CsaV3_3G030570 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G030570
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionTy3-gypsy retrotransposon protein
Locationchr3: 26365420 .. 26365822 (+)
RNA-Seq ExpressionCsaV3_3G030570
SyntenyCsaV3_3G030570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAATAAAGAAGGAAAAAGGTTGGTGTTTTAGATGTGACAAGAAGTTCAGTCCAGAGCACCGCTGTAAAAGACGTGAATTAAACATCATTGTTGTTCAAGAAGGGGAAGACTTAAGTGAAGAAACCGATCAAGTGGGGGAAGAAATCGAAACCAACGGGAATGACGAAATCAATACAGAAATAGCGAATTTGTCGCTAAATTCATTGGTAGGTCTCAATTCATCGAAAACCATAAAAATTAAAGGAGAAATAAGGGGACGTGAGGTTGTGGTGCTGATCGATGGGGGAGCCACGCACAATTTTATTGCAGAAGAGGTAGTCAAAGAGCTAAAAATTTCAGTAGAAACCATGGATGCATATGGGGTTGTTCTAGGAACCGGAGGTGTAGTCCGAGCAACCG

mRNA sequence

ATGCGAATAAAGAAGGAAAAAGGTTGGTGTTTTAGATGTGACAAGAAGTTCAGTCCAGAGCACCGCTGTAAAAGACGTGAATTAAACATCATTGTTGTTCAAGAAGGGGAAGACTTAAGTGAAGAAACCGATCAAGTGGGGGAAGAAATCGAAACCAACGGGAATGACGAAATCAATACAGAAATAGCGAATTTGTCGCTAAATTCATTGGTAGGTCTCAATTCATCGAAAACCATAAAAATTAAAGGAGAAATAAGGGGACGTGAGGTTGTGGTGCTGATCGATGGGGGAGCCACGCACAATTTTATTGCAGAAGAGGTAGTCAAAGAGCTAAAAATTTCAGTAGAAACCATGGATGCATATGGGGTTGTTCTAGGAACCGGAGGTGTAGTCCGAGCAACCG

Coding sequence (CDS)

ATGCGAATAAAGAAGGAAAAAGGTTGGTGTTTTAGATGTGACAAGAAGTTCAGTCCAGAGCACCGCTGTAAAAGACGTGAATTAAACATCATTGTTGTTCAAGAAGGGGAAGACTTAAGTGAAGAAACCGATCAAGTGGGGGAAGAAATCGAAACCAACGGGAATGACGAAATCAATACAGAAATAGCGAATTTGTCGCTAAATTCATTGGTAGGTCTCAATTCATCGAAAACCATAAAAATTAAAGGAGAAATAAGGGGACGTGAGGTTGTGGTGCTGATCGATGGGGGAGCCACGCACAATTTTATTGCAGAAGAGGTAGTCAAAGAGCTAAAAATTTCAGTAGAAACCATGGATGCATATGGGGTTGTTCTAGGAACCGGAGGTGTAGTCCGAGCAACCG

Protein sequence

MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINTEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDAYGVVLGTGGVVRATX
Homology
BLAST of CsaV3_3G030570 vs. NCBI nr
Match: KAE8650876.1 (hypothetical protein Csa_002497, partial [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 60
           MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT
Sbjct: 1   MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 60

Query: 61  EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA 120
           EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA
Sbjct: 61  EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA 120

Query: 121 YGVVLGTGGVVRAT 135
           YGVVLGTGGVVRAT
Sbjct: 121 YGVVLGTGGVVRAT 134

BLAST of CsaV3_3G030570 vs. NCBI nr
Match: XP_031737572.1 (uncharacterized protein LOC116402461 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 60
           MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT
Sbjct: 25  MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 84

Query: 61  EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA 120
           EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA
Sbjct: 85  EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA 144

Query: 121 YGVVLGTGGVVRAT 135
           YGVVLGTGGVVRAT
Sbjct: 145 YGVVLGTGGVVRAT 158

BLAST of CsaV3_3G030570 vs. NCBI nr
Match: KAA0039528.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.2 bits (544), Expect = 7.2e-52
Identity = 109/129 (84.50%), Postives = 119/129 (92.25%), Query Frame = 0

Query: 5   KEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINTEIAN 64
           KEKG CFRCD+KFS EHRCKR ELNII VQE EDLSEETDQVGEEIET GN+E+N EIAN
Sbjct: 9   KEKGLCFRCDEKFSSEHRCKRCELNIIAVQEREDLSEETDQVGEEIETKGNEEVNIEIAN 68

Query: 65  LSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDAYGVV 124
           LSLNSLVGL+S KTIKIKGEIRGRE+VVLIDGGATHNFI +EVVKELKIS+ET+DAYG+V
Sbjct: 69  LSLNSLVGLSSPKTIKIKGEIRGREIVVLIDGGATHNFILKEVVKELKISIETLDAYGIV 128

