CsaV3_6G002630 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G002630
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 1829644 .. 1830310 (-)
RNA-Seq Expression	CsaV3_6G002630
Synteny	CsaV3_6G002630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACACCAACACTCACACTTCTAAATTAATCATCTATCTATCTATCTAATTACTTCCTTCTAAGCAATGGGAGGCCACAAGCACAAGAAATCTCATTCTTCTTTTTCTTTCTTTAGTTTTTTAAAATCTAAATGGAGCAGAAAAGGAGACCACTATGACCACGGTGGCTCATGGCTAGACGAGAAGTCGAGATCGGGCAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAAATAATGTGTAAATAATTTTTTGCATATAGTATTAGTTCATTAAACTTAGCTTCGTTTAATTATATGATACTTTAGAAGAAAACTTTATATCAACACTCAAGTAATGTGATGTTGAATCCAGTATTGAAAGAGTGATAGTAAAATGTATTCGTAAAAGTTATATAATATGACTTTGTTCTTTATCCTAAAAATAAAGGCACAACTTTTTTCCTTCTTTTTTCTCATTGCTAATTATGATCTCTAAATTATCTTATTTGTATTCTTTACAATTTTTAATCAGTTCAGTACTCCACCAATGATTAACTTTTAGTGACTATTTG

mRNA sequence

ATGGGAGGCCACAAGCACAAGAAATCTCATTCTTCTTTTTCTTTCTTTAGTTTTTTAAAATCTAAATGGAGCAGAAAAGGAGACCACTATGACCACGGTGGCTCATGGCTAGACGAGAAGTCGAGATCGGGCAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAA

Coding sequence (CDS)

ATGGGAGGCCACAAGCACAAGAAATCTCATTCTTCTTTTTCTTTCTTTAGTTTTTTAAAATCTAAATGGAGCAGAAAAGGAGACCACTATGACCACGGTGGCTCATGGCTAGACGAGAAGTCGAGATCGGGCAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAA

Protein sequence

MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV*

Homology

[Close]

BLAST of CsaV3_6G002630 vs. NCBI nr
Match: KGN45868.1 (hypothetical protein Csa_004803 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 94
          PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

[Close]

BLAST of CsaV3_6G002630 vs. NCBI nr
Match: KAA0035006.1 (hypothetical protein E6C27_scaffold57G00470 [Cucumis melo var. makuwa] >TYK02346.1 hypothetical protein E5676_scaffold155G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGGHKHKKSHSSFSFFSF KSKWS+K DHYDHGGSWLD+KSRSGKVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 94
          PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

[Close]

BLAST of CsaV3_6G002630 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 5.9e-37
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KSK  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of CsaV3_6G002630 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G ++ KK+H+SFS FSF KS+  RKGDH +H GS LDE  RSGKVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of CsaV3_6G002630 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G ++ KKSHSSFS FSF KS+  RKGD+ +H GS LDE  RSGKVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIYRNRVFESERQT+TI  N
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTITISPN 93

[Close]

BLAST of CsaV3_6G002630 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.1e-48
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 94
          PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

[Close]

BLAST of CsaV3_6G002630 vs. ExPASy TrEMBL
Match: A0A5A7SYN4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00380 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.5e-46
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGGHKHKKSHSSFSFFSF KSKWS+K DHYDHGGSWLD+KSRSGKVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 94
          PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

[Close]

BLAST of CsaV3_6G002630 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.5e-38
Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KS+  RKGDHYDHGG+WLDE  RS KVWPSDEDKAHHWVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of CsaV3_6G002630 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KSK  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of CsaV3_6G002630 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.6e-33
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G ++ KK+H+SFS FSF KS+  RKGDH +H GS LDE  RSGKVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of CsaV3_6G002630 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG     S   FS FSF K   +R+    +  GSW D+   + K   SDEDK  +WVAE
Sbjct: 1  MGGKNRSHSSKRFSLFSFFK---TRRSHRVEADGSW-DDFGYTRKAMASDEDK-RYWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVT 89
          PGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 PGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CsaV3_6G002630 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-09
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 24 SRKGDHY--DHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFE 83
          +R+  H+  +   SW D+   + K W SDEDK  +WVAEPGIDRKA  +I + + +RV E
Sbjct: 3  ARRSSHHRVEADASW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSE 62

Query: 84 SERQTV 88
          SERQT+
Sbjct: 63 SERQTL 66

The following BLAST results are available for this feature:

BLAST of CsaV3_6G002630 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45868.1	1.3e-47	100.00	hypothetical protein Csa_004803 [Cucumis sativus]	[more]
KAA0035006.1	1.6e-45	95.70	hypothetical protein E6C27_scaffold57G00470 [Cucumis melo var. makuwa] >TYK02346...	[more]
KGN45870.1	5.9e-37	83.70	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KGN45869.1	1.2e-32	79.12	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KAA0035003.1	2.0e-32	79.12	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]

BLAST of CsaV3_6G002630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G002630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8V3	6.1e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]
A0A5A7SYN4	7.5e-46	95.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KBW1	7.5e-38	84.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K7Y2	2.9e-37	83.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KAK6	5.6e-33	79.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]

BLAST of CsaV3_6G002630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	1.2e-11	46.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	5.6e-09	48.48	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..89
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G002630.1	CsaV3_6G002630.1	mRNA