CsaV3_3G020270 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G020270
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	MADS-box domain-containing protein
Location	chr3: 16256046 .. 16256915 (-)
RNA-Seq Expression	CsaV3_3G020270
Synteny	CsaV3_3G020270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGAGTGTTTCGGCAGCATTTTAAAGCTCATAAGGAGTTGACTGGGAATTTTGAAAAATAAAAGGAAGATCGGGGCATGAACAACGGTAAAGTTCCAAAACCATAAAGAAGTCAGATCACTCCTGTTTTCTCTGTTCTTCTCATTCCCTCTACAATTGCTCAAAACTTGCTAAGCCATTGGAGTTTCCTTCGTTTTGCATTGTTGAGAAGAGCGATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACGTTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

mRNA sequence

ATGATCACTCCTGTTTTCTCTGTTCTTCTCATTCCCTCTACAATTGCTCAAAACTTGCTAAGCCATTGGAGTTTCCTTCGTTTTGCATTGTTGAGAAGAGCGATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACGTTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

Coding sequence (CDS)

ATGATCACTCCTGTTTTCTCTGTTCTTCTCATTCCCTCTACAATTGCTCAAAACTTGCTAAGCCATTGGAGTTTCCTTCGTTTTGCATTGTTGAGAAGAGCGATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACGTTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

Protein sequence

MITPVFSVLLIPSTIAQNLLSHWSFLRFALLRRAMGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY*

Homology

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BLAST of CsaV3_3G020270 vs. NCBI nr
Match: KAE8650565.1 (hypothetical protein Csa_011366 [Cucumis sativus])

HSP 1 Score: 496.1 bits (1276), Expect = 1.8e-136
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MITPVFSVLLIPSTIAQNLLSHWSFLRFALLRRAMGRGILSLKLIPNPKSRRTTFLKRKK 60
           MITPVFSVLLIPSTIAQNLLSHWSFLRFALLRRAMGRGILSLKLIPNPKSRRTTFLKRKK
Sbjct: 1   MITPVFSVLLIPSTIAQNLLSHWSFLRFALLRRAMGRGILSLKLIPNPKSRRTTFLKRKK 60

Query: 61  SLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKSHSFTKPNSSY 120
           SLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKSHSFTKPNSSY
Sbjct: 61  SLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKSHSFTKPNSSY 120

Query: 121 DLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDH 180
           DLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDH
Sbjct: 121 DLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDH 180

Query: 181 LIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNP 240
           LIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNP
Sbjct: 181 LIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNP 240

Query: 241 IPDFDFDFDY 251
           IPDFDFDFDY
Sbjct: 241 IPDFDFDFDY 250

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BLAST of CsaV3_3G020270 vs. NCBI nr
Match: XP_004145650.1 (agamous-like MADS-box protein AGL82 [Cucumis sativus])

HSP 1 Score: 434.9 bits (1117), Expect = 4.8e-118
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 95  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 154
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 155 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 214
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE
Sbjct: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180

Query: 215 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 251
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 216

[Close]

BLAST of CsaV3_3G020270 vs. NCBI nr
Match: XP_038877825.1 (agamous-like MADS-box protein MADS1 [Benincasa hispida])

HSP 1 Score: 295.8 bits (756), Expect = 3.5e-76
Identity = 166/234 (70.94%), Postives = 183/234 (78.21%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG LSLKLIPN KSRRTTF+KRKKSL+KKAYELSTLCDVQTC+FIASDCDPSTHFETW
Sbjct: 1   MGRGTLSLKLIPNLKSRRTTFVKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60

Query: 95  PPNHHQIHQMIRSYKSHSFTK---PNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQ--- 154
           PPNH QI+ MIRSYKS SF K    NSSY+L +FFSDRKNKILT+TSKL HNV DH    
Sbjct: 61  PPNHDQINAMIRSYKSRSFPKHSSRNSSYNLKQFFSDRKNKILTDTSKLRHNVEDHHLDS 120

Query: 155 -SEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSD 214
            SEHQL ELL  LDSKI VA+ MI+FM+ADYDHLI+QA GMDT PS+TE E TT+ ++S+
Sbjct: 121 LSEHQLKELLATLDSKIGVADGMIQFMDADYDHLIEQAFGMDTLPSETE-EPTTECDISE 180

Query: 215 LFNEPDEFE--------------EYNVEGFQSLLEDKFLETLVQNNPIPDFDFD 248
              EPDEFE              EYNVEGFQSLLED+FL TLV NNP   F FD
Sbjct: 181 FLIEPDEFEYNVEGFQSPLEDEFEYNVEGFQSLLEDEFLGTLVLNNP---FKFD 230

[Close]

