CsaV3_3G020980 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G020980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 17407629 .. 17407868 (+)
RNA-Seq Expression	CsaV3_3G020980
Synteny	CsaV3_3G020980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATTGAAGAAACACAGAGAATCAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAATGGTGAAACGGAGCTTAGAGACAAAGAGACAGACAGTGATTTGGGTTCACCACTTTAGTGGAAACTTTGGATTTGTGTTTTACTTTTCTTCTTTGCTTTGCTTTGTTGTTTTGGTTTTTTGTTTACAGAGAGAGCAGTCTTCTTCTCTTCTCTCTTTCTTCATGGCATCTCTCCATTTTAA

mRNA sequence

ATGGGTATTGAAGAAACACAGAGAATCAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAATGGTGAAACGGAGCTTAGAGACAAAGAGACAGACAGTGATTTGGAGAGAGCAGTCTTCTTCTCTTCTCTCTTTCTTCATGGCATCTCTCCATTTTAA

Coding sequence (CDS)

ATGGGTATTGAAGAAACACAGAGAATCAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAATGGTGAAACGGAGCTTAGAGACAAAGAGACAGACAGTGATTTGGAGAGAGCAGTCTTCTTCTCTTCTCTCTTTCTTCATGGCATCTCTCCATTTTAA

Protein sequence

MGIEETQRIRGRKEGRKEGNGETELRDKETDSDLERAVFFSSLFLHGISPF*

Homology

[Close]

BLAST of CsaV3_3G020980 vs. NCBI nr
Match: KGN57788.1 (hypothetical protein Csa_011758 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 2.0e-18
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MGIEETQRIRGRKEGRKEGNGETELRDKETDSDLERAVFFSSLFLHGISPF 52
          MGIEETQRIRGRKEGRKEGNGETELRDKETDSDLERAVFFSSLFLHGISPF
Sbjct: 1  MGIEETQRIRGRKEGRKEGNGETELRDKETDSDLERAVFFSSLFLHGISPF 51

[Close]

BLAST of CsaV3_3G020980 vs. ExPASy TrEMBL
Match: A0A0A0L7K4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G302130 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.6e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MGIEETQRIRGRKEGRKEGNGETELRDKETDSDLERAVFFSSLFLHGISPF 52
          MGIEETQRIRGRKEGRKEGNGETELRDKETDSDLERAVFFSSLFLHGISPF
Sbjct: 1  MGIEETQRIRGRKEGRKEGNGETELRDKETDSDLERAVFFSSLFLHGISPF 51

The following BLAST results are available for this feature:

BLAST of CsaV3_3G020980 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57788.1	2.0e-18	100.00	hypothetical protein Csa_011758 [Cucumis sativus]	[more]

BLAST of CsaV3_3G020980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G020980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7K4	9.6e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G302130 PE=4 SV=1	[more]

BLAST of CsaV3_3G020980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G020980.1	CsaV3_3G020980.1	mRNA