CsaV3_3G000760 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G000760
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptioncold shock domain-containing protein 3
Locationchr3: 619119 .. 622332 (-)
RNA-Seq ExpressionCsaV3_3G000760
SyntenyCsaV3_3G000760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAGAAATAGAAAAAAAAAGGGGAAATAAAGGGTAAGCGAATTAGGGTTTTTGGAAAGGGGTAGATCTCATTCTCTTTTGAGCTTCTATATATTGGGAAACCCTTTGGATATTTCGTTCCTCGGTCGCCATTTTTTGCTCACAAATTTTCTTCTCAAACTTACTTTGTGAAGATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATCTATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGGTGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGTGGCGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGGTGGTTGTTTTAATTGTGGGGAGTATGGGCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGTGGTGGTGGTGGCGGAAGATTTGGTGGCGGCGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCATCTTGATAAGGAGGGGGAAAGAGTAATAGTATATAATTTTTCCTTTAACCTCAATATTGTCCTTTAATTATGTTCTTCTTTTGGTGTGGATGGTGGCTATACGTAGCTTTACTTGAGAGGTTTCTATTAATTTTGATATTTTCCATGGTTGTTTAGCTCTTTAGGGGCAAATTTTTCTGGTTCACACATGATGTGGTAATTCGGTTAAATGAGGCATTTTTATCTTCTGTTCTTGTTTTGTTACCTTTTCATATTTCGAGTTAATGTTGTGCGATGTCTGATTCAATTGTAATTATCCATGTTAACATTTAATAACACATGGAATGCAGTAGCTAAGTTCGATTTGATGATATACGTTGTTTCTTGTTGGCAATTTCTTTGTTTTAGCAATACCATACTAGGCCATCATTTCGTTTACTTCATCATCAAGAAGGGATTTCTCTTAGAGAATTCATTTATTCTGATCCTCAAGTGTTATGAGGTATGCTTAGGTGCACACTGCTCTGTCTTTCTTAGTTCTTTGTGTTTAGGAGTTGATGCTTGTGTTTGGTATTTCTATGTTTTCAATCCTCTATATTTTTTTTAATTTATTCTTCTAAGTTTCACAGATATAACTCTTACTACTAATTTCAAACTTGCCCAAAAGATTTACCAAAAGAACAAGGGGTAGTTTATGTAGGGTTTTGACAAGACGAAGCAGAAGGCACACTTGAAGTGACTTGTGAATAATTGAATTAAAAGAAGACTAATGGATAATGCTTTTGTGATGCAAATAATTGAATGCTTGTTAGTGTCTAGTCACTGCCTTCTATATGTGAATGTGAATGTGAATGTGAAGTGTAGGTGAGGGATGGGTTCTCTTTATCCATCTCAGCCCTTTTTCTTGAGGACTTGGGGTGGGTTATATGTGTGTTTGTGTGGGGACATTGGTGTGGAATAGTCATCCCAACATTTATTTTAAGTTAAAAGTCTTATGAAGTAACTTCTTATTATATGTTTGATTAGTAGCTAGACTAATGTAAGTGTAGTAAATTCCCATCAATGTGTATTTGACAAGATCACTAATAAGTAAATAGTATTTTGATCTTGGGTCTTCAACTTTTCTCTACTCCTATCTATGAAATGGAAATTCTTAGAACATTAATTTCCCCTCCTTGCCCTTGCCCTGTATGAGATATAATGTTTTCTTCATGGTATATAGTATCATTTTGGGCTGGTGTGGGAATCAAATGATGTAGTTCTTCTCATACTCAAGAGTTATCTTTTGTGGGTTTTTGGATAAAGCTAATGAATAACTCAGAGGTTCAAGAAGGAGTTTATGAAGTCTAGTATTCTCCTCCAAAGTCCAAAATCATTTCTTTGAACACCTTTTAGAAAGGAATATAGTTTAAGTGATCTTTTAGTGTTGAATTCTTTTGTTTGACTGATTTTGATATGTTCTGCATTATGCTTATTCATGTGTTGACTATTATACTTAAGTTCAACTTTATTCTCGTATAGTTTAAAGGAAAGAAAGAAATTATTCCCATCTAGCTCTGTTCAATATAGTTTATCACATCCTAAGAGGTTTACTTAAACACTTGTCCTAAACATATCAATTGTATTTACTTTGGTTATTCTTCCTTAAGCTTTGTTCCTACCCATCTGTGAGAGGCTAATGAAGAATTTCTCATTGCCATTGTTTACTCTCTTTTCCTCGTTGCTCTATGAGTTTTGTAAGTTCATAACCTCAAAGGCTGGCTGTTATTGATTGCTTAGAGAACTTCCAAGCTTTTAACTTGAAGTTAGTTTGCAATATAATTCCTCTAATTGTTCCTTGTGGTGCTGCCATTTATTGACCTTTGCTTTCAACAAGTCTATGAAACGCCTATTAGATGCATGTTGACTCTAAATTTTGTAGTTTATGAATCTAATTTGTAATTAGAGTAGTAGTTGTTTCTTTTCGAAACATGTTACATATGGTTTCATGGAACATCAACCAAGTAAAGTTGAAATGAAATAAATAGATGATTGTAACATTGTATAAACGACAAATCTCCATATTTGAATTATTATAAGGAAAACAACAAAAGGGTGTCTCTTCCTTTGGATGAAGAGACATAGAGCCATAATGTGTTATGCTTTTTTGTTTTGTTGGTCAATTTTGTATACAAACACTTCTAAGGTCGTGACCTTCTTTTGTTAAAAGAATGCTGCTTTGGACCTTACCAAATTCTACAGTCCCG