BLAST of CsaV3_3G020270 vs. NCBI nr
Match: XP_038887166.1 (MADS-box protein SVP-like [Benincasa hispida])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-56
Identity = 132/203 (65.02%), Postives = 155/203 (76.35%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG L+LKLIPN KSRRTTF+KRKKSL+KKAYELSTLCDVQTC+FIASDCDPSTHFETW
Sbjct: 1   MGRGTLNLKLIPNLKSRRTTFVKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60

Query: 95  PPNHHQIHQMIRSYKSHSFTK-PNSSYDLNRFFSDRKNKILTNTSKLLHNV-------VD 154
           PPNH QIH MIRSYKSHSF K   +SY+L++FFS R NKI T TSKL HNV       +D
Sbjct: 61  PPNHDQIHSMIRSYKSHSFPKLSRNSYNLHQFFSHRMNKIATETSKLRHNVDKFKDRHLD 120

Query: 155 HQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIG---MDTP---PSQTEDEET 214
             SEHQL ELL +LDSKI V + MI+FMEADYDHLI++  G   +DTP   PS+T  +ET
Sbjct: 121 SLSEHQLEELLASLDSKIGVVDGMIQFMEADYDHLIEEVSGFSSIDTPSFLPSET--KET 180

Query: 215 TQFNVSDLFNEPDEFEEYNVEGF 224
            + ++++     +   EYNVE F
Sbjct: 181 PELDITEWLIGTNGL-EYNVEEF 200

[Close]

BLAST of CsaV3_3G020270 vs. NCBI nr
Match: XP_023526169.1 (agamous-like MADS-box protein AGL6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.2 bits (487), Expect = 5.4e-45
Identity = 115/191 (60.21%), Postives = 134/191 (70.16%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG LSLKLI NPKSRRTTF KRKKSL+KKAYELSTLCDVQTC+ IASD      F+TW
Sbjct: 1   MGRGTLSLKLISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASD-----EFQTW 60

Query: 95  PPNHHQIHQMIRSYKSHSFTK--PNSSYDLNRFFSDRKNKILTNTSKLLHNV-------- 154
           P + +Q+  MIRSYKS SF K    SSYDLN+FFSDRKNKI+T TSKL   V        
Sbjct: 61  PSDRNQVEAMIRSYKSQSFCKHSAKSSYDLNQFFSDRKNKIVTETSKLRDKVQKSKDTNS 120

Query: 155 ---VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQT----ED 209
              +D  SEHQL  LL  LDSKI VA+ MIEFMEADYD+LI+ A+ + +   QT    E 
Sbjct: 121 DHCLDSLSEHQLKVLLATLDSKIGVADSMIEFMEADYDYLIEGAVEISSIDKQTLSPLET 180

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BLAST of CsaV3_3G020270 vs. ExPASy Swiss-Prot
Match: Q9FIM0 (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 0


Query: 39  ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 98
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 99  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 158
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 159 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP-PSQTEDEETTQFN 218
           D  S  QL  +  A+DSK+   N+ +   E     +  QA  MDTP P    D+   QF 
Sbjct: 125 DKCSREQLHGIFCAVDSKL---NEAVTRQERSMFRVNHQA--MDTPFPQNLMDQ---QF- 184

[Close]

BLAST of CsaV3_3G020270 vs. ExPASy Swiss-Prot
Match: P29383 (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-07
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 95  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 154
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 155 LMELLDALD 162
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]

BLAST of CsaV3_3G020270 vs. ExPASy Swiss-Prot
Match: Q38694 (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah OX=29714 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-07
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 35 MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD 85
          MGRG + LK+I N  +R+ TF KR+K L+KKAYELS LCD +  L I S+
Sbjct: 1  MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSN 50

[Close]

BLAST of CsaV3_3G020270 vs. ExPASy Swiss-Prot
Match: A0A217EJJ0 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-06
Identity = 46/166 (27.71%), Postives = 81/166 (48.80%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG + +K I N  +R+ TF KR+  L+KKAYELS LCD +  L +      S+    +
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-----SSRGRVY 60

Query: 95  PPNHHQIHQMIRSYK--SHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 154
             +++ I   I  YK  S   T   S+ ++N  +  +++  L    ++L N   H     
Sbjct: 61  EYSNNNIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDS 120

Query: 155 LMEL----LDALDSKI-----RVANDMIEFMEADYDHLIDQAIGMD 190
           L  L    L  L++++     R+ +   E + A+ ++L  + I ++
Sbjct: 121 LASLTVKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELE 161

[Close]

BLAST of CsaV3_3G020270 vs. ExPASy Swiss-Prot
Match: Q40872 (Floral homeotic protein AGAMOUS OS=Panax ginseng OX=4054 GN=AG2 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 32  RRAMGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHF 91
           +R +GRG + +K I N  +R+ TF KR+  L+KKAYELS LCD +  L +      ST  
Sbjct: 14  QRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-----STRG 73