Query: 125 LGTGGVVRA 134
           LGT G+VRA
Sbjct: 129 LGTRGIVRA 137

BLAST of CsaV3_3G030570 vs. NCBI nr
Match: KAE8647113.1 (hypothetical protein Csa_021721 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 7.2e-36
Identity = 82/96 (85.42%), Postives = 89/96 (92.71%), Query Frame = 0

Query: 1   MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 60
           +RIKKEKG CFRCD+KFS  HRCKRRELNIIVVQEGEDLS++TDQVGEEIETNGN E+NT
Sbjct: 66  VRIKKEKGLCFRCDEKFSLGHRCKRRELNIIVVQEGEDLSDKTDQVGEEIETNGNKEVNT 125

Query: 61  EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDG 97
           +I NLS+NSLVG NS KTIKIKGEIRGREVVVLIDG
Sbjct: 126 KIVNLSINSLVGFNSPKTIKIKGEIRGREVVVLIDG 161

BLAST of CsaV3_3G030570 vs. NCBI nr
Match: XP_024030016.1 (uncharacterized protein LOC112094120 [Morus notabilis])

HSP 1 Score: 127.5 bits (319), Expect = 8.8e-26
Identity = 65/128 (50.78%), Postives = 96/128 (75.00%), Query Frame = 0

Query: 1   MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 60
           +R KKEKG C+RCD K+S  HRC  REL +++V E E+++EE ++  E     G+DE   
Sbjct: 86  IRTKKEKGLCYRCDGKYSFRHRCPNRELQVLLVLEKEEVAEEQEEGAEP----GDDE--- 145

Query: 61  EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA 120
           E+  LSLNS+VGL S KT+K+KG +RG+EV VLID GAT+NFI+ ++V++++++V+ +  
Sbjct: 146 EVVELSLNSVVGLTSPKTMKLKGVLRGKEVTVLIDSGATYNFISVDLVRKMELTVDKIGD 205

Query: 121 YGVVLGTG 129
           YGVV+GTG
Sbjct: 206 YGVVMGTG 206

BLAST of CsaV3_3G030570 vs. ExPASy TrEMBL
Match: A0A5D3CTU6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00600 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.5e-52
Identity = 109/129 (84.50%), Postives = 119/129 (92.25%), Query Frame = 0

Query: 5   KEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINTEIAN 64
           KEKG CFRCD+KFS EHRCKR ELNII VQE EDLSEETDQVGEEIET GN+E+N EIAN
Sbjct: 9   KEKGLCFRCDEKFSSEHRCKRCELNIIAVQEREDLSEETDQVGEEIETKGNEEVNIEIAN 68

Query: 65  LSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDAYGVV 124
           LSLNSLVGL+S KTIKIKGEIRGRE+VVLIDGGATHNFI +EVVKELKIS+ET+DAYG+V
Sbjct: 69  LSLNSLVGLSSPKTIKIKGEIRGREIVVLIDGGATHNFILKEVVKELKISIETLDAYGIV 128

Query: 125 LGTGGVVRA 134
           LGT G+VRA
Sbjct: 129 LGTRGIVRA 137

BLAST of CsaV3_3G030570 vs. ExPASy TrEMBL
Match: A0A5D3DIK2 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00260 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 62/135 (45.93%), Postives = 96/135 (71.11%), Query Frame = 0

Query: 4   KKEKGWCFRCDKKFSPEHRCK---RRELNIIVVQEGEDLSEETDQVGEEIETNGNDEIN- 63
           +KEKG CFRC++K+S +H+C+   +REL + VV EG +  E  ++  EE E  G  E+N 
Sbjct: 197 RKEKGLCFRCNEKYSADHKCRLKEQRELRMFVVTEGREEYEIVEEEKEEKEL-GCIEVNE 256

Query: 64  --TEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVET 123
             T +  LS+NS+VGLN   T+K++G++ G EVV+LID GATHNF++E++VK+L +S++ 
Sbjct: 257 NVTTVVELSINSVVGLNDPGTMKVRGKLLGEEVVILIDSGATHNFVSEKLVKKLSLSIKE 316

Query: 124 MDAYGVVLGTGGVVR 133
              YGV+LG+G  ++
Sbjct: 317 TSHYGVILGSGAAIQ 330

BLAST of CsaV3_3G030570 vs. ExPASy TrEMBL
Match: A0A5A7TC65 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00430 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 62/135 (45.93%), Postives = 96/135 (71.11%), Query Frame = 0