mRNA sequence

ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATCTATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGGTGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGTGGCGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGGTGGTTGTTTTAATTGTGGGGAGTATGGGCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGTGGTGGTGGTGGCGGAAGATTTGGTGGCGGCGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCATCTTGA

Coding sequence (CDS)

ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATCTATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGGTGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGTGGCGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGGTGGTTGTTTTAATTGTGGGGAGTATGGGCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGTGGTGGTGGTGGCGGAAGATTTGGTGGCGGCGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCATCTTGA

Protein sequence

MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGGRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS*
Homology
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BLAST of CsaV3_3G000760 vs. NCBI nr
Match: XP_004146143.1 (cold shock domain-containing protein 3 [Cucumis sativus] >KGN55657.1 hypothetical protein Csa_011109 [Cucumis sativus])

HSP 1 Score: 518.5 bits (1334), Expect = 3.6e-143
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 

Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG
Sbjct: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG 240
           GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG 240

Query: 241 GRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS 274
           GRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS
Sbjct: 241 GRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS 273

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BLAST of CsaV3_3G000760 vs. NCBI nr
Match: XP_008448549.1 (PREDICTED: cold shock domain-containing protein 3 [Cucumis melo] >ADN33944.1 cold-shock DNA-binding family protein [Cucumis melo subsp. melo] >KAA0052958.1 cold shock domain-containing protein 3 [Cucumis melo var. makuwa] >TYK11414.1 cold shock domain-containing protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 479.9 bits (1234), Expect = 1.4e-131
Identity = 266/277 (96.03%), Postives = 266/277 (96.03%), Query Frame = 0 

Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120
           DGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
            GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGG
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGG 180

Query: 181 GGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSG 240
           GG GGGACYNCGGFGHLARDCNRGGAGGGS GGGGGGGCFNCGEYGHIARDCQNESRGS 
Sbjct: 181 GGSGGGACYNCGGFGHLARDCNRGGAGGGS-GGGGGGGCFNCGEYGHIARDCQNESRGS- 240

Query: 241 GGGGGRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS 274
           GGGGGRF  GGGGGGGSNTCFNCGKSGHFARECPDAS
Sbjct: 241 GGGGGRF--GGGGGGGSNTCFNCGKSGHFARECPDAS 272

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BLAST of CsaV3_3G000760 vs. NCBI nr
Match: XP_038876618.1 (cold shock domain-containing protein 3 [Benincasa hispida])

