST of CsaV3_6G021450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G021450.1CsaV3_6G021450.1mRNA