Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAATAAAGAAGGAAAAAGGTTGGTGTTTTAGATGTGACAAGAAGTTCAGTCCAGAGCACCGCTGTAAAAGACGTGAATTAAACATCATTGTTGTTCAAGAAGGGGAAGACTTAAGTGAAGAAACCGATCAAGTGGGGGAAGAAATCGAAACCAACGGGAATGACGAAATCAATACAGAAATAGCGAATTTGTCGCTAAATTCATTGGTAGGTCTCAATTCATCGAAAACCATAAAAATTAAAGGAGAAATAAGGGGACGTGAGGTTGTGGTGCTGATCGATGGGGGAGCCACGCACAATTTTATTGCAGAAGAGGTAGTCAAAGAGCTAAAAATTTCAGTAGAAACCATGGATGCATATGGGGTTGTTCTAGGAACCGGAGGTGTAGTCCGAGCAACCG
mRNA sequence
ATGCGAATAAAGAAGGAAAAAGGTTGGTGTTTTAGATGTGACAAGAAGTTCAGTCCAGAGCACCGCTGTAAAAGACGTGAATTAAACATCATTGTTGTTCAAGAAGGGGAAGACTTAAGTGAAGAAACCGATCAAGTGGGGGAAGAAATCGAAACCAACGGGAATGACGAAATCAATACAGAAATAGCGAATTTGTCGCTAAATTCATTGGTAGGTCTCAATTCATCGAAAACCATAAAAATTAAAGGAGAAATAAGGGGACGTGAGGTTGTGGTGCTGATCGATGGGGGAGCCACGCACAATTTTATTGCAGAAGAGGTAGTCAAAGAGCTAAAAATTTCAGTAGAAACCATGGATGCATATGGGGTTGTTCTAGGAACCGGAGGTGTAGTCCGAGCAACCG
Coding sequence (CDS)
ATGCGAATAAAGAAGGAAAAAGGTTGGTGTTTTAGATGTGACAAGAAGTTCAGTCCAGAGCACCGCTGTAAAAGACGTGAATTAAACATCATTGTTGTTCAAGAAGGGGAAGACTTAAGTGAAGAAACCGATCAAGTGGGGGAAGAAATCGAAACCAACGGGAATGACGAAATCAATACAGAAATAGCGAATTTGTCGCTAAATTCATTGGTAGGTCTCAATTCATCGAAAACCATAAAAATTAAAGGAGAAATAAGGGGACGTGAGGTTGTGGTGCTGATCGATGGGGGAGCCACGCACAATTTTATTGCAGAAGAGGTAGTCAAAGAGCTAAAAATTTCAGTAGAAACCATGGATGCATATGGGGTTGTTCTAGGAACCGGAGGTGTAGTCCGAGCAACCG
Protein sequence
MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINTEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDAYGVVLGTGGVVRATX
Homology
BLAST of CsaV3_3G030570 vs. NCBI nr
Match:
KAE8650876.1 (hypothetical protein Csa_002497, partial [Cucumis sativus])
HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 60
MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT
Sbjct: 1 MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 60
Query: 61 EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA 120
EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA
Sbjct: 61 EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA 120
Query: 121 YGVVLGTGGVVRAT 135
YGVVLGTGGVVRAT
Sbjct: 121 YGVVLGTGGVVRAT 134
BLAST of CsaV3_3G030570 vs. NCBI nr
Match:
XP_031737572.1 (uncharacterized protein LOC116402461 [Cucumis sativus])
HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 60
MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT
Sbjct: 25 MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 84
Query: 61 EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA 120
EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA
Sbjct: 85 EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA 144
Query: 121 YGVVLGTGGVVRAT 135
YGVVLGTGGVVRAT
Sbjct: 145 YGVVLGTGGVVRAT 158
BLAST of CsaV3_3G030570 vs. NCBI nr
Match:
KAA0039528.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 214.2 bits (544), Expect = 7.2e-52
Identity = 109/129 (84.50%), Postives = 119/129 (92.25%), Query Frame = 0
Query: 5 KEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINTEIAN 64
KEKG CFRCD+KFS EHRCKR ELNII VQE EDLSEETDQVGEEIET GN+E+N EIAN
Sbjct: 9 KEKGLCFRCDEKFSSEHRCKRCELNIIAVQEREDLSEETDQVGEEIETKGNEEVNIEIAN 68
Query: 65 LSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDAYGVV 124
LSLNSLVGL+S KTIKIKGEIRGRE+VVLIDGGATHNFI +EVVKELKIS+ET+DAYG+V
Sbjct: 69 LSLNSLVGLSSPKTIKIKGEIRGREIVVLIDGGATHNFILKEVVKELKISIETLDAYGIV 128