HSP 1 Score: 479.9 bits (1234), Expect = 1.4e-131
Identity = 262/273 (95.97%), Postives = 262/273 (95.97%), Query Frame = 0 

Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNF GGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           G CYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG
Sbjct: 121 GACYQCGEQGHLARDCTRASNRSGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG 240
            GACYNCGGFGHLARDCNRGGAGGGS   GGGGGCFNCGEYGHIARDCQNESRGS GGGG
Sbjct: 181 AGACYNCGGFGHLARDCNRGGAGGGS---GGGGGCFNCGEYGHIARDCQNESRGS-GGGG 240

Query: 241 GRFGGGG-GGGGGSNTCFNCGKSGHFARECPDA 273
           GRFGGGG GGGGG NTCFNCGKSGHFARECPDA
Sbjct: 241 GRFGGGGSGGGGGPNTCFNCGKSGHFARECPDA 268

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BLAST of CsaV3_3G000760 vs. NCBI nr
Match: XP_023540854.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >XP_023540855.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 460.7 bits (1184), Expect = 8.9e-126
Identity = 253/273 (92.67%), Postives = 256/273 (93.77%), Query Frame = 0 

Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGG    GGRGG GGGGYGFGGWRGGDRRNG+SGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGG----GGRGGRGGGGYGFGGWRGGDRRNGSSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           GGCYQCGEQGHLARDC RPSNRGGGGG GGGCFTCGEVGHLARDCPRGNSGGGGGG GGG
Sbjct: 121 GGCYQCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGS-GGGGGGGGCFNCGEYGHIARDCQNESRGSGGGG 240
           G  CYNCGGFGHLARDCNRGGAGGGS GGGGGGGGCFNCGEYGH+ARDCQNESR S  GG
Sbjct: 181 G--CYNCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGEYGHLARDCQNESRNS--GG 240

Query: 241 GGRFGGGGGGGGGSNTCFNCGKSGHFARECPDA 273
           GGRF  GGGGGGG+NTCFNCGKSGHFARECPDA
Sbjct: 241 GGRF--GGGGGGGANTCFNCGKSGHFARECPDA 263

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BLAST of CsaV3_3G000760 vs. NCBI nr
Match: KAG6577777.1 (Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015817.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 459.1 bits (1180), Expect = 2.6e-125
Identity = 252/271 (92.99%), Postives = 255/271 (94.10%), Query Frame = 0 

Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGGYGFGGWRGGDRRNG+SGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGR-GGGGGGYGFGGWRGGDRRNGSSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           GGCYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGEVGHLARDCPRGNS    GGGG G
Sbjct: 121 GGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNS----GGGGAG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG 240
           GGACYNCGGFGHLARDCNRGGAGGGS  GGGGGGCFNCGEYGH+ARDCQNESRGSGGGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGS--GGGGGGCFNCGEYGHLARDCQNESRGSGGGGG 240

Query: 241 GRFGGGGGGGGGSNTCFNCGKSGHFARECPD 272
           GRF     GGGG+NTCFNCGKSGHFARECPD
Sbjct: 241 GRF-----GGGGANTCFNCGKSGHFARECPD 257

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BLAST of CsaV3_3G000760 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.6e-53
Identity = 155/297 (52.19%), Postives = 179/297 (60.27%), Query Frame = 0 

Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGGRGGRGG----------GGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G GG     G          GG GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 NSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSG- 184
               G G CY CG+ GH ARDC +    N GGGGGGG  C++CGEVGHLA+DC  G+ G 
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 189

Query: 185 --GGGGGGGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQ 244
             GGGGG G GG  CY CGG GH ARDC +    GG   GGGG  C+ CG  GHIA+ C 
Sbjct: 190 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQ---NGGGNVGGGGSTCYTCGGVGHIAKVCT 249

Query: 245 NESRGSGGGGG-----------------GRFGGGGGGGGGSNTCFNCGKSGHFAREC 270
           ++    GGGGG                  R  G  GGGGGSN CF CGK GHFAREC
Sbjct: 250 SKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297

