CsaV3_1G003770 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CGCCTAAGTGCGTTTGAACCATACGAATTCACTATTTAAGGCTCAGATGTTGCTTCCTCCACTTCCCCGTCACCAATTCTCATTCCATGCTCTGTCTTACACTCTAAAACCTCCCGTCGTCGCTCTTCTTTCTTCCTTCTTCTCTAATGGAACCCTCTCTTGACTCCAGGAAGCGTCTTCGGGACGATTCCAACGACTCCCTCTTCAATTCTATTGGATCCAATTCCAAGTTCCTCCGACTTGAAAATCCGGCTGCCTCCAACTTCGATGCGCCGGTTTCACACTCGACCGATTCGTTTCACTCGCATCACACAATTCAGGAAGACCTGCTGAAGATTCTAGACGATACCGACGCTTCCATAGATCGGGAGGCGGGGATTCAAGATCTTGATTCGGTGATTAGAAGCTTCGAGAAGGAAATTGAAGTGCCGGTGACGGTGACGGTACCTGTTGTTCAACCTGAACTTGGATTTCTTTTAGAAGCGTCGGATGATGAATTAGGGCTTCCGCCTGCTGCTGGTGAGAAAGAGGAAATTGAAGAAGCGGAGTTTTCGGGTAGCGGTGGTGTGAAAGGGGGTTTAGGGTTCGAGGATGAAATTGTTTCGAATTACTGTTGGTTTGATAATTTGAGATGTGAGATTAAGGAATGGAGTACGGAAGAGGAAGAGGAGGTGGTGGCGTTGGGTGGATTGTTTGATCATACGGATGTGGCGGCGGAATTGCCGACGGCGTATCGATCGGAGAGGATGCCGTGTTTATAATAGTTAATTGAACACACTTTGTTTTATTTGTATTTGTATTCGTAAGATGAAGAAACTAAAAACTTTGGGGAAAAAAAGAAAAGAAAATTGAATGTGTGGAATTTGTTCAAGAAATTACAAAATTACAAGGAGTAACAACAGAAAGAAAAGCATACAATCAATTAATTACACATATTGTTTTCCATGGGTCGGTTGATTCATCGATTTTACGTACACTCATAGTTAGTTTGAACTTACAAACTTAAGAGTTTAGAAAAATCACATGAACTATTTAGTGAGATACTTAAATTTGTGGGTGTGAATGTGACTTCACCATATAAATGGAAAGTTGGAGTAGTTTTGCTTAGTCCATATGTGGATATGGATTAGTTCAAGTAGTGATCAAACTCAATAAAATTGGCTATCTTTTCTTCCTTAGTTCTTGTACAAAATTAGACACTAAATTGATACCAATCTTA ATGGAACCCTCTCTTGACTCCAGGAAGCGTCTTCGGGACGATTCCAACGACTCCCTCTTCAATTCTATTGGATCCAATTCCAAGTTCCTCCGACTTGAAAATCCGGCTGCCTCCAACTTCGATGCGCCGGTTTCACACTCGACCGATTCGTTTCACTCGCATCACACAATTCAGGAAGACCTGCTGAAGATTCTAGACGATACCGACGCTTCCATAGATCGGGAGGCGGGGATTCAAGATCTTGATTCGGTGATTAGAAGCTTCGAGAAGGAAATTGAAGTGCCGGTGACGGTGACGGTACCTGTTGTTCAACCTGAACTTGGATTTCTTTTAGAAGCGTCGGATGATGAATTAGGGCTTCCGCCTGCTGCTGGTGAGAAAGAGGAAATTGAAGAAGCGGAGTTTTCGGGTAGCGGTGGTGTGAAAGGGGGTTTAGGGTTCGAGGATGAAATTGTTTCGAATTACTGTTGGTTTGATAATTTGAGATGTGAGATTAAGGAATGGAGTACGGAAGAGGAAGAGGAGGTGGTGGCGTTGGGTGGATTGTTTGATCATACGGATGTGGCGGCGGAATTGCCGACGGCGTATCGATCGGAGAGGATGCCGTGTTTATAA ATGGAACCCTCTCTTGACTCCAGGAAGCGTCTTCGGGACGATTCCAACGACTCCCTCTTCAATTCTATTGGATCCAATTCCAAGTTCCTCCGACTTGAAAATCCGGCTGCCTCCAACTTCGATGCGCCGGTTTCACACTCGACCGATTCGTTTCACTCGCATCACACAATTCAGGAAGACCTGCTGAAGATTCTAGACGATACCGACGCTTCCATAGATCGGGAGGCGGGGATTCAAGATCTTGATTCGGTGATTAGAAGCTTCGAGAAGGAAATTGAAGTGCCGGTGACGGTGACGGTACCTGTTGTTCAACCTGAACTTGGATTTCTTTTAGAAGCGTCGGATGATGAATTAGGGCTTCCGCCTGCTGCTGGTGAGAAAGAGGAAATTGAAGAAGCGGAGTTTTCGGGTAGCGGTGGTGTGAAAGGGGGTTTAGGGTTCGAGGATGAAATTGTTTCGAATTACTGTTGGTTTGATAATTTGAGATGTGAGATTAAGGAATGGAGTACGGAAGAGGAAGAGGAGGTGGTGGCGTTGGGTGGATTGTTTGATCATACGGATGTGGCGGCGGAATTGCCGACGGCGTATCGATCGGAGAGGATGCCGTGTTTATAA MEPSLDSRKRLRDDSNDSLFNSIGSNSKFLRLENPAASNFDAPVSHSTDSFHSHHTIQEDLLKILDDTDASIDREAGIQDLDSVIRSFEKEIEVPVTVTVPVVQPELGFLLEASDDELGLPPAAGEKEEIEEAEFSGSGGVKGGLGFEDEIVSNYCWFDNLRCEIKEWSTEEEEEVVALGGLFDHTDVAAELPTAYRSERMPCL* Homology
BLAST of CsaV3_1G003770 vs. NCBI nr
Match: KGN63814.1 (hypothetical protein Csa_013978 [Cucumis sativus]) HSP 1 Score: 404.8 bits (1039), Expect = 4.3e-109 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. NCBI nr
Match: TYK28413.1 (uncharacterized protein E5676_scaffold629G00410 [Cucumis melo var. makuwa]) HSP 1 Score: 359.0 bits (920), Expect = 2.7e-95 Identity = 189/205 (92.20%), Postives = 192/205 (93.66%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. NCBI nr
