CsGy7G010975 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G010975
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Chlorophyll a/b-binding family protein
Location	Gy14Chr7: 13870773 .. 13871150 (-)
RNA-Seq Expression	CsGy7G010975
Synteny	CsGy7G010975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGACACAATAGTGAACCTACCATGGTTGGTACCTCCATAGCGCTGTTACAAGAGAGATTCAGACAATTGCAGAAAAACAAGCAAAGGAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCTAATAGGGTTGACGCCTCGATAATGCATTTAGAACCAAATGGCTCGTCGACCTCAAGAGATTTGGATTCCAATTCCCTCTCCCTTGGTTTGAACTTGGAGAATAATGCAGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGATGCCAGGTGACACCAAGTTCGAGCTTGGAAACTCATTCATGGTGAGTACATTTAGAAGTTTCGATAGTCCAAATGTCGATACCACTCTTCATCTATAG

mRNA sequence

ATGGGTAGACACAATAGTGAACCTACCATGGTTGGTACCTCCATAGCGCTGTTACAAGAGAGATTCAGACAATTGCAGAAAAACAAGCAAAGGAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCTAATAGGGTTGACGCCTCGATAATGCATTTAGAACCAAATGGCTCGTCGACCTCAAGAGATTTGGATTCCAATTCCCTCTCCCTTGGTTTGAACTTGGAGAATAATGCAGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGATGCCAGGTGACACCAAGTTCGAGCTTGGAAACTCATTCATGGTGAGTACATTTAGAAGTTTCGATAGTCCAAATGTCGATACCACTCTTCATCTATAG

Coding sequence (CDS)

ATGGGTAGACACAATAGTGAACCTACCATGGTTGGTACCTCCATAGCGCTGTTACAAGAGAGATTCAGACAATTGCAGAAAAACAAGCAAAGGAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCTAATAGGGTTGACGCCTCGATAATGCATTTAGAACCAAATGGCTCGTCGACCTCAAGAGATTTGGATTCCAATTCCCTCTCCCTTGGTTTGAACTTGGAGAATAATGCAGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGATGCCAGGTGACACCAAGTTCGAGCTTGGAAACTCATTCATGGTGAGTACATTTAGAAGTTTCGATAGTCCAAATGTCGATACCACTCTTCATCTATAG

Protein sequence

MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPNVDTTLHL*

Homology

[Close]

BLAST of CsGy7G010975 vs. NCBI nr
Match: KAE8646145.1 (hypothetical protein Csa_016195, partial [Cucumis sativus])

HSP 1 Score: 205 bits (522), Expect = 3.82e-66
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
           MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 107
           TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 107

[Close]

BLAST of CsGy7G010975 vs. NCBI nr
Match: KAA0048752.1 (hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583.1 hypothetical protein E5676_scaffold172G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (499), Expect = 2.26e-62
Identity = 109/127 (85.83%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEP--NG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHLEP  NG
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPN 120
           S T R LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFMVST RSFD+ N
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120

Query: 121 VDTTLHL 125
           VDTTLHL
Sbjct: 121 VDTTLHL 126

[Close]

BLAST of CsGy7G010975 vs. NCBI nr
Match: KAG6589104.1 (hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119 bits (298), Expect = 1.24e-31
Identity = 70/95 (73.68%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVD-ASIMHLEPNGS 60
          MGRH+SE TM+GTSIALLQERFRQLQK+KQRRE+KELL+LL +SNRV+ +SIMHLE N S
Sbjct: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60

Query: 61 STSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSM 94
          S SRDL+ +SLSLGLN  ++AGKQV  DIHEAR++
Sbjct: 61 SNSRDLNPDSLSLGLN-SSSAGKQV--DIHEARAL 92

[Close]

BLAST of CsGy7G010975 vs. NCBI nr
Match: KAG6572236.1 (hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117 bits (292), Expect = 4.45e-31
Identity = 77/129 (59.69%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
           M RH+SEP +VGTSIALLQERFRQLQK K RRE+KE++ LL +SN +            S
Sbjct: 3   MSRHSSEPAIVGTSIALLQERFRQLQKEKVRREKKEVVKLLSDSNSL------------S 62

Query: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPNV- 120
           TSRDL  NSLSLGLNL  NAGKQV  D HE R MPGDTK       +  TFRS+D+P+V 
Sbjct: 63  TSRDLAFNSLSLGLNL-GNAGKQV--DSHEGRLMPGDTKL------IPITFRSYDTPDVV 110

Query: 121 ---DTTLHL 125
              DTTLHL
Sbjct: 123 VDVDTTLHL 110

[Close]

BLAST of CsGy7G010975 vs. NCBI nr
Match: XP_023916992.1 (uncharacterized protein LOC112028527 [Quercus suber])

HSP 1 Score: 90.5 bits (223), Expect = 1.94e-20
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRV------DASIMHL 60
           MGR +++PTMV +SIALLQERFRQL+K K+RRE KELLNL  E+ R+      + S +  
Sbjct: 1   MGRQSNDPTMVSSSIALLQERFRQLEKVKERREEKELLNLFAETERIMPTTHFEPSKLSF 60