[Close]
BLAST of CsaV3_3G000760 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.3e-46
Identity = 147/289 (50.87%), Postives = 167/289 (57.79%), Query Frame = 0 

Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGGY-----GFGGWRGGDRRNGN 124
           KA+ V A  G S  + +N  G G  RGG G G    G  G+     G GG  GG  R   
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 125 SGAGGGGCYQCGEQGHLARDCTRPSN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGG 184
              GG GCY CG+ GH ARDCT   N   RG   GG  GC+TCG+VGH+ARDC + + G 
Sbjct: 130 ---GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGN 189

Query: 185 GGGGGG--GGGGACYNCGGFGHLARDC-NRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQ 244
           G   G   GG   CY CG  GH ARDC  +  AG    GGGG G C++CG  GHIARDC 
Sbjct: 190 GDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA 249

Query: 245 NESRGSGG----GGGGRFG-----GGGGGGGGSNTCFNCGKSGHFAREC 270
            + + S G    GG G         G GGGG  N C+ CGK GHFAREC
Sbjct: 250 TKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295

[Close]
BLAST of CsaV3_3G000760 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-37
Identity = 137/273 (50.18%), Postives = 154/273 (56.41%), Query Frame = 0 

Query: 1   MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA 60
           MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ 
Sbjct: 1   MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60

Query: 61  PGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRG-GGGGGGYGFGGWRGGDRRNGNS 120
            G DG++KA++V   DG++       GGGGGGRGG G GGG GGYG GG RGG R  G  
Sbjct: 61  SGGDGRTKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYG-GGGRGGSRGYG-- 120

Query: 121 GAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
             GG G Y                  GGGGG GGG                   GGGGGG
Sbjct: 121 --GGDGGY------------------GGGGGYGGG----------------SRYGGGGGG 180

Query: 181 GGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSG 240
            GGGGG                      G GG GGG GCF CGE GH ARDC   S+  G
Sbjct: 181 YGGGGGY---------------------GGGGSGGGSGCFKCGESGHFARDC---SQSGG 209

Query: 241 GGGGGRFGGGGGGGGGSNTCFNCGKSGHFAREC 270
           GGGGGRFGGGGGGGGG   C+ CG+ GHFAREC
Sbjct: 241 GGGGGRFGGGGGGGGGGG-CYKCGEDGHFAREC 209

[Close]
BLAST of CsaV3_3G000760 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-34
Identity = 115/232 (49.57%), Postives = 135/232 (58.19%), Query Frame = 0 

Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGS--SGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGGG 123
            KAI+V   DG+   GN   + GG  GGRGG GGG GGG G GG  G          GGG
Sbjct: 69  PKAIDVSGPDGAPVQGN---SGGGSSGGRGGFGGGRGGGRGSGGGYG----------GGG 128

Query: 124 GCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGG 183
           G Y                 RGGGG GG  C+ CGE GH+ARDC  G  G GGGGGG GG
Sbjct: 129 GGY---------------GGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGG 188

Query: 184 GACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESR 234
           G  Y  GG G+          GGG GGGGGGG C++CGE GH ARDC +  R
Sbjct: 189 GGGYGGGGGGY---------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]
BLAST of CsaV3_3G000760 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-31
Identity = 107/225 (47.56%), Postives = 125/225 (55.56%), Query Frame = 0 

Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGGGGC 123
            KAIEV   DG+        GG  GGRGG GGGGG        RGG R  G+ G G GG 
Sbjct: 73  PKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGG--------RGGGRGGGSYGGGYGG- 132

Query: 124 YQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGA 183
                         R S   GGGGG   CF CGE GH+AR+C   + GGGG  GGGGGG 
Sbjct: 133 --------------RGSGGRGGGGGDNSCFKCGEPGHMAREC---SQGGGGYSGGGGGG- 192

Query: 184 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDC 229
                          R G+GGG GGGGGG  C++CGE GH ARDC
Sbjct: 193 ---------------RYGSGGGGGGGGGGLSCYSCGESGHFARDC 195

