CsaV3_6G015930 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G015930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	LOB domain-containing protein
Location	chr6: 11927402 .. 11928480 (+)
RNA-Seq Expression	CsaV3_6G015930
Synteny	CsaV3_6G015930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGATTGAAATCATCATCACATGCCCTCGTTTCCCTATATATAAACTCACTAATGGGGTTCTCTCTTTTTCCATCTTTTGGATTCCCTCTTCAACAACTCTCCAAATCCAAACCCATTACTCTTAATCATTTCCCTTGCCTTCTCTTCTTCTTTTAGTATTCAAGAACACAATATTATTGTGTATTAAGGATGGGAGTCGGTTCATCACCCTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGCATTTTTGCTCCTTATTTCCCTCCTCATGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCCAGCAATGTTAGCAAAATGTTGCAGGTGATCTCTTCTTCTTCAATCTTCTTAATTATCACTTTTTATTTTTTACTTCAATTTGGTAGTCTCCATTACATATTCGAACATCCAACGTCTTAGCCATTCTAGATGTACAATGACTCGTTGGTGTTTACGATATGGATTTTGTTTCAAGCTTTTAGGTCAACCAAATTTAAGATGGTAATAGAATAGTTACAATGATCGATCATTGTGTTCAAACGCAATTCGTTATTTAAGAGCTTAACAATTGAACTTGCATTGAATGGTAGTAGAGCTATAACAATTATTGTATTAAATAATTTTTTTTCCAAAATATTTTTGGTTTATTTGAAAAAAATTTTGAATGTGATTTTTGTATTTATTAGGAGGTTCCAGTAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCGAGAATGCAAGATCCAGTGTATGGTTGTGTAGGAAAAATCTTGTTTTTGCAAAACGAAGTGTCTCAATTAGAAATTCAACTAGGGGCAGCTCGAGCGGAGATTTTGATGTTACAAATGCGACAACAACAAGAAGCCTCGATAACATTTCCGATGACGACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTCTCTCAAATGCCGATTCTTCTAATTCCTTCCATGTTTTTCAAGCAGCAGATGATCATTACCCTTTATGGACTTGAATAACTTTCATCACTATTATTAATTATTATTATCAA

mRNA sequence

ATGGGAGTCGGTTCATCACCCTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGCATTTTTGCTCCTTATTTCCCTCCTCATGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCCAGCAATGTTAGCAAAATGTTGCAGGAGGTTCCAGTAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCGAGAATGCAAGATCCAGTGTATGGTTGTGTAGGAAAAATCTTGTTTTTGCAAAACGAAGTGTCTCAATTAGAAATTCAACTAGGGGCAGCTCGAGCGGAGATTTTGATGTTACAAATGCGACAACAACAAGAAGCCTCGATAACATTTCCGATGACGACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTCTCTCAAATGCCGATTCTTCTAATTCCTTCCATGTTTTTCAAGCAGCAGATGATCATTACCCTTTATGGACTTGA

Coding sequence (CDS)

ATGGGAGTCGGTTCATCACCCTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGCATTTTTGCTCCTTATTTCCCTCCTCATGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCCAGCAATGTTAGCAAAATGTTGCAGGAGGTTCCAGTAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCGAGAATGCAAGATCCAGTGTATGGTTGTGTAGGAAAAATCTTGTTTTTGCAAAACGAAGTGTCTCAATTAGAAATTCAACTAGGGGCAGCTCGAGCGGAGATTTTGATGTTACAAATGCGACAACAACAAGAAGCCTCGATAACATTTCCGATGACGACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTCTCTCAAATGCCGATTCTTCTAATTCCTTCCATGTTTTTCAAGCAGCAGATGATCATTACCCTTTATGGACTTGA

Protein sequence

MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASITFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT*

Homology

[Close]

BLAST of CsaV3_6G015930 vs. NCBI nr
Match: XP_004143222.1 (LOB domain-containing protein 12 [Cucumis sativus] >KGN47050.1 hypothetical protein Csa_021050 [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 2.7e-85
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60
           MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120
           ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120

Query: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 163
           TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT
Sbjct: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 162

[Close]