Query: 92  ETWPPNHHQIHQMIRSYKSHSFTKPNSS--YDLN-RFFSDRKNKILTNTSKLLHN 144
             +   ++ +   I  YK      PN+S   + N +F+    +K+    S +  N
Sbjct: 74  RLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKN 123

[Close]

BLAST of CsaV3_3G020270 vs. ExPASy TrEMBL
Match: A0A0A0LAL9 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G258140 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 2.3e-118
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 95  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 154
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 155 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 214
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE
Sbjct: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180

Query: 215 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 251
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 216

[Close]

BLAST of CsaV3_3G020270 vs. ExPASy TrEMBL
Match: A0A6J1F370 (agamous-like MADS-box protein AGL6 OS=Cucurbita moschata OX=3662 GN=LOC111441717 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-44
Identity = 118/210 (56.19%), Postives = 142/210 (67.62%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG LSLKLI NPKSRRTTF KRKKSL+KKAYELSTLCDVQTC+ IAS+      FETW
Sbjct: 1   MGRGTLSLKLISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASE-----EFETW 60

Query: 95  PPNHHQIHQMIRSYKSHSFTKPN--SSYDLNRFFSDRKNKILTNTSKLLHNV-------- 154
           P +  Q+  MIRSYKS SF K +  SSYDLN+FFSDRKNKI+T TSKL   V        
Sbjct: 61  PSDRTQVEAMIRSYKSQSFCKQSAKSSYDLNQFFSDRKNKIVTETSKLREKVQKSKDTNS 120

Query: 155 ---VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQ----TED 214
              +D  SEHQL  L+  LDSKI VA+ MIEFMEADYD+LI+ A+ + +   Q     E 
Sbjct: 121 DHCLDSLSEHQLKALMATLDSKIGVADSMIEFMEADYDYLIEGAVEISSIDKQIFSPLET 180

Query: 215 EETTQFNVSDLFNEPDEFEEYNVEGFQSLL 228
           E + + N+S+L  E +   +Y +EG   +L
Sbjct: 181 EASPELNISELGMEAN--YDYLIEGDTEIL 203

[Close]

BLAST of CsaV3_3G020270 vs. ExPASy TrEMBL
Match: A0A5D3DXK1 (Agamous-like MADS-box protein AGL3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00710 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.0e-37
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 104 MIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLMELLDALDSK 163
           MIRSYKSHSFTKPNSSYDLNRFFSDRKNKILT+TSKLLHNV DHQS++QL+ELL ALDSK
Sbjct: 1   MIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTHTSKLLHNVRDHQSKYQLVELLAALDSK 60

Query: 164 IRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEET 201
           I V N+MIEFMEADYD LIDQA+GMDT PSQTEDEET
Sbjct: 61  ISVGNNMIEFMEADYDDLIDQAVGMDTSPSQTEDEET 97

[Close]

BLAST of CsaV3_3G020270 vs. ExPASy TrEMBL
Match: A0A5A7U2J6 (Agamous-like MADS-box protein AGL3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00930 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 64/99 (64.65%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 170 MIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQ--------------------FNVSDLF 229
           MIEFMEADYD LIDQA+GMDTPP QTEDEETTQ                    FN+SD  
Sbjct: 1   MIEFMEADYDDLIDQAVGMDTPPFQTEDEETTQFKIFNFLNEPDEFEDEETIEFNISDFL 60

Query: 230 NEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDF 249
           N+P+EFEEY+VEGFQSLL+D+FLETLVQNNPI + DFD+
Sbjct: 61  NDPNEFEEYDVEGFQSLLQDEFLETLVQNNPILNIDFDY 99

[Close]

BLAST of CsaV3_3G020270 vs. ExPASy TrEMBL
Match: A0A6J1J5U6 (agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.2e-23
Identity = 92/230 (40.00%), Postives = 121/230 (52.61%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI-----ASDCDP-- 94
           M RG LS  LI N KSR +TF +RK SL+KKAYELSTLCDV+TC+ I     A D DP  
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSL 60

Query: 95  -STHFETWPPNHHQIHQMIRSYKSHSFT-KPNSSYDLNRFFSDRKNKILTNTSKLLHNV- 154
            S  F TWP N  ++  MI +YK+ +   +    +DL+ +FSDRK K++T   K    V 
Sbjct: 61  SSVEFHTWPSNRSEVEHMIHAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVG 120

Query: 155 ----------VDHQSEHQLMELLDALDSKIRVANDMIEFMEAD------------YDHLI 214
                     +D  SE QL E ++ LDS+I  A  MI+FM+AD            Y++++
Sbjct: 121 KIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRMIDFMDADNENLFGMFSCEEYENVV 180