Query: 125 LGTGGVVRA 134
LGT G+VRA
Sbjct: 129 LGTRGIVRA 137
BLAST of CsaV3_3G030570 vs. NCBI nr
Match:
KAE8647113.1 (hypothetical protein Csa_021721 [Cucumis sativus])
HSP 1 Score: 161.0 bits (406), Expect = 7.2e-36
Identity = 82/96 (85.42%), Postives = 89/96 (92.71%), Query Frame = 0
Query: 1 MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 60
+RIKKEKG CFRCD+KFS HRCKRRELNIIVVQEGEDLS++TDQVGEEIETNGN E+NT
Sbjct: 66 VRIKKEKGLCFRCDEKFSLGHRCKRRELNIIVVQEGEDLSDKTDQVGEEIETNGNKEVNT 125
Query: 61 EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDG 97
+I NLS+NSLVG NS KTIKIKGEIRGREVVVLIDG
Sbjct: 126 KIVNLSINSLVGFNSPKTIKIKGEIRGREVVVLIDG 161
BLAST of CsaV3_3G030570 vs. NCBI nr
Match:
XP_024030016.1 (uncharacterized protein LOC112094120 [Morus notabilis])
HSP 1 Score: 127.5 bits (319), Expect = 8.8e-26
Identity = 65/128 (50.78%), Postives = 96/128 (75.00%), Query Frame = 0
Query: 1 MRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINT 60
+R KKEKG C+RCD K+S HRC REL +++V E E+++EE ++ E G+DE
Sbjct: 86 IRTKKEKGLCYRCDGKYSFRHRCPNRELQVLLVLEKEEVAEEQEEGAEP----GDDE--- 145
Query: 61 EIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDA 120
E+ LSLNS+VGL S KT+K+KG +RG+EV VLID GAT+NFI+ ++V++++++V+ +
Sbjct: 146 EVVELSLNSVVGLTSPKTMKLKGVLRGKEVTVLIDSGATYNFISVDLVRKMELTVDKIGD 205
Query: 121 YGVVLGTG 129
YGVV+GTG
Sbjct: 206 YGVVMGTG 206
BLAST of CsaV3_3G030570 vs. ExPASy TrEMBL
Match:
A0A5D3CTU6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00600 PE=4 SV=1)
HSP 1 Score: 214.2 bits (544), Expect = 3.5e-52
Identity = 109/129 (84.50%), Postives = 119/129 (92.25%), Query Frame = 0
Query: 5 KEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINTEIAN 64
KEKG CFRCD+KFS EHRCKR ELNII VQE EDLSEETDQVGEEIET GN+E+N EIAN
Sbjct: 9 KEKGLCFRCDEKFSSEHRCKRCELNIIAVQEREDLSEETDQVGEEIETKGNEEVNIEIAN 68
Query: 65 LSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDAYGVV 124
LSLNSLVGL+S KTIKIKGEIRGRE+VVLIDGGATHNFI +EVVKELKIS+ET+DAYG+V
Sbjct: 69 LSLNSLVGLSSPKTIKIKGEIRGREIVVLIDGGATHNFILKEVVKELKISIETLDAYGIV 128
Query: 125 LGTGGVVRA 134
LGT G+VRA
Sbjct: 129 LGTRGIVRA 137
BLAST of CsaV3_3G030570 vs. ExPASy TrEMBL
Match:
A0A5D3DIK2 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00260 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 62/135 (45.93%), Postives = 96/135 (71.11%), Query Frame = 0
Query: 4 KKEKGWCFRCDKKFSPEHRCK---RRELNIIVVQEGEDLSEETDQVGEEIETNGNDEIN- 63
+KEKG CFRC++K+S +H+C+ +REL + VV EG + E ++ EE E G E+N
Sbjct: 197 RKEKGLCFRCNEKYSADHKCRLKEQRELRMFVVTEGREEYEIVEEEKEEKEL-GCIEVNE 256
Query: 64 --TEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVET 123
T + LS+NS+VGLN T+K++G++ G EVV+LID GATHNF++E++VK+L +S++
Sbjct: 257 NVTTVVELSINSVVGLNDPGTMKVRGKLLGEEVVILIDSGATHNFVSEKLVKKLSLSIKE 316
Query: 124 MDAYGVVLGTGGVVR 133
YGV+LG+G ++
Sbjct: 317 TSHYGVILGSGAAIQ 330
BLAST of CsaV3_3G030570 vs. ExPASy TrEMBL
Match:
A0A5A7TC65 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00430 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 62/135 (45.93%), Postives = 96/135 (71.11%), Query Frame = 0
Query: 4 KKEKGWCFRCDKKFSPEHRCK---RRELNIIVVQEGEDLSEETDQVGEEIETNGNDEIN- 63
+KEKG CFRC++K+S +H+C+ +REL + VV EG + E ++ EE E G E+N
Sbjct: 197 RKEKGLCFRCNEKYSADHKCRLKEQRELRMFVVTEGREEYEIVEEEKEEKEL-GCIEVNE 256
