CsaV3_3G031810 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G031810
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description30-kDa cleavage and polyadenylation specificity factor 30-like
Locationchr3: 27509493 .. 27509677 (+)
RNA-Seq ExpressionCsaV3_3G031810
SyntenyCsaV3_3G031810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCTGCAGCAGAATCTGCTAATGTCCAACAACAGCAAGGTCAACAGTTTGCACCACAAGCCAGCCAGACTCCAGTACAAAGTCTTTCTAATGGCCAGCCTAATCAATTAAACAGAAATGCAATGTCTTTGCCTCAAGGAATATCTAG

mRNA sequence

GTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCTGCAGCAGAATCTGCTAATGTCCAACAACAGCAAGGTCAACAGTTTGCACCACAAGCCAGCCAGACTCCAGTACAAAGTCTTTCTAATGGCCAGCCTAATCAATTAAACAGAAATGCAATGTCTTTGCCTCAAGGAATATCTAG

Coding sequence (CDS)

GTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCTGCAGCAGAATCTGCTAATGTCCAACAACAGCAAGGTCAACAGTTTGCACCACAAGCCAGCCAGACTCCAGTACAAAGTCTTTCTAATGGCCAGCCTAATCAATTAAACAGAAATGCAATGTCTTTGCCTCAAGGAATATCTAG

Protein sequence

VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGISX
Homology
BLAST of CsaV3_3G031810 vs. NCBI nr
Match: KAE8650922.1 (hypothetical protein Csa_000835, partial [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 6.0e-22
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI 60
          VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI
Sbjct: 1  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI 60

Query: 61 S 62
          S
Sbjct: 61 S 61

BLAST of CsaV3_3G031810 vs. NCBI nr
Match: XP_004141524.1 (30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis sativus] >KGN52613.1 hypothetical protein Csa_008573 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 7.4e-20
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 1   VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI 60
           VPALVTQGVTGKPSAAES NVQQQQGQQ APQASQTPVQSLSNGQPNQLNRNA SLPQGI
Sbjct: 203 VPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPVQSLSNGQPNQLNRNATSLPQGI 262

Query: 61  S 62
           S
Sbjct: 263 S 263

BLAST of CsaV3_3G031810 vs. NCBI nr
Match: XP_008459517.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 2.8e-19
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 1   VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI 60
           VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGI
Sbjct: 203 VPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPVQNLSNGQPNQLNRNATSLPQGI 262

Query: 61  S 62
           S
Sbjct: 263 S 263

BLAST of CsaV3_3G031810 vs. NCBI nr
Match: TYK00526.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.8e-19
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 1   VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI 60
           VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGI
Sbjct: 203 VPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPVQNLSNGQPNQLNRNATSLPQGI 262

Query: 61  S 62
           S
Sbjct: 263 S 263

BLAST of CsaV3_3G031810 vs. NCBI nr
Match: KAA0039343.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.8e-19
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 1   VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI 60
           VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGI
Sbjct: 203 VPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPVQNLSNGQPNQLNRNATSLPQGI 262

Query: 61  S 62
           S
Sbjct: 263 S 263

BLAST of CsaV3_3G031810 vs. ExPASy TrEMBL
Match: A0A0A0KSR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647360 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.6e-20
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 1   VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI 60
           VPALVTQGVTGKPSAAES NVQQQQGQQ APQASQTPVQSLSNGQPNQLNRNA SLPQGI
Sbjct: 203 VPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPVQSLSNGQPNQLNRNATSLPQGI 262

Query: 61  S 62
           S
Sbjct: 263 S 263

BLAST of CsaV3_3G031810 vs. ExPASy TrEMBL
Match: A0A5D3BQI0 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001360 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 1   VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI 60
           VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGI
Sbjct: 203 VPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPVQNLSNGQPNQLNRNATSLPQGI 262

Query: 61  S 62
           S
Sbjct: 263 S 263

BLAST of CsaV3_3G031810 vs. ExPASy TrEMBL
Match: A0A5A7T8Q5 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001410 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 1   VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI 60
           VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGI
Sbjct: 203 VPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPVQNLSNGQPNQLNRNATSLPQGI 262

Query: 61  S 62
           S
Sbjct: 263 S 263

BLAST of CsaV3_3G031810 vs. ExPASy TrEMBL
Match: A0A1S3CAV8 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo OX=3656 GN=LOC103498632 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 1   VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGI 60
           VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGI
Sbjct: 203 VPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPVQNLSNGQPNQLNRNATSLPQGI 262

Query: 61  S 62
           S
Sbjct: 263 S 263

BLAST of CsaV3_3G031810 vs. ExPASy TrEMBL
Match: A0A5D3C2W1 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00560 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-13
Identity = 48/60 (80.00%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 2   PALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS 61
           PA VTQGV GKPS AESANVQQQQ QQ A Q SQT +QS+SNGQPNQLNR A SLPQGIS
Sbjct: 206 PAPVTQGVIGKPSTAESANVQQQQVQQPAQQTSQTQIQSVSNGQPNQLNRTATSLPQGIS 265

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650922.16.0e-22100.00hypothetical protein Csa_000835, partial [Cucumis sativus][more]
XP_004141524.17.4e-2095.0830-kDa cleavage and polyadenylation specificity factor 30 [Cucumis sativus] >KGN... [more]
XP_008459517.12.8e-1991.80PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucum... [more]
TYK00526.12.8e-1991.8030-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var... [more]
KAA0039343.12.8e-1991.8030-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KSR63.6e-2095.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647360 PE=4 SV=1[more]
A0A5D3BQI01.4e-1991.8030-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo v... [more]
A0A5A7T8Q51.4e-1991.8030-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo v... [more]
A0A1S3CAV81.4e-1991.8030-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo O... [more]
A0A5D3C2W11.9e-1380.0030-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G031810.1CsaV3_3G031810.1mRNA