CsaV3_3G009650 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G009650
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 7854459 .. 7854788 (+)
RNA-Seq Expression	CsaV3_3G009650
Synteny	CsaV3_3G009650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCATTAACAACACAACAACATACCTTTGTTGATGGAGTGCCCAAGTTTATCTTCACTGACCAAATCCAAGATCCCCACTCCCAGAAAGAAACGTCTCATCAGCTTCTCCTGCCAGTTACCCTTCAAAACCCGACGAAGCTGGCCGTCAGGCGAGTACAACTCCAGCTCACTTTCTGCACAGATTGCTTACACTACACAAAAACAAGGAATCCAACAAAGACAAAGGGCAAGAGAGAAACAGAAAGTAAATACAGAAGAGGCATCAATCCAACAAAACCAAACCAACATCATAATCACAAAAGAATCTATACACCAAAGTCATAA

mRNA sequence

ATGAAACCATTAACAACACAACAACATACCTTTGTTGATGGAGTGCCCAAGTTTATCTTCACTGACCAAATCCAAGATCCCCACTCCCAGAAAGAAACGTCTCATCAGCTTCTCCTGCCAGTTACCCTTCAAAACCCGACGAAGCTGGCCGTCAGGCGAGTACAACTCCAGCTCACTTTCTGCACAGATTGCTTACACTACACAAAAACAAGGAATCCAACAAAGACAAAGGGCAAGAGAGAAACAGAAAGTAAATACAGAAGAGGCATCAATCCAACAAAACCAAACCAACATCATAATCACAAAAGAATCTATACACCAAAGTCATAA

Coding sequence (CDS)

ATGAAACCATTAACAACACAACAACATACCTTTGTTGATGGAGTGCCCAAGTTTATCTTCACTGACCAAATCCAAGATCCCCACTCCCAGAAAGAAACGTCTCATCAGCTTCTCCTGCCAGTTACCCTTCAAAACCCGACGAAGCTGGCCGTCAGGCGAGTACAACTCCAGCTCACTTTCTGCACAGATTGCTTACACTACACAAAAACAAGGAATCCAACAAAGACAAAGGGCAAGAGAGAAACAGAAAGTAAATACAGAAGAGGCATCAATCCAACAAAACCAAACCAACATCATAATCACAAAAGAATCTATACACCAAAGTCATAA

Protein sequence

MKPLTTQQHTFVDGVPKFIFTDQIQDPHSQKETSHQLLLPVTLQNPTKLAVRRVQLQLTFCTDCLHYTKTRNPTKTKGKRETESKYRRGINPTKPNQHHNHKRIYTPKS*

Homology

[Close]

BLAST of CsaV3_3G009650 vs. NCBI nr
Match: KGN56594.1 (hypothetical protein Csa_010329 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 2.5e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MKPLTTQQHTFVDGVPKFIFTDQIQDPHSQKETSHQLLLPVTLQNPTKLAVRRVQLQLTF 60
           MKPLTTQQHTFVDGVPKFIFTDQIQDPHSQKETSHQLLLPVTLQNPTKLAVRRVQLQLTF
Sbjct: 1   MKPLTTQQHTFVDGVPKFIFTDQIQDPHSQKETSHQLLLPVTLQNPTKLAVRRVQLQLTF 60

Query: 61  CTDCLHYTKTRNPTKTKGKRETESKYRRGINPTKPNQHHNHKRIYTPKS 110
           CTDCLHYTKTRNPTKTKGKRETESKYRRGINPTKPNQHHNHKRIYTPKS
Sbjct: 61  CTDCLHYTKTRNPTKTKGKRETESKYRRGINPTKPNQHHNHKRIYTPKS 109

[Close]

BLAST of CsaV3_3G009650 vs. ExPASy TrEMBL
Match: A0A0A0L6E6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126095 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MKPLTTQQHTFVDGVPKFIFTDQIQDPHSQKETSHQLLLPVTLQNPTKLAVRRVQLQLTF 60
           MKPLTTQQHTFVDGVPKFIFTDQIQDPHSQKETSHQLLLPVTLQNPTKLAVRRVQLQLTF
Sbjct: 1   MKPLTTQQHTFVDGVPKFIFTDQIQDPHSQKETSHQLLLPVTLQNPTKLAVRRVQLQLTF 60

Query: 61  CTDCLHYTKTRNPTKTKGKRETESKYRRGINPTKPNQHHNHKRIYTPKS 110
           CTDCLHYTKTRNPTKTKGKRETESKYRRGINPTKPNQHHNHKRIYTPKS
Sbjct: 61  CTDCLHYTKTRNPTKTKGKRETESKYRRGINPTKPNQHHNHKRIYTPKS 109

The following BLAST results are available for this feature:

BLAST of CsaV3_3G009650 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56594.1	2.5e-55	100.00	hypothetical protein Csa_010329 [Cucumis sativus]	[more]

BLAST of CsaV3_3G009650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G009650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6E6	1.2e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126095 PE=4 SV=1	[more]

BLAST of CsaV3_3G009650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G009650.1	CsaV3_3G009650.1	mRNA