BLAST of CsaV3_6G015930 vs. NCBI nr
Match: XP_008463841.1 (PREDICTED: LOB domain-containing protein 12-like [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 4.0e-73
Identity = 142/162 (87.65%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60
           MGVGSSPCASCKLLRRRCAKDCIFAPYFPP DPLKFAIVHKIFGASNVSKMLQEVP+DQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120
           ADAVSSMVYEASARMQDPVYGCVG I FLQNEVS+LEIQLGAA+AEIL LQMR QQE S 
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMR-QQETST 120

Query: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 163
           TFP TTTQMDQDEQNLMI SN DSSNS H+FQA +D+Y +WT
Sbjct: 121 TFPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161

[Close]

BLAST of CsaV3_6G015930 vs. NCBI nr
Match: XP_038902597.1 (LOB domain-containing protein 12 [Benincasa hispida])

HSP 1 Score: 261.5 bits (667), Expect = 4.7e-66
Identity = 133/162 (82.10%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60
           M +GSSPCASCKLLRRRCAKDCIFAPYFPP DPLKFAIVHKIFGASNVSKMLQEV V+QR
Sbjct: 1   MRIGSSPCASCKLLRRRCAKDCIFAPYFPPDDPLKFAIVHKIFGASNVSKMLQEVSVEQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120
            DAV+SMVYEASARM+DPVYGCVG I FLQNEVS+LEIQLGAA+AEIL LQM QQQ+A +
Sbjct: 61  TDAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEIQLGAAQAEILTLQM-QQQQAPM 120

Query: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 163
           T   TTTQMDQD+QNL+I SN DSSNSFH FQ  +D+YPLWT
Sbjct: 121 T---TTTQMDQDDQNLVIFSNVDSSNSFHTFQEMEDYYPLWT 158

[Close]

BLAST of CsaV3_6G015930 vs. NCBI nr
Match: XP_023006803.1 (LOB domain-containing protein 12-like [Cucurbita maxima])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 121/162 (74.69%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VS+LE+QL AA+AEIL  QM QQQ AS 
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQM-QQQAASA 120

Query: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 163
           +FPM  TQM+Q +QNL+ LSNADS NS       +D+  LW+
Sbjct: 121 SFPM--TQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CsaV3_6G015930 vs. NCBI nr
Match: KAG6605396.1 (LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035343.1 LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.9 bits (590), Expect = 4.0e-57
Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VS+LE+QL AA+AEIL  QM QQQ A  
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQM-QQQAAPA 120

Query: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 163
           +FPM  TQM+Q +QNL+ LSNADS NS       +D+  LW+
Sbjct: 121 SFPM--TQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 191.4 bits (485), Expect = 7.9e-48
Identity = 97/154 (62.99%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 2   GVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRA 61
           G GSSPCASCKLLRRRCAKDCIFAPYFPP DP KFAIVHK+FGASNVSKMLQE+PV QRA
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASIT 121
           DAV+S+V+EA+AR++DPVYGCVG I +LQN+VSQL++QL  A+AEIL +QM  Q E ++ 
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM--QNEPTLQ 122

Query: 122 FPMTTTQMDQDEQNLMI----LSNADSSNSFHVF 152
                 ++DQD + L++    ++N +++N+ + F
Sbjct: 123 SHHQVLELDQDHKALLLNNNNINNCNTNNNNNNF 154

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BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.4e-38
Identity = 75/119 (63.03%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP  +P KFA VH++FGASNV+KMLQE+P+ QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  SSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASITFP 124
           SSMVYEA+AR++DPVYGCVG I  LQ ++  L+ QL  A+AE++ L++RQ    S  FP
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ----STNFP 125

[Close]

BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-37
Identity = 75/151 (49.67%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVS 65
           SPCA+CK+LRRRCA  C+ APYFPP DP KF I H++FGASN+ K LQE+P  QR DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASITFPMT 125
           SMVYEA ARM+DPVYGC G I  LQ +VS+L+ QL   + E++ +Q+++     + + M 
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNME 173

Query: 126 TTQMDQDEQNLMILSNADSSNSFHVFQAADD 157
            T++   EQ    +S   S  S   F ++ D
Sbjct: 174 QTKLSVQEQGQQKMSFESSFESGDEFISSPD 204

[Close]

BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-36
Identity = 80/162 (49.38%), Postives = 106/162 (65.43%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVS 65
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H++FGASN+ K LQE+P  QR DAV+
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASITFPMT 125
           SMVYEA AR++DPVYGC G I  LQ +VS+L+ QL  A+ E++ +Q ++     + + M 
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNM- 151

Query: 126 TTQMDQDEQNLMILSN-----ADSSNSFHVFQAADDHYPLWT 163
             Q  Q++ N+   SN      D SN+       D   PLWT
Sbjct: 152 DQQQKQEQDNMSFESNDLGFLEDKSNTNSSMLWWD---PLWT 189

[Close]

BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 4.5e-35
Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVS 65
           +PCA+CKLLRRRCA++C F+PYF PH+P KFA VHK+FGASNVSKML EVP  QRADA +
Sbjct: 44  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query: 66  SMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQ 115
           S+VYEA+ R++DPVYGC+G I  LQ +V  L+ +L A R+EIL  + R+
Sbjct: 104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQRE 152

[Close]

BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL
Match: A0A0A0KBK5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60
           MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120
           ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120

Query: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 163
           TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT
Sbjct: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 162

[Close]

BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL
Match: A0A1S3CKM4 (LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 142/162 (87.65%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60
           MGVGSSPCASCKLLRRRCAKDCIFAPYFPP DPLKFAIVHKIFGASNVSKMLQEVP+DQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120
           ADAVSSMVYEASARMQDPVYGCVG I FLQNEVS+LEIQLGAA+AEIL LQMR QQE S 
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMR-QQETST 120

Query: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 163
           TFP TTTQMDQDEQNLMI SN DSSNS H+FQA +D+Y +WT
Sbjct: 121 TFPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161

[Close]

BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL
Match: A0A6J1L5Y7 (LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111499469 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.7e-58
Identity = 121/162 (74.69%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VS+LE+QL AA+AEIL  QM QQQ AS 
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQM-QQQAASA 120

Query: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 163
           +FPM  TQM+Q +QNL+ LSNADS NS       +D+  LW+
Sbjct: 121 SFPM--TQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL
Match: A0A6J1G7F7 (LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111451558 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.6e-57
Identity = 120/162 (74.07%), Postives = 135/162 (83.33%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VS+LE+QL AA+AEIL  QM QQQ A  
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQM-QQQAAPA 120

Query: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 163
           +FPM  TQM+Q +QNL+ LSNADS NS       +D+  LW+
Sbjct: 121 SFPM--TQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL
Match: A0A6S7PXZ7 (LOB domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS39595 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.8e-48
Identity = 111/177 (62.71%), Postives = 130/177 (73.45%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP DP KFAIVHK+FGASNVSKMLQE+PV QR
Sbjct: 1   MGSGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQ-QEAS 120
           ADAVSS+VYEA+ARM+DPVYGCVG I +LQN+VSQL++QL  A+AEIL +QM+Q+  E  
Sbjct: 61  ADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQEPHELP 120

Query: 121 ITFPMTTTQMDQDEQNLMIL-SNAD-------------SSNSFHVFQAADDHYPLWT 163
            T P   + MD D ++L++  SN               SSN+ HV Q       LWT
Sbjct: 121 TTHP---SMMDCDAKSLLLAGSNTSDFSDQMPQFLSYTSSNNNHVIQDPLKRESLWT 174

[Close]

BLAST of CsaV3_6G015930 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 191.4 bits (485), Expect = 5.6e-49
Identity = 97/154 (62.99%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 2   GVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRA 61
           G GSSPCASCKLLRRRCAKDCIFAPYFPP DP KFAIVHK+FGASNVSKMLQE+PV QRA
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASIT 121
           DAV+S+V+EA+AR++DPVYGCVG I +LQN+VSQL++QL  A+AEIL +QM  Q E ++ 
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM--QNEPTLQ 122

Query: 122 FPMTTTQMDQDEQNLMI----LSNADSSNSFHVF 152
                 ++DQD + L++    ++N +++N+ + F
Sbjct: 123 SHHQVLELDQDHKALLLNNNNINNCNTNNNNNNF 154

[Close]