Query: 64 --TEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVET 123
T + LS+NS+VGLN T+K++G++ G EVV+LID GATHNF++E++VK+L +S++
Sbjct: 257 NVTTVVELSINSVVGLNDPGTMKVRGKLLGEEVVILIDSGATHNFVSEKLVKKLSLSIKE 316
Query: 124 MDAYGVVLGTGGVVR 133
YGV+LG+G ++
Sbjct: 317 TSHYGVILGSGAAIQ 330
BLAST of CsaV3_3G030570 vs. ExPASy TrEMBL
Match:
A0A5A7V3E4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00870 PE=4 SV=1)
HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 64/135 (47.41%), Postives = 96/135 (71.11%), Query Frame = 0
Query: 4 KKEKGWCFRCDKKFSPEHRCK---RRELNIIVVQEGEDLSEETDQVGEEIETNGNDEIN- 63
+KEKG CFRC++K+S +HRC+ +REL + VV EG+D E ++ EE + G E+N
Sbjct: 325 RKEKGLCFRCNEKYSADHRCRLKEQRELRMFVVTEGKDEYEIVEEEKEEKDL-GRLEVNE 384
Query: 64 --TEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVET 123
T + LS+NS+VGLN T+K++G++ G EV+VLID GATHNF++E++VK+L + V+
Sbjct: 385 DLTTVVELSINSVVGLNDPGTMKVRGKLLGEEVIVLIDCGATHNFVSEKLVKKLILPVKE 444
Query: 124 MDAYGVVLGTGGVVR 133
YGV+LG+G V+
Sbjct: 445 TSHYGVILGSGAAVQ 458
BLAST of CsaV3_3G030570 vs. ExPASy TrEMBL
Match:
A0A5A7U9J7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G002020 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 62/135 (45.93%), Postives = 97/135 (71.85%), Query Frame = 0
Query: 4 KKEKGWCFRCDKKFSPEHRCK---RRELNIIVVQEGEDLSEETDQVGEEIETNGNDEIN- 63
+KEKG CFRC++K+S +H+C+ +REL + VV EG++ E ++ EE E G E+N
Sbjct: 322 RKEKGLCFRCNEKYSADHKCRLKEQRELRMFVVTEGKEEYEIVEEEKEEKEL-GRIEVNE 381
Query: 64 --TEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVET 123
T + LS+NS+VGLN +T+K++G++ G EV+VLID GATHNF++E++VK+L + ++
Sbjct: 382 DLTTVVELSINSVVGLNDPETMKVRGKLLGEEVIVLIDCGATHNFVSEKLVKKLILPIKE 441
Query: 124 MDAYGVVLGTGGVVR 133
YGV+LG+G V+
Sbjct: 442 TSHYGVILGSGAAVQ 455
BLAST of CsaV3_3G030570 vs. TAIR 10
Match:
AT3G30770.1 (Eukaryotic aspartyl protease family protein )
HSP 1 Score: 42.0 bits (97), Expect = 4.5e-04
Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 0
Query: 62 IANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDAY 121
I + S K ++ G I +VVV+ID GAT+NFI++E+ LK+ T +
Sbjct: 267 IRQVKRQSTTEFTKGKDMRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQA 326
Query: 122 GVVLG 127
V+LG
Sbjct: 327 SVLLG 331
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8650876.1 | 1.1e-65 | 100.00 | hypothetical protein Csa_002497, partial [Cucumis sativus] | [more] |
XP_031737572.1 | 1.1e-65 | 100.00 | uncharacterized protein LOC116402461 [Cucumis sativus] | [more] |
KAA0039528.1 | 7.2e-52 | 84.50 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gyp... | [more] |
KAE8647113.1 | 7.2e-36 | 85.42 | hypothetical protein Csa_021721 [Cucumis sativus] | [more] |
XP_024030016.1 | 8.8e-26 | 50.78 | uncharacterized protein LOC112094120 [Morus notabilis] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CTU6 | 3.5e-52 | 84.50 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3DIK2 | 1.2e-23 | 45.93 | Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
A0A5A7TC65 | 1.2e-23 | 45.93 | Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
A0A5A7V3E4 | 2.0e-23 | 47.41 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7U9J7 | 2.6e-23 | 45.93 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |
AT3G30770.1 | 4.5e-04 | 35.38 | Eukaryotic aspartyl protease family protein | [more] |