Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGAGGTTAAGATAGCTATTAAATATGGTTGAGATTCATTGACCATGGATGTAGTGTTGGATGCCTTGAAGCCTAGACATCTTGAAATTAAGAAAAAACTCATGGATGGAGAGTTACTCATGACCAGAGGAAGAAGTGACAAAAGGAGCTGGAAAGGCAAAGAGAAGAGTTCCATGATGAATTCAAAGGGGGAAGCTAGAAAGTGTTTCCTTTGTCATAAAGAAGTACACTTTAAGAAACATTGCCATTTGAATAAAAGCAAGGAAGCATCGAGTAGCAAACATGCAGTTGAGACTAGTGCAACAAATGTTATCGATGAGTATGATTCAGTAAAGGTCTTGATGGTGTCTCACAGTGATATGCATGATGCTTGGATCATGGATTCAGGGTGCACGTATCACATGATTTCTAATCAGGATTTTTTGATTGACTTTTAGAAAAATGATGGGAGGAAATCTTATTGGGTGATAGCAATACATGTGATGTCAAGGGAACTGGGTTAGTTAAAATTTCAACACATGATGGGATTATCAGAAAGCTCACAAATGTGAGGTATATTCCAGAACACAAATGCAAT
mRNA sequence
ATGGATGTAGTGTTGGATGCCTTGAAGCCTAGACATCTTGAAATTAAGAAAAAACTCATGGATGGAGAGTTACTCATGACCAGAGGAAGAAGTGACAAAAGGAGCTGGAAAGGCAAAGAGAAGAGTTCCATGATGAATTCAAAGGGGGAAGCTAGAAAGTGTTTCCTTTGTCATAAAGAAGTACACTTTAAGAAACATTGCCATTTGAATAAAAGCAAGGAAGCATCGAGTAGCAAACATGCAGTTGAGACTAGTGCAACAAATGTTATCGATGAGTATGATTCAGTAAAGGTCTTGATGGTGTCTCACAGTGATATGCATGATGCTTGGATCATGGATTCAGGGTGCACGTATCACATGATTTCTAATCAGGATTTTTTGATTGACTTTTAG
Coding sequence (CDS)
ATGGATGTAGTGTTGGATGCCTTGAAGCCTAGACATCTTGAAATTAAGAAAAAACTCATGGATGGAGAGTTACTCATGACCAGAGGAAGAAGTGACAAAAGGAGCTGGAAAGGCAAAGAGAAGAGTTCCATGATGAATTCAAAGGGGGAAGCTAGAAAGTGTTTCCTTTGTCATAAAGAAGTACACTTTAAGAAACATTGCCATTTGAATAAAAGCAAGGAAGCATCGAGTAGCAAACATGCAGTTGAGACTAGTGCAACAAATGTTATCGATGAGTATGATTCAGTAAAGGTCTTGATGGTGTCTCACAGTGATATGCATGATGCTTGGATCATGGATTCAGGGTGCACGTATCACATGATTTCTAATCAGGATTTTTTGATTGACTTTTAG
Protein sequence
MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLMVSHSDMHDAWIMDSGCTYHMISNQDFLIDF*
Homology
BLAST of CsaV3_4G010100 vs. NCBI nr
Match:
KAE8649328.1 (hypothetical protein Csa_014533 [Cucumis sativus])
HSP 1 Score: 261.9 bits (668), Expect = 2.9e-66
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE
Sbjct: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
Query: 61 VHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLMVSHSDMHDAWIMDSGCTYHM 120
VHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLMVSHSDMHDAWIMDSGCTYHM
Sbjct: 61 VHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLMVSHSDMHDAWIMDSGCTYHM 120
Query: 121 ISNQDFLIDF 131
ISNQDFLIDF
Sbjct: 121 ISNQDFLIDF 130
BLAST of CsaV3_4G010100 vs. NCBI nr
Match:
KAE8649708.1 (hypothetical protein Csa_011950 [Cucumis sativus])
HSP 1 Score: 185.3 bits (469), Expect = 3.5e-43
Identity = 95/131 (72.52%), Postives = 108/131 (82.44%), Query Frame = 0
Query: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
M VVLDALK R L+IKK+ DGELLMT+G S+K+SWKGKEKSS SKG+ RKCFLCHKE
Sbjct: 61 MSVVLDALKTRSLKIKKERKDGELLMTKGGSEKKSWKGKEKSSRSKSKGKGRKCFLCHKE 120
Query: 61 VHFKKHCHLNKSKEASSSKHAV-ETSATNVIDEYDSVKVLMVSHSDMHDAWIMDSGCTYH 120
HFKK+C LNK KEASSS++ ETS+ NVID YDSV+VLMVSH D+ DAWIMDSGC YH
Sbjct: 121 GHFKKNCPLNKGKEASSSQYGTGETSSANVIDGYDSVEVLMVSHKDIQDAWIMDSGCIYH 180
Query: 121 MISNQDFLIDF 131
M N+DFLIDF
Sbjct: 181 MTPNRDFLIDF 191
BLAST of CsaV3_4G010100 vs. NCBI nr
Match:
KAA0032095.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42
Identity = 97/130 (74.62%), Postives = 108/130 (83.08%), Query Frame = 0
Query: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