Match: XP_008453684.1 (PREDICTED: uncharacterized protein LOC103494333 [Cucumis melo]) HSP 1 Score: 356.7 bits (914), Expect = 1.4e-94 Identity = 188/205 (91.71%), Postives = 191/205 (93.17%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. NCBI nr
Match: KAA0059746.1 (uncharacterized protein E6C27_scaffold34725G00010 [Cucumis melo var. makuwa]) HSP 1 Score: 356.7 bits (914), Expect = 1.4e-94 Identity = 188/205 (91.71%), Postives = 191/205 (93.17%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. NCBI nr
Match: XP_038890344.1 (uncharacterized protein LOC120079943 [Benincasa hispida]) HSP 1 Score: 298.5 bits (763), Expect = 4.4e-77 Identity = 165/208 (79.33%), Postives = 173/208 (83.17%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. ExPASy TrEMBL
Match: A0A0A0LS21 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G022530 PE=4 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 2.1e-109 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. ExPASy TrEMBL
Match: A0A5D3DXI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00410 PE=4 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 1.3e-95 Identity = 189/205 (92.20%), Postives = 192/205 (93.66%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. ExPASy TrEMBL
Match: A0A5A7UZW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34725G00010 PE=4 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 6.6e-95 Identity = 188/205 (91.71%), Postives = 191/205 (93.17%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. ExPASy TrEMBL
Match: A0A1S3BWV1 (uncharacterized protein LOC103494333 OS=Cucumis melo OX=3656 GN=LOC103494333 PE=4 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 6.6e-95 Identity = 188/205 (91.71%), Postives = 191/205 (93.17%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. ExPASy TrEMBL
Match: A0A6J1E5H5 (uncharacterized protein LOC111429674 OS=Cucurbita moschata OX=3662 GN=LOC111429674 PE=4 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 1.5e-62 Identity = 147/214 (68.69%), Postives = 162/214 (75.70%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. TAIR 10
Match: AT1G13360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 70.9 bits (172), Expect = 1.4e-12 Identity = 61/167 (36.53%), Postives = 82/167 (49.10%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. TAIR 10
Match: AT1G13360.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1). ) HSP 1 Score: 66.2 bits (160), Expect = 3.4e-11 Identity = 51/122 (41.80%), Postives = 63/122 (51.64%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. TAIR 10
Match: AT1G13360.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1). ) HSP 1 Score: 66.2 bits (160), Expect = 3.4e-11 Identity = 51/122 (41.80%), Postives = 63/122 (51.64%), Query Frame = 0
BLAST of CsaV3_1G003770 vs. TAIR 10
Match: AT3G25870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13360.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 6.6e-07 Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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