CsaV3_4G030610 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G030610
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 20566702 .. 20567023 (+)
RNA-Seq ExpressionCsaV3_4G030610
SyntenyCsaV3_4G030610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTTGTGCGCTACAGTATCTGTACAGCTTTTCCTCATCTGTTCAGGCTTACTCGCTCCCATGATGCTAGGGTTGTTGATGTTTGGGTTCAAGACACTGAGGCTTGGGATTTGCAACTTTGTCAAAATCTAAATGATTTAGAATCTATTGAGTGGGCTGCTTTGTCCCTTTTGTTACCTTCAGTCCATCTCCGCCTTTGCTTGATTCTTGGATTCGGACCATTGATCCTTCCTCCACATTTACTGTTAAATCTCTTATGGATGATTTGGTGGGATCTATTGACTTTCATGTTAAGGAATTTTATTCTGCTATTTAA

mRNA sequence

ATGGCTTCCTTGTGCGCTACAGTATCTGTACAGCTTTTCCTCATCTGTTCAGGCTTACTCGCTCCCATGATGCTAGGGTTGTTGATGTTTGGTCCATCTCCGCCTTTGCTTGATTCTTGGATTCGGACCATTGATCCTTCCTCCACATTTACTGTTAAATCTCTTATGGATGATTTGGTGGGATCTATTGACTTTCATGTTAAGGAATTTTATTCTGCTATTTAA

Coding sequence (CDS)

ATGGCTTCCTTGTGCGCTACAGTATCTGTACAGCTTTTCCTCATCTGTTCAGGCTTACTCGCTCCCATGATGCTAGGGTTGTTGATGTTTGGTCCATCTCCGCCTTTGCTTGATTCTTGGATTCGGACCATTGATCCTTCCTCCACATTTACTGTTAAATCTCTTATGGATGATTTGGTGGGATCTATTGACTTTCATGTTAAGGAATTTTATTCTGCTATTTAA

Protein sequence

MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLVGSIDFHVKEFYSAI*
Homology
[Close]
BLAST of CsaV3_4G030610 vs. NCBI nr
Match: KGN54795.1 (hypothetical protein Csa_012893 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV 60
          MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV
Sbjct: 1  MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV 60

Query: 61 GSIDFHVKEFYSAI 75
          GSIDFHVKEFYSAI
Sbjct: 61 GSIDFHVKEFYSAI 74

[Close]
BLAST of CsaV3_4G030610 vs. NCBI nr
Match: KAA0044246.1 (hypothetical protein E6C27_scaffold2741G00030 [Cucumis melo var. makuwa] >TYK05482.1 hypothetical protein E5676_scaffold83G001880 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 9.0e-12
Identity = 49/73 (67.12%), Postives = 52/73 (71.23%), Query Frame = 0 

Query: 1  MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV 60
          M  L AT+SVQLFL+CS L  P MLGLL  G     L     TIDPSSTFTVKSLMDDLV
Sbjct: 1  MDFLGATLSVQLFLVCSTLTTPRMLGLLTSGFKTLTLG----TIDPSSTFTVKSLMDDLV 60

Query: 61 GSIDFHVKEFYSA 74
          GS+DF VKE YSA
Sbjct: 61 GSLDFQVKEVYSA 69

[Close]
BLAST of CsaV3_4G030610 vs. ExPASy TrEMBL
Match: A0A0A0KYN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499320 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.4e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV 60
          MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV
Sbjct: 1  MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV 60

Query: 61 GSIDFHVKEFYSAI 75
          GSIDFHVKEFYSAI
Sbjct: 61 GSIDFHVKEFYSAI 74

[Close]
BLAST of CsaV3_4G030610 vs. ExPASy TrEMBL
Match: A0A5A7TQ66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001880 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.3e-12
Identity = 49/73 (67.12%), Postives = 52/73 (71.23%), Query Frame = 0 

Query: 1  MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV 60
          M  L AT+SVQLFL+CS L  P MLGLL  G     L     TIDPSSTFTVKSLMDDLV
Sbjct: 1  MDFLGATLSVQLFLVCSTLTTPRMLGLLTSGFKTLTLG----TIDPSSTFTVKSLMDDLV 60

Query: 61 GSIDFHVKEFYSA 74
          GS+DF VKE YSA
Sbjct: 61 GSLDFQVKEVYSA 69

The following BLAST results are available for this feature:
BLAST of CsaV3_4G030610 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54795.11.7e-31100.00hypothetical protein Csa_012893 [Cucumis sativus][more]
KAA0044246.19.0e-1267.12hypothetical protein E6C27_scaffold2741G00030 [Cucumis melo var. makuwa] >TYK054... [more]
BLAST of CsaV3_4G030610 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G030610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYN58.4e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499320 PE=4 SV=1[more]
A0A5A7TQ664.3e-1267.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_4G030610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G030610.1CsaV3_4G030610.1mRNA