Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTCTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTAAGACCTAACTCCGACAAGCGCGTAATCACGACCGCTCAGTTTTTCAAACTCATCGAAGACAAGAATCCCACCATCCGTTTCTCAAATAAGGTCACCCCAAGTATCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGAGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGTCTCGATAATTGGTTGAAACTCTGTTTCGCTACCTGTCCGCTTTGCCGGAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGGCTTCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGATTTTTCTAG
mRNA sequence
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTCTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTAAGACCTAACTCCGACAAGCGCGTAATCACGACCGCTCAGTTTTTCAAACTCATCGAAGACAAGAATCCCACCATCCGTTTCTCAAATAAGGTCACCCCAAGTATCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGAGAGAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGGCTTCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGATTTTTCTAG
Coding sequence (CDS)
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTCTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTAAGACCTAACTCCGACAAGCGCGTAATCACGACCGCTCAGTTTTTCAAACTCATCGAAGACAAGAATCCCACCATCCGTTTCTCAAATAAGGTCACCCCAAGTATCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGAGAGAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGGCTTCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGATTTTTCTAG
Protein sequence
MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPTIRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF*
Homology
BLAST of CsGy6G030020 vs. NCBI nr
Match:
KAE8647565.1 (hypothetical protein Csa_003924 [Cucumis sativus])
HSP 1 Score: 254 bits (648), Expect = 5.60e-85
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
Query: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT
Sbjct: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
Query: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL
Sbjct: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
Query: 121 HGNSIYRFF 129
HGNSIYRFF
Sbjct: 121 HGNSIYRFF 129
BLAST of CsGy6G030020 vs. NCBI nr
Match:
XP_022963437.1 (uncharacterized protein LOC111463642 isoform X2 [Cucurbita moschata] >XP_023517190.1 uncharacterized protein LOC111781027 isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 236 bits (601), Expect = 8.25e-78
Identity = 119/129 (92.25%), Postives = 123/129 (95.35%), Query Frame = 0
Query: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1 MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
Query: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
IRFSNK+T S ADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL
Sbjct: 61 IRFSNKITSSPADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
Query: 121 HGNSIYRFF 129
HGNSIYRFF
Sbjct: 121 HGNSIYRFF 129
BLAST of CsGy6G030020 vs. NCBI nr
Match:
XP_023003554.1 (uncharacterized protein LOC111497121 isoform X2 [Cucurbita maxima])
HSP 1 Score: 231 bits (590), Expect = 3.93e-76
Identity = 117/129 (90.70%), Postives = 121/129 (93.80%), Query Frame = 0
Query: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
MGALSEFFSHLHTMTA F TLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1 MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
Query: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
IRFSNK+T S ADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL
Sbjct: 61 IRFSNKITSSPADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
Query: 121 HGNSIYRFF 129
HGNSIYRFF
Sbjct: 121 HGNSIYRFF 129
BLAST of CsGy6G030020 vs. NCBI nr
Match:
KAA0036272.1 (putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa])
HSP 1 Score: 233 bits (593), Expect = 3.98e-76
Identity = 126/161 (78.26%), Postives = 128/161 (79.50%), Query Frame = 0
Query: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPN+DKRVITTAQF KLIEDKNPT
Sbjct: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
Query: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKV-------------------------------- 120
IRFSNKVTPSIADQCAVCLSEFEEGEKV
Sbjct: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 129
LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS+YRFF
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSMYRFF 161
BLAST of CsGy6G030020 vs. NCBI nr
Match:
XP_022132528.1 (E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia])
HSP 1 Score: 220 bits (560), Expect = 4.24e-71
Identity = 118/161 (73.29%), Postives = 125/161 (77.64%), Query Frame = 0
Query: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP +DKRVITT Q+FKLIE++NPT
Sbjct: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPGADKRVITTTQYFKLIEERNPT 60
Query: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKV-------------------------------- 120
IRFSNK+T S ADQCAVCLSEFEEG+KV
Sbjct: 61 IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 129
LPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Sbjct: 121 LPDDVVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 161
BLAST of CsGy6G030020 vs. ExPASy TrEMBL
Match:
A0A0A0KM08 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 PE=4 SV=1)
HSP 1 Score: 237 bits (605), Expect = 2.85e-78
Identity = 129/161 (80.12%), Postives = 129/161 (80.12%), Query Frame = 0
Query: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT
Sbjct: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
Query: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKV-------------------------------- 120
IRFSNKVTPSIADQCAVCLSEFEEGEKV
Sbjct: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 129
LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 161
BLAST of CsGy6G030020 vs. ExPASy TrEMBL
Match:
A0A6J1HF94 (uncharacterized protein LOC111463642 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463642 PE=4 SV=1)
HSP 1 Score: 236 bits (601), Expect = 4.00e-78
Identity = 119/129 (92.25%), Postives = 123/129 (95.35%), Query Frame = 0
Query: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1 MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
Query: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
IRFSNK+T S ADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL
Sbjct: 61 IRFSNKITSSPADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
Query: 121 HGNSIYRFF 129
HGNSIYRFF
Sbjct: 121 HGNSIYRFF 129
BLAST of CsGy6G030020 vs. ExPASy TrEMBL
Match:
A0A6J1KTN2 (uncharacterized protein LOC111497121 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497121 PE=4 SV=1)
HSP 1 Score: 231 bits (590), Expect = 1.90e-76
Identity = 117/129 (90.70%), Postives = 121/129 (93.80%), Query Frame = 0
Query: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
MGALSEFFSHLHTMTA F TLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1 MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
Query: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
IRFSNK+T S ADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL
Sbjct: 61 IRFSNKITSSPADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
Query: 121 HGNSIYRFF 129
HGNSIYRFF
Sbjct: 121 HGNSIYRFF 129
BLAST of CsGy6G030020 vs. ExPASy TrEMBL
Match:
A0A5A7SYH1 (Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002540 PE=4 SV=1)
HSP 1 Score: 233 bits (593), Expect = 1.92e-76
Identity = 126/161 (78.26%), Postives = 128/161 (79.50%), Query Frame = 0
Query: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPN+DKRVITTAQF KLIEDKNPT
Sbjct: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
Query: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKV-------------------------------- 120
IRFSNKVTPSIADQCAVCLSEFEEGEKV
Sbjct: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 129
LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS+YRFF
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSMYRFF 161
BLAST of CsGy6G030020 vs. ExPASy TrEMBL
Match:
A0A6J1BWI1 (E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC111005363 PE=4 SV=1)
HSP 1 Score: 220 bits (560), Expect = 2.05e-71
Identity = 118/161 (73.29%), Postives = 125/161 (77.64%), Query Frame = 0
Query: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP +DKRVITT Q+FKLIE++NPT
Sbjct: 1 MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPGADKRVITTTQYFKLIEERNPT 60
Query: 61 IRFSNKVTPSIADQCAVCLSEFEEGEKV-------------------------------- 120
IRFSNK+T S ADQCAVCLSEFEEG+KV
Sbjct: 61 IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 129
LPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Sbjct: 121 LPDDVVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 161
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAE8647565.1 | 5.60e-85 | 100.00 | hypothetical protein Csa_003924 [Cucumis sativus] | [more] |
XP_022963437.1 | 8.25e-78 | 92.25 | uncharacterized protein LOC111463642 isoform X2 [Cucurbita moschata] >XP_0235171... | [more] |
XP_023003554.1 | 3.93e-76 | 90.70 | uncharacterized protein LOC111497121 isoform X2 [Cucurbita maxima] | [more] |
KAA0036272.1 | 3.98e-76 | 78.26 | putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666.... | [more] |
XP_022132528.1 | 4.24e-71 | 73.29 | E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KM08 | 2.85e-78 | 80.12 | RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 P... | [more] |
A0A6J1HF94 | 4.00e-78 | 92.25 | uncharacterized protein LOC111463642 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1KTN2 | 1.90e-76 | 90.70 | uncharacterized protein LOC111497121 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
A0A5A7SYH1 | 1.92e-76 | 78.26 | Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=119469... | [more] |
A0A6J1BWI1 | 2.05e-71 | 73.29 | E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC1110... | [more] |
Match Name | E-value | Identity | Description | |