Query: 4   KKEKGWCFRCDKKFSPEHRCK---RRELNIIVVQEGEDLSEETDQVGEEIETNGNDEIN- 63
           +KEKG CFRC++K+S +H+C+   +REL + VV EG +  E  ++  EE E  G  E+N 
Sbjct: 197 RKEKGLCFRCNEKYSADHKCRLKEQRELRMFVVTEGREEYEIVEEEKEEKEL-GCIEVNE 256

Query: 64  --TEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVET 123
             T +  LS+NS+VGLN   T+K++G++ G EVV+LID GATHNF++E++VK+L +S++ 
Sbjct: 257 NVTTVVELSINSVVGLNDPGTMKVRGKLLGEEVVILIDSGATHNFVSEKLVKKLSLSIKE 316

Query: 124 MDAYGVVLGTGGVVR 133
              YGV+LG+G  ++
Sbjct: 317 TSHYGVILGSGAAIQ 330

BLAST of CsaV3_3G030570 vs. ExPASy TrEMBL
Match: A0A5A7V3E4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00870 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 64/135 (47.41%), Postives = 96/135 (71.11%), Query Frame = 0

Query: 4   KKEKGWCFRCDKKFSPEHRCK---RRELNIIVVQEGEDLSEETDQVGEEIETNGNDEIN- 63
           +KEKG CFRC++K+S +HRC+   +REL + VV EG+D  E  ++  EE +  G  E+N 
Sbjct: 325 RKEKGLCFRCNEKYSADHRCRLKEQRELRMFVVTEGKDEYEIVEEEKEEKDL-GRLEVNE 384

Query: 64  --TEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVET 123
             T +  LS+NS+VGLN   T+K++G++ G EV+VLID GATHNF++E++VK+L + V+ 
Sbjct: 385 DLTTVVELSINSVVGLNDPGTMKVRGKLLGEEVIVLIDCGATHNFVSEKLVKKLILPVKE 444

Query: 124 MDAYGVVLGTGGVVR 133
              YGV+LG+G  V+
Sbjct: 445 TSHYGVILGSGAAVQ 458

BLAST of CsaV3_3G030570 vs. ExPASy TrEMBL
Match: A0A5A7U9J7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G002020 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 62/135 (45.93%), Postives = 97/135 (71.85%), Query Frame = 0

Query: 4   KKEKGWCFRCDKKFSPEHRCK---RRELNIIVVQEGEDLSEETDQVGEEIETNGNDEIN- 63
           +KEKG CFRC++K+S +H+C+   +REL + VV EG++  E  ++  EE E  G  E+N 
Sbjct: 322 RKEKGLCFRCNEKYSADHKCRLKEQRELRMFVVTEGKEEYEIVEEEKEEKEL-GRIEVNE 381

Query: 64  --TEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVET 123
             T +  LS+NS+VGLN  +T+K++G++ G EV+VLID GATHNF++E++VK+L + ++ 
Sbjct: 382 DLTTVVELSINSVVGLNDPETMKVRGKLLGEEVIVLIDCGATHNFVSEKLVKKLILPIKE 441

Query: 124 MDAYGVVLGTGGVVR 133
              YGV+LG+G  V+
Sbjct: 442 TSHYGVILGSGAAVQ 455

BLAST of CsaV3_3G030570 vs. TAIR 10
Match: AT3G30770.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.5e-04
Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 0

Query: 62  IANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDAY 121
           I  +   S       K ++  G I   +VVV+ID GAT+NFI++E+   LK+   T +  
Sbjct: 267 IRQVKRQSTTEFTKGKDMRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQA 326

Query: 122 GVVLG 127
            V+LG
Sbjct: 327 SVLLG 331

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650876.11.1e-65100.00hypothetical protein Csa_002497, partial [Cucumis sativus][more]
XP_031737572.11.1e-65100.00uncharacterized protein LOC116402461 [Cucumis sativus][more]
KAA0039528.17.2e-5284.50ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gyp... [more]
KAE8647113.17.2e-3685.42hypothetical protein Csa_021721 [Cucumis sativus][more]
XP_024030016.18.8e-2650.78uncharacterized protein LOC112094120 [Morus notabilis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CTU63.5e-5284.50Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DIK21.2e-2345.93Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7TC651.2e-2345.93Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7V3E42.0e-2347.41Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7U9J72.6e-2345.93Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
AT3G30770.14.5e-0435.38Eukaryotic aspartyl protease family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF08284RVP_2coord: 85..120
e-value: 3.5E-5
score: 23.6
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 1..120
NoneNo IPR availablePANTHERPTHR34482:SF20SUBFAMILY NOT NAMEDcoord: 1..120
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 81..119
e-value: 2.4189E-9
score: 49.2572
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 53..133
e-value: 3.4E-8
score: 35.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G030570.1CsaV3_3G030570.1mRNA