Query: 61  EPNGSSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSF 120
           +P  ++ +R    +S SL LNL+    KQ D+   +A   P  T     ++ M ST RSF
Sbjct: 61  QPQMTTPNRSTHRDSPSLELNLQT---KQADV---QAMKRPTLTDLWPNDAAMASTSRSF 120

Query: 121 DSPNVDTTLHL 125
           ++ +VDT+LHL
Sbjct: 121 ENSDVDTSLHL 125

[Close]

BLAST of CsGy7G010975 vs. ExPASy TrEMBL
Match: A0A0A0K617 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 241 bits (616), Expect = 1.53e-80
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
           MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPNVD 120
           TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPNVD
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPNVD 120

Query: 121 TTLHL 125
           TTLHL
Sbjct: 121 TTLHL 125

[Close]

BLAST of CsGy7G010975 vs. ExPASy TrEMBL
Match: A0A5D3E685 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00780 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 1.10e-62
Identity = 109/127 (85.83%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEP--NG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHLEP  NG
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPN 120
           S T R LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFMVST RSFD+ N
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120

Query: 121 VDTTLHL 125
           VDTTLHL
Sbjct: 121 VDTTLHL 126

[Close]

BLAST of CsGy7G010975 vs. ExPASy TrEMBL
Match: G7KEN3 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.97e-20
Identity = 59/126 (46.83%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLE-PNGS 60
           MGR +++PTMV +SIALLQERFRQL+K K+RRE K+LL LL   N   AS   L  PN  
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRLVVPNNR 60

Query: 61  STSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPNV 120
            T  D    SLSLGLNL +  G        +  +M  +T     +    ST R+FD+ +V
Sbjct: 61  QTHHD----SLSLGLNLTSKQG--------DKSTMKSNTSLSPWSQGASSTSRNFDTSDV 114

Query: 121 DTTLHL 125
           DT+LHL
Sbjct: 121 DTSLHL 114

[Close]

BLAST of CsGy7G010975 vs. ExPASy TrEMBL
Match: A0A2N9FNY6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16854 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.52e-19
Identity = 59/131 (45.04%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRV------DASIMHL 60
           MGR +++PTMV +SIALLQERFRQL+K K+RRE KELL L  E+ R+      + S +  
Sbjct: 1   MGRQSNDPTMVSSSIALLQERFRQLEKVKERREEKELLKLFAETERIMPTTHFEPSKLSF 60

Query: 61  EPNGSSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSF 120
           +P   +  R    +S SLGLNL+    KQ D    +A  MP         + M ST RSF
Sbjct: 61  QPEMITPHRSTLQDSPSLGLNLQT---KQADF---QAMKMPTLPNLWPNGAAMASTSRSF 120

Query: 121 DSPNVDTTLHL 125
           ++ +VDT+LHL
Sbjct: 121 ENSDVDTSLHL 125

[Close]

BLAST of CsGy7G010975 vs. ExPASy TrEMBL
Match: A0A2P6S1J5 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0156651 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.41e-19
Identity = 61/135 (45.19%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
           MGRH+S+P MV +SIALLQERFRQLQK K+RRE ++LL  L E+ RV  S  H EP   S
Sbjct: 1   MGRHSSDPIMVSSSIALLQERFRQLQKVKERREEQQLLQFLSETERVAPSTRHFEPARPS 60

Query: 61  TSRDL----------DSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVST 120
              D+            +SLSLGLNL+    KQVD  + +  + P  T     +S   S 
Sbjct: 61  FQSDMVLPLRPCTPAADSSLSLGLNLQ---PKQVDYCVMKT-AHPFST-----SSTTTSA 120

Query: 121 FRSFDSPNVDTTLHL 125
            R +D+  +DT+LHL
Sbjct: 121 SRKYDNSELDTSLHL 126

The following BLAST results are available for this feature:

BLAST of CsGy7G010975 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G010975 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646145.1	3.82e-66	100.00	hypothetical protein Csa_016195, partial [Cucumis sativus]	[more]
KAA0048752.1	2.26e-62	85.83	hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583...	[more]
KAG6589104.1	1.24e-31	73.68	hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6572236.1	4.45e-31	59.69	hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023916992.1	1.94e-20	45.04	uncharacterized protein LOC112028527 [Quercus suber]	[more]

BLAST of CsGy7G010975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K617	1.53e-80	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1	[more]
A0A5D3E685	1.10e-62	85.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
G7KEN3	7.97e-20	46.83	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1	[more]
A0A2N9FNY6	1.52e-19	45.04	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16854 PE=4 SV=1	[more]
A0A2P6S1J5	4.41e-19	45.19	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0156651 PE=4...	[more]

BLAST of CsGy7G010975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 15..35
None	No IPR available	PANTHER	PTHR34570:SF12	EXPRESSED PROTEIN	coord: 1..125
None	No IPR available	PANTHER	PTHR34570	OS03G0593100 PROTEIN	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G010975.1	CsGy7G010975.1	mRNA