M++VLDALK R+LEIKK+L D EL+M RGRSDK+SWKGKEKSS MN KGEARKCFLCHK
Sbjct: 256 MNIVLDALKTRNLEIKKELKDEELVMARGRSDKKSWKGKEKSSKMNLKGEARKCFLCHKG 315
Query: 61 VHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLMVSHSDMHDAWIMDSGCTYHM 120
FKKHC LNKSKEASSSKHA S NV +EYDSV+VLMVSH D+ +AWIMDSGC YHM
Sbjct: 316 -QFKKHCSLNKSKEASSSKHA--CSEVNVTNEYDSVEVLMVSHRDIQNAWIMDSGCRYHM 375
Query: 121 ISNQDFLIDF 131
N DFLI+F
Sbjct: 376 TPNWDFLINF 382
BLAST of CsaV3_4G010100 vs. NCBI nr
Match:
TYK20957.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 181.0 bits (458), Expect = 6.5e-42
Identity = 96/130 (73.85%), Postives = 107/130 (82.31%), Query Frame = 0
Query: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
M++VLDAL R+LEIKK+L D EL+M RGRSDK+SWKGKEKSS MN KGEARKCFLCHK
Sbjct: 171 MNIVLDALNTRNLEIKKELKDEELVMARGRSDKKSWKGKEKSSKMNLKGEARKCFLCHKG 230
Query: 61 VHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLMVSHSDMHDAWIMDSGCTYHM 120
FKKHC LNKSKEASSSKHA S NV +EYDSV+VLMVSH D+ +AWIMDSGC YHM
Sbjct: 231 -QFKKHCSLNKSKEASSSKHA--CSEVNVTNEYDSVEVLMVSHRDIQNAWIMDSGCRYHM 290
Query: 121 ISNQDFLIDF 131
N DFLI+F
Sbjct: 291 TPNWDFLINF 297
BLAST of CsaV3_4G010100 vs. NCBI nr
Match:
KAA0050828.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 178.7 bits (452), Expect = 3.2e-41
Identity = 96/134 (71.64%), Postives = 108/134 (80.60%), Query Frame = 0
Query: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
M +VLDALK R+LEIKK+ D ELLMT+GRSDK+SWKGKEKS MNSKGEARKCFLCHK
Sbjct: 1 MSIVLDALKTRNLEIKKECKDRELLMTKGRSDKKSWKGKEKSFRMNSKGEARKCFLCHKG 60
Query: 61 VHFKKHCHLNKSKEASSSKHAVETSATNVID----EYDSVKVLMVSHSDMHDAWIMDSGC 120
HFKK+ LNKSKEASSSKH ETS NVID YDSV+VLM+S+ D+HDAWIMDSGC
Sbjct: 61 -HFKKNFPLNKSKEASSSKHVAETSEANVIDGYESGYDSVEVLMMSYRDIHDAWIMDSGC 120
Query: 121 TYHMISNQDFLIDF 131
T+HM N F I+F
Sbjct: 121 TFHMAPNWIFFINF 133
BLAST of CsaV3_4G010100 vs. ExPASy TrEMBL
Match:
A0A5A7SSD9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold223G00740 PE=4 SV=1)
HSP 1 Score: 183.0 bits (463), Expect = 8.3e-43
Identity = 97/130 (74.62%), Postives = 108/130 (83.08%), Query Frame = 0
Query: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
M++VLDALK R+LEIKK+L D EL+M RGRSDK+SWKGKEKSS MN KGEARKCFLCHK
Sbjct: 256 MNIVLDALKTRNLEIKKELKDEELVMARGRSDKKSWKGKEKSSKMNLKGEARKCFLCHKG 315
Query: 61 VHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLMVSHSDMHDAWIMDSGCTYHM 120
FKKHC LNKSKEASSSKHA S NV +EYDSV+VLMVSH D+ +AWIMDSGC YHM
Sbjct: 316 -QFKKHCSLNKSKEASSSKHA--CSEVNVTNEYDSVEVLMVSHRDIQNAWIMDSGCRYHM 375
Query: 121 ISNQDFLIDF 131
N DFLI+F
Sbjct: 376 TPNWDFLINF 382
BLAST of CsaV3_4G010100 vs. ExPASy TrEMBL
Match:
A0A5D3DBE9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1293G00080 PE=4 SV=1)
HSP 1 Score: 181.0 bits (458), Expect = 3.2e-42
Identity = 96/130 (73.85%), Postives = 107/130 (82.31%), Query Frame = 0
Query: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
M++VLDAL R+LEIKK+L D EL+M RGRSDK+SWKGKEKSS MN KGEARKCFLCHK
Sbjct: 171 MNIVLDALNTRNLEIKKELKDEELVMARGRSDKKSWKGKEKSSKMNLKGEARKCFLCHKG 230
Query: 61 VHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLMVSHSDMHDAWIMDSGCTYHM 120
FKKHC LNKSKEASSSKHA S NV +EYDSV+VLMVSH D+ +AWIMDSGC YHM
Sbjct: 231 -QFKKHCSLNKSKEASSSKHA--CSEVNVTNEYDSVEVLMVSHRDIQNAWIMDSGCRYHM 290
Query: 121 ISNQDFLIDF 131
N DFLI+F
Sbjct: 291 TPNWDFLINF 297
BLAST of CsaV3_4G010100 vs. ExPASy TrEMBL
Match:
A0A5A7U6F0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00870 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 1.6e-41
Identity = 96/134 (71.64%), Postives = 108/134 (80.60%), Query Frame = 0
Query: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
M +VLDALK R+LEIKK+ D ELLMT+GRSDK+SWKGKEKS MNSKGEARKCFLCHK
Sbjct: 1 MSIVLDALKTRNLEIKKECKDRELLMTKGRSDKKSWKGKEKSFRMNSKGEARKCFLCHKG 60
Query: 61 VHFKKHCHLNKSKEASSSKHAVETSATNVID----EYDSVKVLMVSHSDMHDAWIMDSGC 120
HFKK+ LNKSKEASSSKH ETS NVID YDSV+VLM+S+ D+HDAWIMDSGC
Sbjct: 61 -HFKKNFPLNKSKEASSSKHVAETSEANVIDGYESGYDSVEVLMMSYRDIHDAWIMDSGC 120
Query: 121 TYHMISNQDFLIDF 131
T+HM N F I+F
Sbjct: 121 TFHMAPNWIFFINF 133
BLAST of CsaV3_4G010100 vs. ExPASy TrEMBL
Match:
A0A5D3DKX3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00400 PE=4 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 1.0e-40
Identity = 98/134 (73.13%), Postives = 106/134 (79.10%), Query Frame = 0
Query: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
M +VLDALK R+LEIKK+ DGELLM RGRSDK SWKGKEKSS MNSKGEARKCF CHK
Sbjct: 182 MSIVLDALKTRNLEIKKERKDGELLMARGRSDKNSWKGKEKSSKMNSKGEARKCFFCHKG 241
Query: 61 VHFKKHCHLNKSKEASSSKHAVETSATNVID----EYDSVKVLMVSHSDMHDAWIMDSGC 120
HFKKHC LNKSK+ASSSKHA S NV D YD V+VLMVSH D+ +A IMDSGC
Sbjct: 242 -HFKKHCPLNKSKKASSSKHA--NSEANVTDGYGSGYDLVEVLMVSHWDIQNARIMDSGC 301
Query: 121 TYHMISNQDFLIDF 131
TYHM NQDFLI+F
Sbjct: 302 TYHMTPNQDFLINF 312
BLAST of CsaV3_4G010100 vs. ExPASy TrEMBL
Match:
A0A5A7VCT5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00080 PE=4 SV=1)
HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 0
Query: 1 MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKE 60
MD+VLDALK RHLEIKK+ MD EL+M RGR DK+SW+GKEKSS MNSKGE RKCFLCHK+
Sbjct: 56 MDIVLDALKARHLEIKKERMDEELVMARGRLDKKSWEGKEKSSRMNSKGEGRKCFLCHKK 115
Query: 61 VHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLMVSHSDMHDAWIMDSGC 117
HFKKHC LNKSKEASSSKH ETS NVID YDS ++LM SH D+ DAW MDS C
Sbjct: 116 GHFKKHCLLNKSKEASSSKHVTETSEANVIDGYDSTEILMASHKDIKDAWSMDSRC 171
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8649328.1 | 2.9e-66 | 100.00 | hypothetical protein Csa_014533 [Cucumis sativus] | [more] |
| KAE8649708.1 | 3.5e-43 | 72.52 | hypothetical protein Csa_011950 [Cucumis sativus] | [more] |
| KAA0032095.1 | 1.7e-42 | 74.62 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| TYK20957.1 | 6.5e-42 | 73.85 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| KAA0050828.1 | 3.2e-41 | 71.64 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SSD9 | 8.3e-43 | 74.62 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5D3DBE9 | 3.2e-42 | 73.85 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5A7U6F0 | 1.6e-41 | 71.64 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5D3DKX3 | 1.0e-40 | 73.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5A7VCT5 | 1.7e-40 | 75.00 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
