CsGy7G010610 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G010610
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDefensin-like protein 3
LocationGy14Chr7: 13364819 .. 13365131 (-)
RNA-Seq ExpressionCsGy7G010610
SyntenyCsGy7G010610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGAGAAGGATGGAGAAAGCTCACAGTTGTGCTGTTCATCTTGTTATCCCTTGCTTCCGGTAATGAGAGATCAATTTTGTATGTATTGTTAAAAAAATAATGAAAATAAATAGAGTAATTAATATATAATGGAAGGTGTGTTGGTGTTGTTGGTTCTTACAGGTTGGATGGTGGCGGAGACGGAAGGAAGGGTTTGCTACAGGCCGAGCCCAAGGTTGAAGGGAGTGTGTAGTTCGAACGACGATTGTATTGCAGTGTGCGATGGATTTTGCTCCCATGGAAAGTGCATGTGTGAAGTCCCTTGCTGA

mRNA sequence

ATGGTGGGAGAAGGATGGAGAAAGCTCACAGTTGTGCTGTTCATCTTGTTATCCCTTGCTTCCGGTTGGATGGTGGCGGAGACGGAAGGAAGGGTTTGCTACAGGCCGAGCCCAAGGTTGAAGGGAGTGTGTAGTTCGAACGACGATTGTATTGCAGTGTGCGATGGATTTTGCTCCCATGGAAAGTGCATGTGTGAAGTCCCTTGCTGA

Coding sequence (CDS)

ATGGTGGGAGAAGGATGGAGAAAGCTCACAGTTGTGCTGTTCATCTTGTTATCCCTTGCTTCCGGTTGGATGGTGGCGGAGACGGAAGGAAGGGTTTGCTACAGGCCGAGCCCAAGGTTGAAGGGAGTGTGTAGTTCGAACGACGATTGTATTGCAGTGTGCGATGGATTTTGCTCCCATGGAAAGTGCATGTGTGAAGTCCCTTGCTGA

Protein sequence

MVGEGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCDGFCSHGKCMCEVPC*
Homology
BLAST of CsGy7G010610 vs. ExPASy Swiss-Prot
Match: A4L7R7 (Defensin-1 OS=Pinus sylvestris OX=3349 GN=Def1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.0e-05
Identity = 30/78 (38.46%), Postives = 39/78 (50.00%), Query Frame = 0

Query: 3  GEGWRKLTVVLFILLSLASGWM-VAETEGRVCYRPSPRLKGVCSSNDDCIAVC--DGF-- 62
          G G R  T+ L +LL +  G M V   EGR+C  PS + KG C +N +C  VC  +GF  
Sbjct: 5  GVGSRLSTLFLLVLLVITIGMMQVQVAEGRMCKTPSGKFKGYCVNNTNCKNVCRTEGFPT 64

Query: 63 ------CSHGKCMCEVPC 70
                 +  KC C  PC
Sbjct: 65 GSCDFHVAGRKCYCYKPC 82

BLAST of CsGy7G010610 vs. NCBI nr
Match: XP_031744629.1 (defensin-1-like [Cucumis sativus])

HSP 1 Score: 152 bits (385), Expect = 9.53e-47
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MVGEGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCDGFCSH 60
          MVGEGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCDGFCSH
Sbjct: 1  MVGEGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCDGFCSH 60

Query: 61 GKCMCEVPC 69
          GKCMCEVPC
Sbjct: 61 GKCMCEVPC 69

BLAST of CsGy7G010610 vs. NCBI nr
Match: KAA0062795.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96758.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 7.69e-35
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 4  EGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCDGFCSHGKC 63
          EG RKLTVVL ILLS+ASGWMVAETEGRVC+RP P LKGVCSS++DCIAVCDGFCS GKC
Sbjct: 4  EGRRKLTVVLVILLSVASGWMVAETEGRVCFRPRPTLKGVCSSDEDCIAVCDGFCSLGKC 63

Query: 64 MCEVPC 69
          MC VPC
Sbjct: 64 MCAVPC 69

BLAST of CsGy7G010610 vs. NCBI nr
Match: AHA50469.1 (defensin-like protein 3 [Citrullus lanatus])

HSP 1 Score: 122 bits (307), Expect = 7.91e-35
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 4  EGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCDGFCSHGKC 63
          E WRKLT+VLFI LSLASGWMVAETEGR CYRPSP  KG CSS++DCI VCDGFC+HG C
Sbjct: 5  EEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHGSC 64

Query: 64 MCEVPC 69
          +C VPC
Sbjct: 65 ICTVPC 70

BLAST of CsGy7G010610 vs. NCBI nr
Match: XP_038887289.1 (defensin-like protein 2 [Benincasa hispida])

