CsaV3_5G010930 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G010930
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionauxilin-like protein 1
Locationchr5: 6948633 .. 6948919 (-)
RNA-Seq ExpressionCsaV3_5G010930
SyntenyCsaV3_5G010930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTATCGAGCATCGTCGACCGTTTACAACAAGTTTTCAAATGCTCATAGATACGATGGCGTCTTTACTGCTCCGTTGAAGCACGAAGCTCCGTCCTTCTCTACTCGAGTTGAGGGTTACAGAAAGATTTTTCGTGGTTCGCCAGTTTCTTCTATTATGATTCTCAATGTTCCAACACTGAGCTATAAGAAGTTTCAGACACTGTGCGTAAGGGTTTGAGGGCCTCTTCCATTTTTTTTTTCTACTTTTACTATATATATATATATAACTCTAAACAATAAATC

mRNA sequence

ATGGAGTATCGAGCATCGTCGACCGTTTACAACAAGTTTTCAAATGCTCATAGATACGATGGCGTCTTTACTGCTCCGTTGAAGCACGAAGCTCCGTCCTTCTCTACTCGAGTTGAGGGTTACAGAAAGATTTTTCGTGGTTCGCCAGTTTCTTCTATTATGATTCTCAATGTTCCAACACTGAGCTATAAGAAGTTTCAGACACTGTGCGTAAGGGTTTGA

Coding sequence (CDS)

ATGGAGTATCGAGCATCGTCGACCGTTTACAACAAGTTTTCAAATGCTCATAGATACGATGGCGTCTTTACTGCTCCGTTGAAGCACGAAGCTCCGTCCTTCTCTACTCGAGTTGAGGGTTACAGAAAGATTTTTCGTGGTTCGCCAGTTTCTTCTATTATGATTCTCAATGTTCCAACACTGAGCTATAAGAAGTTTCAGACACTGTGCGTAAGGGTTTGA

Protein sequence

MEYRASSTVYNKFSNAHRYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIMILNVPTLSYKKFQTLCVRV*
Homology
BLAST of CsaV3_5G010930 vs. NCBI nr
Match: KGN50735.1 (hypothetical protein Csa_005817 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 4.1e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MEYRASSTVYNKFSNAHRYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIMILNVPT 60
          MEYRASSTVYNKFSNAHRYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIMILNVPT
Sbjct: 1  MEYRASSTVYNKFSNAHRYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIMILNVPT 60

Query: 61 LSYKKFQTLCVRV 74
          LSYKKFQTLCVRV
Sbjct: 61 LSYKKFQTLCVRV 73

BLAST of CsaV3_5G010930 vs. NCBI nr
Match: XP_008466544.1 (PREDICTED: auxilin-like protein 1 [Cucumis melo] >ADN34187.1 auxilin-like protein [Cucumis melo subsp. melo] >KAA0041573.1 auxilin-like protein 1 [Cucumis melo var. makuwa] >TYK19683.1 auxilin-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 51/72 (70.83%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MEYRASSTVYNKFSNAHR------YDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIM 60
          MEYRASSTVYNKFSNA        YDGVF AP KH AP FS RVE YR+IF GS VSSI 
Sbjct: 1  MEYRASSTVYNKFSNARGFNDKSVYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIP 60

Query: 61 ILNVPTLSYKKF 67
          IL+VP LS KKF
Sbjct: 61 ILDVPALSDKKF 72

BLAST of CsaV3_5G010930 vs. NCBI nr
Match: XP_031738765.1 (auxilin-like protein 1 [Cucumis sativus] >KGN59981.1 hypothetical protein Csa_001686 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-15
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MEYRASSTVYNKFSNAH------RYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIM 60
          M+YRASSTVYNKFSNA        YDGVF AP KH AP FS RVE YR+IF GS VSSI 
Sbjct: 1  MDYRASSTVYNKFSNARSFNDKSAYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIP 60

Query: 61 ILNVPTLSYKKF 67
          IL+VP LS KKF
Sbjct: 61 ILDVPALSDKKF 72

BLAST of CsaV3_5G010930 vs. NCBI nr
Match: XP_038897761.1 (auxilin-like protein 1 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-14
Identity = 48/72 (66.67%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 1  MEYRASSTVYNKFSNAH------RYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIM 60
          MEYRASST+Y KFSNA        YDGVF  P KH AP FS RVE YR+IF GS VSSI 
Sbjct: 1  MEYRASSTIYKKFSNARSFNDKSAYDGVFATPSKHGAPVFSARVEDYREIFGGSRVSSIP 60