[Close]
BLAST of CsaV3_3G000760 vs. ExPASy TrEMBL
Match: A0A0A0L4X7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 1.7e-143
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 

Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG
Sbjct: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG 240
           GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG 240

Query: 241 GRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS 274
           GRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS
Sbjct: 241 GRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS 273

[Close]
BLAST of CsaV3_3G000760 vs. ExPASy TrEMBL
Match: A0A5D3CJR2 (Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00680 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.9e-132
Identity = 266/277 (96.03%), Postives = 266/277 (96.03%), Query Frame = 0 

Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120
           DGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
            GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGG
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGG 180

Query: 181 GGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSG 240
           GG GGGACYNCGGFGHLARDCNRGGAGGGS GGGGGGGCFNCGEYGHIARDCQNESRGS 
Sbjct: 181 GGSGGGACYNCGGFGHLARDCNRGGAGGGS-GGGGGGGCFNCGEYGHIARDCQNESRGS- 240

Query: 241 GGGGGRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS 274
           GGGGGRF  GGGGGGGSNTCFNCGKSGHFARECPDAS
Sbjct: 241 GGGGGRF--GGGGGGGSNTCFNCGKSGHFARECPDAS 272

[Close]
BLAST of CsaV3_3G000760 vs. ExPASy TrEMBL
Match: E5RDD6 (Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.9e-132
Identity = 266/277 (96.03%), Postives = 266/277 (96.03%), Query Frame = 0 

Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120
           DGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
            GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGG
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGG 180

Query: 181 GGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSG 240
           GG GGGACYNCGGFGHLARDCNRGGAGGGS GGGGGGGCFNCGEYGHIARDCQNESRGS 
Sbjct: 181 GGSGGGACYNCGGFGHLARDCNRGGAGGGS-GGGGGGGCFNCGEYGHIARDCQNESRGS- 240

Query: 241 GGGGGRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS 274
           GGGGGRF  GGGGGGGSNTCFNCGKSGHFARECPDAS
Sbjct: 241 GGGGGRF--GGGGGGGSNTCFNCGKSGHFARECPDAS 272

[Close]
BLAST of CsaV3_3G000760 vs. ExPASy TrEMBL
Match: A0A1S3BKK1 (cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.9e-132
Identity = 266/277 (96.03%), Postives = 266/277 (96.03%), Query Frame = 0 

Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120
           DGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
            GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGG
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGG 180

Query: 181 GGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSG 240
           GG GGGACYNCGGFGHLARDCNRGGAGGGS GGGGGGGCFNCGEYGHIARDCQNESRGS 
Sbjct: 181 GGSGGGACYNCGGFGHLARDCNRGGAGGGS-GGGGGGGCFNCGEYGHIARDCQNESRGS- 240

Query: 241 GGGGGRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS 274
           GGGGGRF  GGGGGGGSNTCFNCGKSGHFARECPDAS
Sbjct: 241 GGGGGRF--GGGGGGGSNTCFNCGKSGHFARECPDAS 272

[Close]
BLAST of CsaV3_3G000760 vs. ExPASy TrEMBL
Match: A0A6J1HNK3 (cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111465226 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.4e-124
Identity = 250/271 (92.25%), Postives = 253/271 (93.36%), Query Frame = 0 

Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGGYGFGGWRGGDRRNG+SGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGR-GGGGGGYGFGGWRGGDRRNGSSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           GGCYQCGEQGHLARDCTR SNRGGGGGGGGGCFTCGEVGHLARDCPRGNS     GGG G
Sbjct: 121 GGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS-----GGGAG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG 240
           GGACYNCGGFGHLARDCNRGGAGGGS  GGGGG CFNCGEYGH+ARDCQNESRGS GGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGS--GGGGGSCFNCGEYGHLARDCQNESRGS-GGGG 240

Query: 241 GRFGGGGGGGGGSNTCFNCGKSGHFARECPD 272
           GRF     GGGG+NTCFNCGKSGHFARECPD
Sbjct: 241 GRF-----GGGGANTCFNCGKSGHFARECPD 256