HSP 1 Score: 102 bits (255), Expect = 7.80e-27
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 1  MVGEGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCD----- 60
          M GEGWRKLTVVLFI L+LASGWMV ETEG+ C++ SP  +G C+SN++C+  CD     
Sbjct: 1  MAGEGWRKLTVVLFIFLALASGWMVVETEGKTCFKQSPSFRGQCTSNNECVGACDNDMWY 60

Query: 61 -GFCSHGKCMCEVPC 69
           G+CS+G C+C V C
Sbjct: 61 NGYCSNGLCICAVHC 75

BLAST of CsGy7G010610 vs. NCBI nr
Match: KAA0062794.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 8.18e-22
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0

Query: 6  WRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCD------GFCS 65
          W+KLT V F+ LS+ASGWM+ ETEG++C++ SP  KG C+SND+C+  CD      G CS
Sbjct: 5  WKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYNGVCS 64

Query: 66 HGKCMCEVPC 69
          +G C+C V C
Sbjct: 65 NGLCICTVIC 74

BLAST of CsGy7G010610 vs. ExPASy TrEMBL
Match: A0A5D3BEY4 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00520 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 3.73e-35
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 4  EGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCDGFCSHGKC 63
          EG RKLTVVL ILLS+ASGWMVAETEGRVC+RP P LKGVCSS++DCIAVCDGFCS GKC
Sbjct: 4  EGRRKLTVVLVILLSVASGWMVAETEGRVCFRPRPTLKGVCSSDEDCIAVCDGFCSLGKC 63

Query: 64 MCEVPC 69
          MC VPC
Sbjct: 64 MCAVPC 69

BLAST of CsGy7G010610 vs. ExPASy TrEMBL
Match: W5RQN1 (Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 122 bits (307), Expect = 3.83e-35
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 4  EGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCDGFCSHGKC 63
          E WRKLT+VLFI LSLASGWMVAETEGR CYRPSP  KG CSS++DCI VCDGFC+HG C
Sbjct: 5  EEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHGSC 64

Query: 64 MCEVPC 69
          +C VPC
Sbjct: 65 ICTVPC 70

BLAST of CsGy7G010610 vs. ExPASy TrEMBL
Match: A0A5D3BCI9 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00530 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.96e-22
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0

Query: 6  WRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCD------GFCS 65
          W+KLT V F+ LS+ASGWM+ ETEG++C++ SP  KG C+SND+C+  CD      G CS
Sbjct: 5  WKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYNGVCS 64

Query: 66 HGKCMCEVPC 69
          +G C+C V C
Sbjct: 65 NGLCICTVIC 74

BLAST of CsGy7G010610 vs. ExPASy TrEMBL
Match: A0A0A0K447 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.54e-20
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 5  GWRKLTVVLFI-LLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCD------GF 64
          GW+KLT V FI LL++ASGWM+ ET G++C++ S   KG C SND+C+  CD      GF
Sbjct: 4  GWKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDMWYDGF 63

Query: 65 CSHGKCMCEVPC 69
          CS+G C+C V C
Sbjct: 64 CSNGLCICTVIC 75

BLAST of CsGy7G010610 vs. ExPASy TrEMBL
Match: A0A5A7V3H5 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00550 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.44e-19
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 3  GEGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVC-------D 62
          GEG RKLTVV+ I L  ASGWMV +TEG  CY+PS   +G C+S ++C  VC       D
Sbjct: 3  GEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDD 62

Query: 63 GFCSHGKCMCEVPC 69
          GFCS  KC+C   C
Sbjct: 63 GFCSGDKCICTEKC 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A4L7R76.0e-0538.46Defensin-1 OS=Pinus sylvestris OX=3349 GN=Def1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_031744629.19.53e-47100.00defensin-1-like [Cucumis sativus][more]
KAA0062795.17.69e-3584.85defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96758.1 defensin-like pro... [more]
AHA50469.17.91e-3578.79defensin-like protein 3 [Citrullus lanatus][more]
XP_038887289.17.80e-2758.67defensin-like protein 2 [Benincasa hispida][more]
KAA0062794.18.18e-2252.86defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like pro... [more]
Match NameE-valueIdentityDescription
A0A5D3BEY43.73e-3584.85Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
W5RQN13.83e-3578.79Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1[more]
A0A5D3BCI93.96e-2252.86Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K4475.54e-2052.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1[more]
A0A5A7V3H52.44e-1952.70Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036574Knottin, scorpion toxin-like superfamilyGENE3D3.30.30.10coord: 25..69
e-value: 1.4E-6
score: 30.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G010610.2CsGy7G010610.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response