Query: 61 ILNVPTLSYKKF 67
          IL+VP LS KKF
Sbjct: 61 ILDVPALSDKKF 72

BLAST of CsaV3_5G010930 vs. NCBI nr
Match: XP_022132309.1 (auxilin-like protein 1 isoform X2 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 2.5e-14
Identity = 49/71 (69.01%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 1  MEYRASSTVYNKFSNAH------RYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIM 60
          MEYRASSTVY KFSNA        YDGVF AP KH AP FS RVE YR+IF GS VSSI 
Sbjct: 1  MEYRASSTVYKKFSNARSFNDKSAYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIP 60

Query: 61 ILNVPTLSYKK 66
          IL+VP LS KK
Sbjct: 61 ILDVPALSDKK 71

BLAST of CsaV3_5G010930 vs. ExPASy TrEMBL
Match: A0A0A0KM50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222085 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MEYRASSTVYNKFSNAHRYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIMILNVPT 60
          MEYRASSTVYNKFSNAHRYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIMILNVPT
Sbjct: 1  MEYRASSTVYNKFSNAHRYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIMILNVPT 60

Query: 61 LSYKKFQTLCVRV 74
          LSYKKFQTLCVRV
Sbjct: 61 LSYKKFQTLCVRV 73

BLAST of CsaV3_5G010930 vs. ExPASy TrEMBL
Match: A0A5A7TEJ5 (Auxilin-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00790 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.4e-16
Identity = 51/72 (70.83%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MEYRASSTVYNKFSNAHR------YDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIM 60
          MEYRASSTVYNKFSNA        YDGVF AP KH AP FS RVE YR+IF GS VSSI 
Sbjct: 1  MEYRASSTVYNKFSNARGFNDKSVYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIP 60

Query: 61 ILNVPTLSYKKF 67
          IL+VP LS KKF
Sbjct: 61 ILDVPALSDKKF 72

BLAST of CsaV3_5G010930 vs. ExPASy TrEMBL
Match: E5GCI8 (Auxilin-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.4e-16
Identity = 51/72 (70.83%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MEYRASSTVYNKFSNAHR------YDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIM 60
          MEYRASSTVYNKFSNA        YDGVF AP KH AP FS RVE YR+IF GS VSSI 
Sbjct: 1  MEYRASSTVYNKFSNARGFNDKSVYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIP 60

Query: 61 ILNVPTLSYKKF 67
          IL+VP LS KKF
Sbjct: 61 ILDVPALSDKKF 72

BLAST of CsaV3_5G010930 vs. ExPASy TrEMBL
Match: A0A1S3CRM9 (auxilin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103503929 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.4e-16
Identity = 51/72 (70.83%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MEYRASSTVYNKFSNAHR------YDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIM 60
          MEYRASSTVYNKFSNA        YDGVF AP KH AP FS RVE YR+IF GS VSSI 
Sbjct: 1  MEYRASSTVYNKFSNARGFNDKSVYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIP 60

Query: 61 ILNVPTLSYKKF 67
          IL+VP LS KKF
Sbjct: 61 ILDVPALSDKKF 72

BLAST of CsaV3_5G010930 vs. ExPASy TrEMBL
Match: A0A0A0LIZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G859680 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MEYRASSTVYNKFSNAH------RYDGVFTAPLKHEAPSFSTRVEGYRKIFRGSPVSSIM 60
          M+YRASSTVYNKFSNA        YDGVF AP KH AP FS RVE YR+IF GS VSSI 
Sbjct: 1  MDYRASSTVYNKFSNARSFNDKSAYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIP 60

Query: 61 ILNVPTLSYKKF 67
          IL+VP LS KKF
Sbjct: 61 ILDVPALSDKKF 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN50735.14.1e-33100.00hypothetical protein Csa_005817 [Cucumis sativus][more]
XP_008466544.11.3e-1570.83PREDICTED: auxilin-like protein 1 [Cucumis melo] >ADN34187.1 auxilin-like protei... [more]
XP_031738765.12.2e-1569.44auxilin-like protein 1 [Cucumis sativus] >KGN59981.1 hypothetical protein Csa_00... [more]
XP_038897761.11.9e-1466.67auxilin-like protein 1 [Benincasa hispida][more]
XP_022132309.12.5e-1469.01auxilin-like protein 1 isoform X2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KM502.0e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222085 PE=4 SV=1[more]
A0A5A7TEJ56.4e-1670.83Auxilin-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
E5GCI86.4e-1670.83Auxilin-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A1S3CRM96.4e-1670.83auxilin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103503929 PE=4 SV=1[more]
A0A0A0LIZ61.1e-1569.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G859680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G010930.1CsaV3_5G010930.1mRNA