CsaV3_5G035540 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G035540
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionR3H domain-containing protein 2-like
Locationchr5: 28105377 .. 28108661 (+)
RNA-Seq ExpressionCsaV3_5G035540
SyntenyCsaV3_5G035540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTTCTCTCCATTTCTTCTCTGGCTGTGATCGTAATCGCTCCGGAAAATTTACCGTCTCCATCAATCGCGCCAAATTCCGTCCCTCGATTAATTTTGGTGTACGTTCGCTTTCCGATTCCGAAATCCTAATTTCTTTAGATTTAGTGTGCAATCGACGTTCTCGATCACCTAATGCCTTCATTGCTGCCAGGAGTTTAGAGTTTCGGTCCTTTGCTTTACCACGGAGGGCTCTGCAGCGGAAAACATCGAAGGTCCTGAGTCGTGGAAGGTCGCAGAGTTGGATGAGGCCGTGAGACAACGGAATTCCATATTAGAGGTATTAAATATTCTGCCGACGGTGCTTCTCTCTCAGATCATTCGGTTCCTGCTGAAGTGTTTGAAGATTCTATCAGTCAGGTTGATCGGTTCCTAGCGTAGCCTTTCGGAATCCTTAAGTAAGCGATTTATACTTTTCTGAACCATTCCTTTAGATTTTGTGTGCAATCGAAGTTCTCCATCACCTAGTGCCTCCATCGCTGCCAGGAGTTTAGATTTCGGTCCTTTGATTTACCATGGAGGGCTCTGCAGTGGAGGATATTGAAGGTCCTGAGTCATGGAAGGTGGCAGAGGATGAGGCCGTGAGACAATGGAATTTCATATGAGAGGCATTATATATTCTTTCGACGGTGCTTCTCTCTCAGATTGTTCGATTCCTGCTGAAATGTTTGAAGATTCTATCAGTCAGGTTGATCGGTTCCTAGCGAAGCCTTTCAGAATCCTCAAGTAAGCGATTTATCCTTTTCTGAACCATTCCACTTGGCATTTTGTTATTTGTGTGATATCCGATTGTTTAGGTGTGATTTCATGGAAGAATTTTCTAATAGCTATTTTGAGAGGTAGATAGAATAAAATTGCTTATGATATTATACGTTTTCTTTTCTTTTCCGTATTCACACACGTCTACTTTGATCGCACAGACCAGATCCTGTAGTCTACGTAGTTCTGATTGTATGGTAGGTTTTCTTTTCTTTTCAATAAGCATGTACGTGTATGTTGAGTTCTCAGAGGCAGTGTTCTAACTAGTTTTTCCATTTGATTTCTGTCAACAACTCCTTAATAATAGTTTTTTCTCTACAATGTTGATAGAATAAATTGCAGACTATATCGTAGGTTTTCTATCCTTTCCTATATGCATACATGTCTACATTAAGTTCACAGTGGTGGTGATCTAAGTAGTTTTTTCTATTGATTCGCTGAAGATGAATCTGCTAATAAGTTTTTTGGTAAAACGAAAATTGAATAAAACTGGTGACCAGATATCGTTAGTTATTCCTTCATGTTCTATATATGAACGTCTACATTGAGTTCATAGACGTGGTGTTCTCAGTAGTTTCTCCATATGTTTGACATTTTGATATGTCATGCTAATGCATTCGATGCTGATGCTATTCAGTTCTTTTCATTAGTATGTTATAGAGAATCCTTGCATTATCAACCATAGCTTGTTATTTACTAAGTACGTTTGCTGTTGTTGGTTTATTAGTGTTGTTGCTTGGTTAGTTAATTTGATGGAAAAGCCTTCGTAAATAGAGTCAAGCCTCTGTATACATTACTTTTAGTTAAATTATAAATTTAGTCCTTGAACTCTGACATTTGGATTTATTTAGTTAATGAACTTTTTAAAATATCATATCGATTTCTTTATATTCAAATTTCTGTCTAATAAGTCTTTAAACTTTAAACTTTTTTTGTTCAAGAAGTATAAAATTTTAAAAACTCAATTGATTTTTGAAATTTATGTTACTAGGAAACTCAAACTTTCAATTTTGTATCTAGTAGAATAGTGAATTTAAAAAAATAATAATAAAAGTTGTGACACTAAATAAAATTCACAAATTTAGAATTTAGTAAATTTGAAAACGTAGAGTTAACGTGTTTCTGCTGTGATGAACCATATGGTCCTCCAATAGAACTATATTGTCCTTCAACAGAGTTATTTGGCCTTATAGTACAGAGTTATTTGGCCTTATAGTGCAAAAGTTGATCCACTCCATGTTAGGGATATTTGCGAACTCCTCTCAGTATCCCCTTCAGCAATTTGGAATGCCTTTTATTTATCGTCGTAAGTTCATCAGCCCTTTCTCATGCATAACTCTCTTCATTCAACCTCATCTTTTGATATGAATGAACAGTAAAGTAGTAAAGCCTTCCTTCTGCAAAATTTATTTTTGCTCTCTCCCTTTAGATAATACATTCAACATTTCATTTACCGATCCCTTTTTATCCTGCCTATTTTCAGCATTGATCAGGTTTGTTTCATTAATTTATTTATTTCTTGTAGATCTTTTGCCTTCAGCTATTGGATTAACACTGAATTCAGTAGAAACCAATGACTTGTTACTTTTATGAACTTTATATTGATACTTGATTCCAATGGTTATTGCCTGTTCTAAGATGATCGTGAATGTCAATTAGATTGTAAACTGCGCCACCATTCCCTTTTGTGCCTATGACGTCGAAAGACTTATAGTAGCATCTGTCGTTGGGCATGTCTACTACGAAGGTATTTACTCTCGTTTCAACATATATTATGTCCATCTCCATTCTTCATTCTCCAAAAGAAATGGGCAATTTTTTTTAATAAAAAAAGTATAACATATATAACGATTTTGTTTATTTTTTAAAATTTCTTTCATCTCAATTAATACAGTTAATCAGCATAGTTATAACGTGGTCATTTGGCATGTAATTTTTTTAGGTCCATGGTTTCTTATGACACACATATTTGCTTGAGAGCATCGTTATGTATGAGTTCCTAAATATGTATTCCTCGCCACTACTTGATAATATGTATTTTCCATCACTATTTAAGTTTATGAGATGCTTTGCACATTCAAGCGTCAACATCCCAAGGTACGAATTCCTTTTACCACTCGTTCGGAGTTTATTGCATGGGTAATGTGTCATTGGTTTGTGTATACATACCTTCCTTTTCTTATGATTTAAAAGATTAGATTGCAAAATAAAAAAATTAGCGTAAATTAGGCCTTTCCACCCTATTTTGTAGAAAGGGTTATTTCTAAGTGCATTCATCATGAGCCAATAGAACTGTCTTAGGAAATTATATTTAAAGGTAAAACTTAAAAGTGGTATCTTCATTTTATTTTATTCTTTTCAAATTTCATGAACTTGATTTTTTTCCTACTCGTTATCTTTTTTATTATTTATTTCAAATTAGATTGTGCCGTGTGTAACCTTCAAAATTTATATTTGCAACCAATGATCATCTATGGTATCTCG