BLAST of CsaV3_6G015930 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 158.3 bits (399), Expect = 5.2e-39
Identity = 75/119 (63.03%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP  +P KFA VH++FGASNV+KMLQE+P+ QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  SSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASITFP 124
           SSMVYEA+AR++DPVYGCVG I  LQ ++  L+ QL  A+AE++ L++RQ    S  FP
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ----STNFP 125

[Close]

BLAST of CsaV3_6G015930 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 154.8 bits (390), Expect = 5.8e-38
Identity = 75/151 (49.67%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVS 65
           SPCA+CK+LRRRCA  C+ APYFPP DP KF I H++FGASN+ K LQE+P  QR DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASITFPMT 125
           SMVYEA ARM+DPVYGC G I  LQ +VS+L+ QL   + E++ +Q+++     + + M 
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNME 173

Query: 126 TTQMDQDEQNLMILSNADSSNSFHVFQAADD 157
            T++   EQ    +S   S  S   F ++ D
Sbjct: 174 QTKLSVQEQGQQKMSFESSFESGDEFISSPD 204

[Close]

BLAST of CsaV3_6G015930 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 154.1 bits (388), Expect = 9.9e-38
Identity = 80/162 (49.38%), Postives = 106/162 (65.43%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVS 65
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H++FGASN+ K LQE+P  QR DAV+
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASITFPMT 125
           SMVYEA AR++DPVYGC G I  LQ +VS+L+ QL  A+ E++ +Q ++     + + M 
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNM- 151

Query: 126 TTQMDQDEQNLMILSN-----ADSSNSFHVFQAADDHYPLWT 163
             Q  Q++ N+   SN      D SN+       D   PLWT
Sbjct: 152 DQQQKQEQDNMSFESNDLGFLEDKSNTNSSMLWWD---PLWT 189

[Close]

BLAST of CsaV3_6G015930 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 149.1 bits (375), Expect = 3.2e-36
Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVS 65
           +PCA+CKLLRRRCA++C F+PYF PH+P KFA VHK+FGASNVSKML EVP  QRADA +
Sbjct: 44  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query: 66  SMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQ 115
           S+VYEA+ R++DPVYGC+G I  LQ +V  L+ +L A R+EIL  + R+
Sbjct: 104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQRE 152

The following BLAST results are available for this feature:

BLAST of CsaV3_6G015930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143222.1	2.7e-85	100.00	LOB domain-containing protein 12 [Cucumis sativus] >KGN47050.1 hypothetical prot...	[more]
XP_008463841.1	4.0e-73	87.65	PREDICTED: LOB domain-containing protein 12-like [Cucumis melo]	[more]
XP_038902597.1	4.7e-66	82.10	LOB domain-containing protein 12 [Benincasa hispida]	[more]
XP_023006803.1	1.8e-57	74.69	LOB domain-containing protein 12-like [Cucurbita maxima]	[more]
KAG6605396.1	4.0e-57	74.07	LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of CsaV3_6G015930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBW3	7.9e-48	62.99	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	7.4e-38	63.03	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9SK08	8.2e-37	49.67	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q9LQR0	1.4e-36	49.38	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q8L5T5	4.5e-35	63.30	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of CsaV3_6G015930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBK5	1.3e-85	100.00	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=3 SV...	[more]
A0A1S3CKM4	1.9e-73	87.65	LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE...	[more]
A0A6J1L5Y7	8.7e-58	74.69	LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC11149946...	[more]
A0A6J1G7F7	5.6e-57	74.07	LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111451...	[more]
A0A6S7PXZ7	2.8e-48	62.71	LOB domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS39595 PE=...	[more]

BLAST of CsaV3_6G015930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30130.1	5.6e-49	62.99	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	5.2e-39	63.03	LOB domain-containing protein 4	[more]
AT2G28500.1	5.8e-38	49.67	LOB domain-containing protein 11	[more]
AT1G07900.1	9.9e-38	49.38	LOB domain-containing protein 1	[more]
AT2G40470.1	3.2e-36	63.30	LOB domain-containing protein 15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	PANTHER	PTHR31301:SF97	LOB DOMAIN-CONTAINING PROTEIN 12-LIKE	coord: 1..149
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..149
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 7..103 e-value: 2.3E-39 score: 134.0
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 6..107 score: 25.425465

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G015930.1	CsaV3_6G015930.1	mRNA