[Close]
BLAST of CsaV3_3G000760 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 209.9 bits (533), Expect = 2.5e-54
Identity = 155/297 (52.19%), Postives = 179/297 (60.27%), Query Frame = 0 

Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGGRGGRGG----------GGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G GG     G          GG GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 NSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSG- 184
               G G CY CG+ GH ARDC +    N GGGGGGG  C++CGEVGHLA+DC  G+ G 
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 189

Query: 185 --GGGGGGGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQ 244
             GGGGG G GG  CY CGG GH ARDC +    GG   GGGG  C+ CG  GHIA+ C 
Sbjct: 190 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQ---NGGGNVGGGGSTCYTCGGVGHIAKVCT 249

Query: 245 NESRGSGGGGG-----------------GRFGGGGGGGGGSNTCFNCGKSGHFAREC 270
           ++    GGGGG                  R  G  GGGGGSN CF CGK GHFAREC
Sbjct: 250 SKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297

[Close]
BLAST of CsaV3_3G000760 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 186.8 bits (473), Expect = 2.3e-47
Identity = 147/289 (50.87%), Postives = 167/289 (57.79%), Query Frame = 0 

Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGGY-----GFGGWRGGDRRNGN 124
           KA+ V A  G S  + +N  G G  RGG G G    G  G+     G GG  GG  R   
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 125 SGAGGGGCYQCGEQGHLARDCTRPSN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGG 184
              GG GCY CG+ GH ARDCT   N   RG   GG  GC+TCG+VGH+ARDC + + G 
Sbjct: 130 ---GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGN 189

Query: 185 GGGGGG--GGGGACYNCGGFGHLARDC-NRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQ 244
           G   G   GG   CY CG  GH ARDC  +  AG    GGGG G C++CG  GHIARDC 
Sbjct: 190 GDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA 249

Query: 245 NESRGSGG----GGGGRFG-----GGGGGGGGSNTCFNCGKSGHFAREC 270
            + + S G    GG G         G GGGG  N C+ CGK GHFAREC
Sbjct: 250 TKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295

[Close]
BLAST of CsaV3_3G000760 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-35
Identity = 115/232 (49.57%), Postives = 135/232 (58.19%), Query Frame = 0 

Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGS--SGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGGG 123
            KAI+V   DG+   GN   + GG  GGRGG GGG GGG G GG  G          GGG
Sbjct: 69  PKAIDVSGPDGAPVQGN---SGGGSSGGRGGFGGGRGGGRGSGGGYG----------GGG 128

Query: 124 GCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGG 183
           G Y                 RGGGG GG  C+ CGE GH+ARDC  G  G GGGGGG GG
Sbjct: 129 GGY---------------GGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGG 188

Query: 184 GACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESR 234
           G  Y  GG G+          GGG GGGGGGG C++CGE GH ARDC +  R
Sbjct: 189 GGGYGGGGGGY---------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]
BLAST of CsaV3_3G000760 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-32
Identity = 107/225 (47.56%), Postives = 125/225 (55.56%), Query Frame = 0 

Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGGGGC 123
            KAIEV   DG+        GG  GGRGG GGGGG        RGG R  G+ G G GG 
Sbjct: 73  PKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGG--------RGGGRGGGSYGGGYGG- 132

Query: 124 YQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGA 183
                         R S   GGGGG   CF CGE GH+AR+C   + GGGG  GGGGGG 
Sbjct: 133 --------------RGSGGRGGGGGDNSCFKCGEPGHMAREC---SQGGGGYSGGGGGG- 192

Query: 184 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDC 229
                          R G+GGG GGGGGG  C++CGE GH ARDC
Sbjct: 193 ---------------RYGSGGGGGGGGGGLSCYSCGESGHFARDC 195

The following BLAST results are available for this feature:
BLAST of CsaV3_3G000760 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146143.13.6e-143100.00cold shock domain-containing protein 3 [Cucumis sativus] >KGN55657.1 hypothetica... [more]
XP_008448549.11.4e-13196.03PREDICTED: cold shock domain-containing protein 3 [Cucumis melo] >ADN33944.1 col... [more]
XP_038876618.11.4e-13195.97cold shock domain-containing protein 3 [Benincasa hispida][more]
XP_023540854.18.9e-12692.67cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >XP_023... [more]
KAG6577777.12.6e-12592.99Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG701581... [more]
BLAST of CsaV3_3G000760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94C693.6e-5352.19Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P... [more]
O656393.3e-4650.87Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1[more]
P274841.2e-3750.18Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1[more]
Q411881.7e-3449.57Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1[more]
Q388961.7e-3147.56Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P... [more]
BLAST of CsaV3_3G000760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4X71.7e-143100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1[more]
A0A5D3CJR26.9e-13296.03Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
E5RDD66.9e-13296.03Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4... [more]
A0A1S3BKK16.9e-13296.03cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 P... [more]
A0A6J1HNK31.4e-12492.25cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
BLAST of CsaV3_3G000760 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G17870.12.5e-5452.19cold shock domain protein 3 [more]
AT4G36020.12.3e-4750.87cold shock domain protein 1 [more]
AT4G38680.11.2e-3549.57glycine rich protein 2 [more]
AT2G21060.11.2e-3247.56glycine-rich protein 2B [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 203..221
score: 50.66
coord: 143..158
score: 45.31
coord: 84..95
score: 44.79
coord: 170..180
score: 45.45
NoneNo IPR availableGENE3D2.40.50.140coord: 1..70
e-value: 4.8E-25
score: 89.3
NoneNo IPR availableGENE3D4.10.60.10coord: 148..174
e-value: 1.5E-7
score: 32.9
coord: 211..237
e-value: 1.9E-7
score: 32.6
coord: 250..273
e-value: 2.1E-8
score: 35.7
coord: 109..147
e-value: 2.7E-6
score: 28.9
coord: 179..205
e-value: 3.9E-5
score: 25.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..96
NoneNo IPR availablePANTHERPTHR46565COLD SHOCK DOMAIN PROTEIN 2coord: 139..273
NoneNo IPR availablePANTHERPTHR46565COLD SHOCK DOMAIN PROTEIN 2coord: 113..144
coord: 1..113
NoneNo IPR availablePANTHERPTHR46565:SF12COLD SHOCK PROTEIN 2coord: 113..144
coord: 139..273
NoneNo IPR availablePANTHERPTHR46565:SF12COLD SHOCK PROTEIN 2coord: 1..113
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 44..62
score: 40.09
coord: 8..23
score: 61.03
coord: 29..38
score: 59.44
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 7..70
e-value: 1.1E-22
score: 79.6
IPR002059Cold-shock protein, DNA-bindingPROSITEPS51857CSD_2coord: 5..71
score: 30.335478
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 7..69
e-value: 3.70969E-24
score: 90.3306
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 255..271
e-value: 5.9E-6
score: 35.8
coord: 214..230
e-value: 2.5E-5
score: 33.7
coord: 122..138
e-value: 2.9E-4
score: 30.2
coord: 183..199
e-value: 4.0E-4
score: 29.7
coord: 151..167
e-value: 2.6E-5
score: 33.7
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 151..166
e-value: 1.2E-7
score: 31.5
coord: 214..229
e-value: 4.3E-7
score: 29.7
coord: 122..137
e-value: 2.9E-6
score: 27.1
coord: 183..197
e-value: 3.5E-6
score: 26.8
coord: 254..270
e-value: 5.3E-8
score: 32.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 215..230
score: 10.938377
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 152..167
score: 11.086722
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 123..138
score: 11.004309
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 256..271
score: 11.432861
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 184..197
score: 10.476859
IPR011129Cold shock domainSMARTSM00357csp_8coord: 7..72
e-value: 1.5E-24
score: 97.6
IPR019844Cold-shock (CSD) domainPROSITEPS00352CSD_1coord: 19..38
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 4..74
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 237..271
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 183..230
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 113..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G000760.1CsaV3_3G000760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding