CsaV3_4G004580 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G004580
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionTetratricopeptide-like helical
Locationchr4: 2867889 .. 2868092 (+)
RNA-Seq ExpressionCsaV3_4G004580
SyntenyCsaV3_4G004580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGAAAACAAATACTCATCAAATGGAGAACGACGACATAATTCCACCGCATTTATTAGCCGACGAAGACGAAGAAAATATAGCAGCCAAGGAATTATGCATTTCCGGTCACCGAAAAGATGACGGACTGGTG

mRNA sequence

ATGAGGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGAAAACAAATACTCATCAAATGGAGAACGACGACATAATTCCACCGCATTTATTAGCCGACGAAGACGAAGAAAATATAGCAGCCAAGGAATTATGCATTTCCGGTCACCGAAAAGATGACGGACTGGTG

Coding sequence (CDS)

ATGAGGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGAAAACAAATACTCATCAAATGGAGAACGACGACATAATTCCACCGCATTTATTAGCCGACGAAGACGAAGAAAATATAGCAGCCAAGGAATTATGCATTTCCGGTCACCGAAAAGATGACGGACTGGTG

Protein sequence

MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDGLV
Homology
BLAST of CsaV3_4G004580 vs. NCBI nr
Match: KAE8649147.1 (hypothetical protein Csa_014525, partial [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISG 60
          MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISG
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISG 60

Query: 61 HRKDDGLV 69
          HRKDDGLV
Sbjct: 61 HRKDDGLV 68

BLAST of CsaV3_4G004580 vs. NCBI nr
Match: KAE8637184.1 (hypothetical protein CSA_023573, partial [Cucumis sativus] >KAE8637242.1 hypothetical protein CSA_023968, partial [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 7  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 66
          ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG
Sbjct: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 60

Query: 67 LV 69
          LV
Sbjct: 61 LV 62

BLAST of CsaV3_4G004580 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE----NIAAKEL 60
          M VSLEALAMAGIDSNEWAMDAEEW+ N  +ME D  IPPHLLADED+E    +      
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEKD--IPPHLLADEDDEEDEMSTKFPAT 60

Query: 61 CISGHRKDDGL 68
            S  RKDDG+
Sbjct: 61 RCSCCRKDDGV 67

BLAST of CsaV3_4G004580 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-09
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 51
          M VSLEALAMAGI SNEWAMDAEEW+ N  ++END  +PPHLLADED+++
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERN--EIEND--VPPHLLADEDDDD 46

BLAST of CsaV3_4G004580 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-09
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 51
          M VSLEALAMAGI SNEWAMDAEEW+ N  ++END  +PPHLLADED+++
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERN--EIEND--VPPHLLADEDDDD 46

BLAST of CsaV3_4G004580 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.4e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISG 60
          MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISG
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISG 60

Query: 61 HRKDDGLV 69
          HRKDDGLV
Sbjct: 61 HRKDDGLV 68

BLAST of CsaV3_4G004580 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE----NIAAKEL 60
          M VSLEALAMAGIDSNEWAMDAEEW+ N  +ME D  IPPHLLADED+E    +      
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEKD--IPPHLLADEDDEEDEMSTKFPAT 60

Query: 61 CISGHRKDDGL 68
            S  RKDDG+
Sbjct: 61 RCSCCRKDDGV 67

BLAST of CsaV3_4G004580 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 50
          M VSLEALAMAGIDSNEWAMDAEEW+ N       D++PPHLLADE+++
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN-----EIDVVPPHLLADEEDD 44

BLAST of CsaV3_4G004580 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-08
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 50
          M VSLEALAMAGIDSNEW MDA+EW+ N       D++PPHLLADE+++
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERN-----EIDVVPPHLLADEEDD 44

BLAST of CsaV3_4G004580 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-08
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 50
          M VSLEALAMAGIDSNEW MDA+EW+ N       D++PPHLLADE+++
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERN-----EIDVVPPHLLADEEDD 44

BLAST of CsaV3_4G004580 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 7.8e-05
Identity = 20/45 (44.44%), Postives = 29/45 (64.44%), Query Frame = 0

Query: 5  LEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 50
          +EALAMAG+D  EW +  EEW+        + ++P HLLAD+ +E
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWEL------QESVVPLHLLADDFKE 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649147.11.7e-30100.00hypothetical protein Csa_014525, partial [Cucumis sativus][more]
KAE8637184.12.4e-27100.00hypothetical protein CSA_023573, partial [Cucumis sativus] >KAE8637242.1 hypothe... [more]
XP_022943015.12.6e-1063.38uncharacterized protein LOC111447880 [Cucurbita moschata][more]
KAG7015383.14.9e-0972.00hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577295.14.9e-0972.00hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU908.4e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1[more]
A0A6J1FX981.3e-1063.38uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A0A0KWE74.1e-0969.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A5D3CZU02.6e-0865.31Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS682.6e-0865.31Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
Match NameE-valueIdentityDescription
AT2G22320.17.8e-0544.44unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G004580.1CsaV3_4G004580.1mRNA