mRNA sequence

ATGCATTTTCTCTCCATTTCTTCTCTGGCTGTGATCGTAATCGCTCCGGAAAATTTACCGTCTCCATCAATCGCGCCAAATTCCGTCCCTCGATTAATTTTGGAGTTTAGAGTTTCGGTCCTTTGCTTTACCACGGAGGGCTCTGCAGCGGAAAACATCGAAGGTCCTGAGTCGTGGAAGGTCGCAGAGTTGGATGAGGCCGTGAGACAACGGAATTCCATATTAGAGGTATTAAATATTCTGCCGACGGTGCTTCTCTCTCAGATCATTCGGTTCCTGCTGAAGTGTTTGAAGATTCTATCAGTCAGGTTGATCGGTTCCTAG

Coding sequence (CDS)

ATGCATTTTCTCTCCATTTCTTCTCTGGCTGTGATCGTAATCGCTCCGGAAAATTTACCGTCTCCATCAATCGCGCCAAATTCCGTCCCTCGATTAATTTTGGAGTTTAGAGTTTCGGTCCTTTGCTTTACCACGGAGGGCTCTGCAGCGGAAAACATCGAAGGTCCTGAGTCGTGGAAGGTCGCAGAGTTGGATGAGGCCGTGAGACAACGGAATTCCATATTAGAGGTATTAAATATTCTGCCGACGGTGCTTCTCTCTCAGATCATTCGGTTCCTGCTGAAGTGTTTGAAGATTCTATCAGTCAGGTTGATCGGTTCCTAG

Protein sequence

MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWKVAELDEAVRQRNSILEVLNILPTVLLSQIIRFLLKCLKILSVRLIGS*
Homology
[Close]
BLAST of CsaV3_5G035540 vs. NCBI nr
Match: KGN52196.1 (hypothetical protein Csa_008631 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 3.2e-47
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWK 60
           MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWK
Sbjct: 1   MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWK 60

Query: 61  VAELDEAVRQRNSILEVLNILPTVLLSQIIRFLLKCLKILSVRLIGS 108
           VAELDEAVRQRNSILEVLNILPTVLLSQIIRFLLKCLKILSVRLIGS
Sbjct: 61  VAELDEAVRQRNSILEVLNILPTVLLSQIIRFLLKCLKILSVRLIGS 107

[Close]
BLAST of CsaV3_5G035540 vs. NCBI nr
Match: KAA0034658.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-10
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 31  RLILEFRVSVLCFTTEGSAAENIEGPESWKVAELDEAVRQRNSILEVLNILPTVLLSQII 90
           R   EFRVSV CFT EGSAAE+IE PESWKVAE DEAVRQ NSILEV   L +  LS+ +
Sbjct: 647 RCCQEFRVSVFCFTVEGSAAEDIEDPESWKVAEFDEAVRQWNSILEVDRFLRS--LSESL 706

Query: 91  RF 93
           +F
Sbjct: 707 KF 706

[Close]
BLAST of CsaV3_5G035540 vs. ExPASy TrEMBL
Match: A0A0A0KWM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615190 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWK 60
           MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWK
Sbjct: 1   MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWK 60

Query: 61  VAELDEAVRQRNSILEVLNILPTVLLSQIIRFLLKCLKILSVRLIGS 108
           VAELDEAVRQRNSILEVLNILPTVLLSQIIRFLLKCLKILSVRLIGS
Sbjct: 61  VAELDEAVRQRNSILEVLNILPTVLLSQIIRFLLKCLKILSVRLIGS 107

[Close]
BLAST of CsaV3_5G035540 vs. ExPASy TrEMBL
Match: A0A5D3CFX4 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002020 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.0e-11
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 31  RLILEFRVSVLCFTTEGSAAENIEGPESWKVAELDEAVRQRNSILEVLNILPTVLLSQII 90
           R   EFRVSV CFT EGSAAE+IE PESWKVAE DEAVRQ NSILEV   L +  LS+ +
Sbjct: 647 RCCQEFRVSVFCFTVEGSAAEDIEDPESWKVAEFDEAVRQWNSILEVDRFLRS--LSESL 706

Query: 91  RF 93
           +F
Sbjct: 707 KF 706

The following BLAST results are available for this feature:
BLAST of CsaV3_5G035540 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52196.13.2e-47100.00hypothetical protein Csa_008631 [Cucumis sativus][more]
KAA0034658.11.9e-1067.74R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H ... [more]
BLAST of CsaV3_5G035540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G035540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWM81.6e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615190 PE=4 SV=1[more]
A0A5D3CFX49.0e-1167.74R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of CsaV3_5G035540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G035540.1CsaV3_5G035540.1mRNA