CsaV3_1G046400 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G046400
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 32204688 .. 32204857 (-)
RNA-Seq Expression	CsaV3_1G046400
Synteny	CsaV3_1G046400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCCGCAAGCCCTCCACCTTCAACCAGTCACCCACCGTCGGCTAAAAGTTCTATCCACGCTTCAACTTTGTTCACGTCTGTCGAGTTCAACCATGTGAGTTCTTCAAGTCCCACTTCAGCCGTCGAGTGTCAACCTTGTTTTGGCGCACCGCTCATGTCTGCTGTTTGA

mRNA sequence

GCCGCAAGCCCTCCACCTTCAACCAGTCACCCACCGTCGGCTAAAAGTTCTATCCACGCTTCAACTTTGTTCACGTCTGTCGAGTTCAACCATGTGAGTTCTTCAAGTCCCACTTCAGCCGTCGAGTGTCAACCTTGTTTTGGCGCACCGCTCATGTCTGCTGTTTGA

Coding sequence (CDS)

GCCGCAAGCCCTCCACCTTCAACCAGTCACCCACCGTCGGCTAAAAGTTCTATCCACGCTTCAACTTTGTTCACGTCTGTCGAGTTCAACCATGTGAGTTCTTCAAGTCCCACTTCAGCCGTCGAGTGTCAACCTTGTTTTGGCGCACCGCTCATGTCTGCTGTTTGA

Protein sequence

AASPPPSTSHPPSAKSSIHASTLFTSVEFNHVSSSSPTSAVECQPCFGAPLMSAV*

Homology

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BLAST of CsaV3_1G046400 vs. NCBI nr
Match: KAE8653668.1 (hypothetical protein Csa_023632, partial [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 6.7e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  AASPPPSTSHPPSAKSSIHASTLFTSVEFNHVSSSSPTSAVECQPCFGAPLMSAV 56
          AASPPPSTSHPPSAKSSIHASTLFTSVEFNHVSSSSPTSAVECQPCFGAPLMSAV
Sbjct: 1  AASPPPSTSHPPSAKSSIHASTLFTSVEFNHVSSSSPTSAVECQPCFGAPLMSAV 55

The following BLAST results are available for this feature:

BLAST of CsaV3_1G046400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653668.1	6.7e-20	100.00	hypothetical protein Csa_023632, partial [Cucumis sativus]	[more]

BLAST of CsaV3_1G046400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G046400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G046400 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G046400.1	CsaV3_1G046400.1	mRNA