CsaV3_6G015930 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATTTGATTGAAATCATCATCACATGCCCTCGTTTCCCTATATATAAACTCACTAATGGGGTTCTCTCTTTTTCCATCTTTTGGATTCCCTCTTCAACAACTCTCCAAATCCAAACCCATTACTCTTAATCATTTCCCTTGCCTTCTCTTCTTCTTTTAGTATTCAAGAACACAATATTATTGTGTATTAAGGATGGGAGTCGGTTCATCACCCTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGCATTTTTGCTCCTTATTTCCCTCCTCATGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCCAGCAATGTTAGCAAAATGTTGCAGGTGATCTCTTCTTCTTCAATCTTCTTAATTATCACTTTTTATTTTTTACTTCAATTTGGTAGTCTCCATTACATATTCGAACATCCAACGTCTTAGCCATTCTAGATGTACAATGACTCGTTGGTGTTTACGATATGGATTTTGTTTCAAGCTTTTAGGTCAACCAAATTTAAGATGGTAATAGAATAGTTACAATGATCGATCATTGTGTTCAAACGCAATTCGTTATTTAAGAGCTTAACAATTGAACTTGCATTGAATGGTAGTAGAGCTATAACAATTATTGTATTAAATAATTTTTTTTCCAAAATATTTTTGGTTTATTTGAAAAAAATTTTGAATGTGATTTTTGTATTTATTAGGAGGTTCCAGTAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCGAGAATGCAAGATCCAGTGTATGGTTGTGTAGGAAAAATCTTGTTTTTGCAAAACGAAGTGTCTCAATTAGAAATTCAACTAGGGGCAGCTCGAGCGGAGATTTTGATGTTACAAATGCGACAACAACAAGAAGCCTCGATAACATTTCCGATGACGACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTCTCTCAAATGCCGATTCTTCTAATTCCTTCCATGTTTTTCAAGCAGCAGATGATCATTACCCTTTATGGACTTGAATAACTTTCATCACTATTATTAATTATTATTATCAA ATGGGAGTCGGTTCATCACCCTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGCATTTTTGCTCCTTATTTCCCTCCTCATGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCCAGCAATGTTAGCAAAATGTTGCAGGAGGTTCCAGTAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCGAGAATGCAAGATCCAGTGTATGGTTGTGTAGGAAAAATCTTGTTTTTGCAAAACGAAGTGTCTCAATTAGAAATTCAACTAGGGGCAGCTCGAGCGGAGATTTTGATGTTACAAATGCGACAACAACAAGAAGCCTCGATAACATTTCCGATGACGACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTCTCTCAAATGCCGATTCTTCTAATTCCTTCCATGTTTTTCAAGCAGCAGATGATCATTACCCTTTATGGACTTGA ATGGGAGTCGGTTCATCACCCTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGCATTTTTGCTCCTTATTTCCCTCCTCATGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCCAGCAATGTTAGCAAAATGTTGCAGGAGGTTCCAGTAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCGAGAATGCAAGATCCAGTGTATGGTTGTGTAGGAAAAATCTTGTTTTTGCAAAACGAAGTGTCTCAATTAGAAATTCAACTAGGGGCAGCTCGAGCGGAGATTTTGATGTTACAAATGCGACAACAACAAGAAGCCTCGATAACATTTCCGATGACGACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTCTCTCAAATGCCGATTCTTCTAATTCCTTCCATGTTTTTCAAGCAGCAGATGATCATTACCCTTTATGGACTTGA MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASITFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT* Homology
BLAST of CsaV3_6G015930 vs. NCBI nr
Match: XP_004143222.1 (LOB domain-containing protein 12 [Cucumis sativus] >KGN47050.1 hypothetical protein Csa_021050 [Cucumis sativus]) HSP 1 Score: 325.5 bits (833), Expect = 2.7e-85 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. NCBI nr
Match: XP_008463841.1 (PREDICTED: LOB domain-containing protein 12-like [Cucumis melo]) HSP 1 Score: 285.0 bits (728), Expect = 4.0e-73 Identity = 142/162 (87.65%), Postives = 149/162 (91.98%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. NCBI nr
Match: XP_038902597.1 (LOB domain-containing protein 12 [Benincasa hispida]) HSP 1 Score: 261.5 bits (667), Expect = 4.7e-66 Identity = 133/162 (82.10%), Postives = 145/162 (89.51%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. NCBI nr
Match: XP_023006803.1 (LOB domain-containing protein 12-like [Cucurbita maxima]) HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57 Identity = 121/162 (74.69%), Postives = 136/162 (83.95%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. NCBI nr
Match: KAG6605396.1 (LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035343.1 LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 231.9 bits (590), Expect = 4.0e-57 Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2) HSP 1 Score: 191.4 bits (485), Expect = 7.9e-48 Identity = 97/154 (62.99%), Postives = 125/154 (81.17%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 7.4e-38 Identity = 75/119 (63.03%), Postives = 97/119 (81.51%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2) HSP 1 Score: 154.8 bits (390), Expect = 8.2e-37 Identity = 75/151 (49.67%), Postives = 101/151 (66.89%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 1.4e-36 Identity = 80/162 (49.38%), Postives = 106/162 (65.43%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2) HSP 1 Score: 149.1 bits (375), Expect = 4.5e-35 Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL
Match: A0A0A0KBK5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=3 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL
Match: A0A1S3CKM4 (LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE=3 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73 Identity = 142/162 (87.65%), Postives = 149/162 (91.98%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL
Match: A0A6J1L5Y7 (LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111499469 PE=3 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 8.7e-58 Identity = 121/162 (74.69%), Postives = 136/162 (83.95%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL
Match: A0A6J1G7F7 (LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111451558 PE=3 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 5.6e-57 Identity = 120/162 (74.07%), Postives = 135/162 (83.33%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL
Match: A0A6S7PXZ7 (LOB domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS39595 PE=3 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 2.8e-48 Identity = 111/177 (62.71%), Postives = 130/177 (73.45%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein ) HSP 1 Score: 191.4 bits (485), Expect = 5.6e-49 Identity = 97/154 (62.99%), Postives = 125/154 (81.17%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 ) HSP 1 Score: 158.3 bits (399), Expect = 5.2e-39 Identity = 75/119 (63.03%), Postives = 97/119 (81.51%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 ) HSP 1 Score: 154.8 bits (390), Expect = 5.8e-38 Identity = 75/151 (49.67%), Postives = 101/151 (66.89%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 ) HSP 1 Score: 154.1 bits (388), Expect = 9.9e-38 Identity = 80/162 (49.38%), Postives = 106/162 (65.43%), Query Frame = 0
BLAST of CsaV3_6G015930 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 ) HSP 1 Score: 149.1 bits (375), Expect = 3.2e-36 Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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