Query: 215 DQAIGMDTPP-SQTEDEETTQFNVSDLFNEPDEFE-EYNVEGFQSLLEDK 231
                  TP  S  E E T   N  +    PDE E   N E  + LLED+
Sbjct: 181 QMGGDSSTPVLSLVELESTDSLNSPN--PNPDEDEIGCNFENLEYLLEDE 228

[Close]

BLAST of CsaV3_3G020270 vs. TAIR 10
Match: AT5G58890.1 (AGAMOUS-like 82 )

HSP 1 Score: 62.0 bits (149), Expect = 7.9e-10
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 0


Query: 39  ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 98
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 99  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 158
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 159 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP-PSQTEDEETTQFN 218
           D  S  QL  +  A+DSK+   N+ +   E     +  QA  MDTP P    D+   QF 
Sbjct: 125 DKCSREQLHGIFCAVDSKL---NEAVTRQERSMFRVNHQA--MDTPFPQNLMDQ---QF- 184

[Close]

BLAST of CsaV3_3G020270 vs. TAIR 10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 95  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 154
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 155 LMELLDALD 162
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]

BLAST of CsaV3_3G020270 vs. TAIR 10
Match: AT2G03710.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 95  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 154
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 155 LMELLDALD 162
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]

BLAST of CsaV3_3G020270 vs. TAIR 10
Match: AT2G03710.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 95  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 154
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 155 LMELLDALD 162
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]

BLAST of CsaV3_3G020270 vs. TAIR 10
Match: AT4G09960.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-07
Identity = 37/115 (32.17%), Postives = 57/115 (49.57%), Query Frame = 0


Query: 31  LRRAMGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTH 90
           LR  MGRG + +K I N  +R+ TF KR+  L+KKAYELS LCD +  L +      ST 
Sbjct: 23  LRIRMGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-----STR 82

Query: 91  FETWPPNHHQIHQMIRSYKSHSFTKPNSS--YDLNRFFSDRKNKILTNTSKLLHN 144
              +   ++ I   I  YK       N+S   ++N  +  +++  L    + + N
Sbjct: 83  GRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQN 132

The following BLAST results are available for this feature:

BLAST of CsaV3_3G020270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650565.1	1.8e-136	100.00	hypothetical protein Csa_011366 [Cucumis sativus]	[more]
XP_004145650.1	4.8e-118	100.00	agamous-like MADS-box protein AGL82 [Cucumis sativus]	[more]
XP_038877825.1	3.5e-76	70.94	agamous-like MADS-box protein MADS1 [Benincasa hispida]	[more]
XP_038887166.1	1.1e-56	65.02	MADS-box protein SVP-like [Benincasa hispida]	[more]
XP_023526169.1	5.4e-45	60.21	agamous-like MADS-box protein AGL6 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_3G020270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIM0	1.1e-08	30.93	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=...	[more]
P29383	1.6e-07	34.11	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ...	[more]
Q38694	2.7e-07	56.00	Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah OX=29714 PE=2 SV=1	[more]
A0A217EJJ0	1.0e-06	27.71	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=...	[more]
Q40872	1.8e-06	32.17	Floral homeotic protein AGAMOUS OS=Panax ginseng OX=4054 GN=AG2 PE=2 SV=1	[more]

BLAST of CsaV3_3G020270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAL9	2.3e-118	100.00	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G258140 PE...	[more]
A0A6J1F370	1.0e-44	56.19	agamous-like MADS-box protein AGL6 OS=Cucurbita moschata OX=3662 GN=LOC111441717...	[more]
A0A5D3DXK1	2.0e-37	87.63	Agamous-like MADS-box protein AGL3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7U2J6	2.5e-24	64.65	Agamous-like MADS-box protein AGL3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1J5U6	8.2e-23	40.00	agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 ...	[more]

BLAST of CsaV3_3G020270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58890.1	7.9e-10	30.93	AGAMOUS-like 82	[more]
AT2G03710.1	1.1e-08	34.11	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.2	1.1e-08	34.11	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.3	1.1e-08	34.11	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.3	2.1e-07	32.17	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 157..177
None	No IPR available	PANTHER	PTHR11945:SF176	AGAMOUS-LIKE MADS-BOX PROTEIN AGL82	coord: 37..204
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 37..204
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 57..72 score: 64.75 coord: 72..93 score: 26.0 coord: 37..57 score: 40.64
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 35..96 e-value: 5.1E-16 score: 69.2
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 45..84 e-value: 1.6E-15 score: 56.3
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 35..95 score: 18.193771
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 48..134 e-value: 9.1E-17 score: 62.9
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 35..115
IPR033897	MADS SRF-like	CDD	cd00266	MADS_SRF_like	coord: 36..102 e-value: 2.89071E-21 score: 82.6931

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G020270.1	CsaV3_3G020270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
molecular_function	GO:0000987	cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity