CsaV3_2G026390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G026390
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 18061469 .. 18061943 (-)
RNA-Seq ExpressionCsaV3_2G026390
SyntenyCsaV3_2G026390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAATTGGCTTTGTGTTTGCACCAAGTCAAATGTTCCTAACAGCGTGGAAAATGATGGGAAAAGAAAGAAATTAAAGGCTAAGTCAAAGGAGTTGGTAATCTAAGTATATATAAAGTGCTACACCACCGCCCTTTGCGATTTGGTAGAAATTCTATCGGTGTTTCTTTGTATACATAAGGGCAACTTCCTAAATACTCTTTTAGATCATTTTTGTAGATTCAAAAGCAAGGATGAAGGCTAGGTTTTTTGGAGTTTTTGCTGTGATGACACTGTTGGCAATGGTGTTTGTTCATGTGGATTGCAGACACCTCAGATCTCGAGTGGAAACTCTGCCCACGGTTGGAACTGGACGAGTTGAGAAAGTAACCAAAGGTGACACAAATGGCCTTGTTAGCTTCAGTGGTCATCGGAAGGGAAGCTGGGCATTCAAGCATGCTTCCGGACCGAGTATGAGAGGACCAGGACACTAG

mRNA sequence

ATGAACAATTGGCTTTGTGTTTGCACCAAGTCAAATGTTCCTAACAGCGTGGAAAATGATGGGAAAAGAAAGAAATTAAAGGCTAAGTCAAAGGAGTTGATCATTTTTGTAGATTCAAAAGCAAGGATGAAGGCTAGGTTTTTTGGAGTTTTTGCTGTGATGACACTGTTGGCAATGGTGTTTGTTCATGTGGATTGCAGACACCTCAGATCTCGAGTGGAAACTCTGCCCACGGTTGGAACTGGACGAGTTGAGAAAGTAACCAAAGGTGACACAAATGGCCTTGTTAGCTTCAGTGGTCATCGGAAGGGAAGCTGGGCATTCAAGCATGCTTCCGGACCGAGTATGAGAGGACCAGGACACTAG

Coding sequence (CDS)

ATGAACAATTGGCTTTGTGTTTGCACCAAGTCAAATGTTCCTAACAGCGTGGAAAATGATGGGAAAAGAAAGAAATTAAAGGCTAAGTCAAAGGAGTTGATCATTTTTGTAGATTCAAAAGCAAGGATGAAGGCTAGGTTTTTTGGAGTTTTTGCTGTGATGACACTGTTGGCAATGGTGTTTGTTCATGTGGATTGCAGACACCTCAGATCTCGAGTGGAAACTCTGCCCACGGTTGGAACTGGACGAGTTGAGAAAGTAACCAAAGGTGACACAAATGGCCTTGTTAGCTTCAGTGGTCATCGGAAGGGAAGCTGGGCATTCAAGCATGCTTCCGGACCGAGTATGAGAGGACCAGGACACTAG

Protein sequence

MNNWLCVCTKSNVPNSVENDGKRKKLKAKSKELIIFVDSKARMKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHRKGSWAFKHASGPSMRGPGH*
Homology
BLAST of CsaV3_2G026390 vs. NCBI nr
Match: KAE8652069.1 (hypothetical protein Csa_018550 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 3.4e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0

Query: 1   MNNWLCVCTKSNVPNSVENDGKRKKLKAKSKELIIFVDSKARMKARFFGVFAVMTLLAMV 60
           MNNWLCVCTKSNVPNSVENDGKRKKLKAKSKELIIFVDSKARMKARFFGVFAVMTLLAMV
Sbjct: 1   MNNWLCVCTKSNVPNSVENDGKRKKLKAKSKELIIFVDSKARMKARFFGVFAVMTLLAMV 60

Query: 61  FVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHRKGSWAFKHASGPSMRGPG 120
           FVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHRKGSWAFKHASGPSMRGPG
Sbjct: 61  FVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHRKGSWAFKHASGPSMRGPG 120

Query: 121 H 122
           H
Sbjct: 121 H 121

BLAST of CsaV3_2G026390 vs. NCBI nr
Match: KAA0060930.1 (hypothetical protein E6C27_scaffold501G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 7.6e-53
Identity = 113/129 (87.60%), Postives = 115/129 (89.15%), Query Frame = 0

Query: 1   MNNWLCVCTKSNVPNSVENDGKRKKLKAKSKELIIF--------VDSKARMKARFFGVFA 60
           MNN LCVCTKSNVPNSVENDGKRKKLKAKSKEL  F        VDSKARMK  FFGVFA
Sbjct: 1   MNNCLCVCTKSNVPNSVENDGKRKKLKAKSKELGNFLNTHLDSIVDSKARMKPSFFGVFA 60

Query: 61  VMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHRKGSWAFKHAS 120
           VM LLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDT+GLVSF+GHRKGSWAFKHAS
Sbjct: 61  VMILLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTSGLVSFNGHRKGSWAFKHAS 120

Query: 121 GPSMRGPGH 122
           GPSMRGPGH
Sbjct: 121 GPSMRGPGH 129

BLAST of CsaV3_2G026390 vs. NCBI nr
Match: KAG6585686.1 (hypothetical protein SDJN03_18419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-15
Identity = 51/79 (64.56%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 43  MKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHR 102
           MK    GV AVM LLAMVFVHVDCR L S  +T   +GTGR E V KG+T   V F G R
Sbjct: 1   MKRCCVGVLAVMILLAMVFVHVDCRVLTSMGDTRAVMGTGR-EHVGKGNTTEFVRFGGGR 60

Query: 103 KGSWAFKHASGPSMRGPGH 122
           KG WAFKH SGPS RGPGH
Sbjct: 61  KGRWAFKHTSGPSKRGPGH 78

BLAST of CsaV3_2G026390 vs. ExPASy TrEMBL
Match: A0A5A7V0S4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00630 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.7e-53
Identity = 113/129 (87.60%), Postives = 115/129 (89.15%), Query Frame = 0

Query: 1   MNNWLCVCTKSNVPNSVENDGKRKKLKAKSKELIIF--------VDSKARMKARFFGVFA 60
           MNN LCVCTKSNVPNSVENDGKRKKLKAKSKEL  F        VDSKARMK  FFGVFA
Sbjct: 1   MNNCLCVCTKSNVPNSVENDGKRKKLKAKSKELGNFLNTHLDSIVDSKARMKPSFFGVFA 60

Query: 61  VMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHRKGSWAFKHAS 120
           VM LLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDT+GLVSF+GHRKGSWAFKHAS
Sbjct: 61  VMILLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTSGLVSFNGHRKGSWAFKHAS 120

Query: 121 GPSMRGPGH 122
           GPSMRGPGH
Sbjct: 121 GPSMRGPGH 129

BLAST of CsaV3_2G026390 vs. ExPASy TrEMBL
Match: A0A0A0LKP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G355010 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.4e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 43  MKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHR 102
           MKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHR
Sbjct: 1   MKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHR 60

Query: 103 KGSWAFKHASGPSMRGPGH 122
           KGSWAFKHASGPSMRGPGH
Sbjct: 61  KGSWAFKHASGPSMRGPGH 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652069.13.4e-61100.00hypothetical protein Csa_018550 [Cucumis sativus][more]
KAA0060930.17.6e-5387.60hypothetical protein E6C27_scaffold501G00630 [Cucumis melo var. makuwa][more]
KAG6585686.12.8e-1564.56hypothetical protein SDJN03_18419, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V0S43.7e-5387.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LKP91.4e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G355010 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G026390.1CsaV3_2G026390.1mRNA