CsGy6G030020 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G030020
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type domain-containing protein
Location	Gy14Chr6: 28409135 .. 28409620 (+)
RNA-Seq Expression	CsGy6G030020
Synteny	CsGy6G030020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTCTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTAAGACCTAACTCCGACAAGCGCGTAATCACGACCGCTCAGTTTTTCAAACTCATCGAAGACAAGAATCCCACCATCCGTTTCTCAAATAAGGTCACCCCAAGTATCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGAGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGTCTCGATAATTGGTTGAAACTCTGTTTCGCTACCTGTCCGCTTTGCCGGAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGGCTTCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGATTTTTCTAG

mRNA sequence

ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTCTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTAAGACCTAACTCCGACAAGCGCGTAATCACGACCGCTCAGTTTTTCAAACTCATCGAAGACAAGAATCCCACCATCCGTTTCTCAAATAAGGTCACCCCAAGTATCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGAGAGAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGGCTTCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGATTTTTCTAG

Coding sequence (CDS)

ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTCTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTAAGACCTAACTCCGACAAGCGCGTAATCACGACCGCTCAGTTTTTCAAACTCATCGAAGACAAGAATCCCACCATCCGTTTCTCAAATAAGGTCACCCCAAGTATCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGAGAGAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGGCTTCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGATTTTTCTAG

Protein sequence

MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPTIRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF*

Homology

[Close]

BLAST of CsGy6G030020 vs. NCBI nr
Match: KAE8647565.1 (hypothetical protein Csa_003924 [Cucumis sativus])

HSP 1 Score: 254 bits (648), Expect = 5.60e-85
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
           IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120

Query: 121 HGNSIYRFF 129
           HGNSIYRFF
Sbjct: 121 HGNSIYRFF 129

[Close]

BLAST of CsGy6G030020 vs. NCBI nr
Match: XP_022963437.1 (uncharacterized protein LOC111463642 isoform X2 [Cucurbita moschata] >XP_023517190.1 uncharacterized protein LOC111781027 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236 bits (601), Expect = 8.25e-78
Identity = 119/129 (92.25%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL
Sbjct: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120

Query: 121 HGNSIYRFF 129
           HGNSIYRFF
Sbjct: 121 HGNSIYRFF 129

[Close]

BLAST of CsGy6G030020 vs. NCBI nr
Match: XP_023003554.1 (uncharacterized protein LOC111497121 isoform X2 [Cucurbita maxima])

HSP 1 Score: 231 bits (590), Expect = 3.93e-76
Identity = 117/129 (90.70%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
           MGALSEFFSHLHTMTA F TLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL
Sbjct: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120

Query: 121 HGNSIYRFF 129
           HGNSIYRFF
Sbjct: 121 HGNSIYRFF 129

[Close]

BLAST of CsGy6G030020 vs. NCBI nr
Match: KAA0036272.1 (putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (593), Expect = 3.98e-76
Identity = 126/161 (78.26%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPN+DKRVITTAQF KLIEDKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKV-------------------------------- 120
           IRFSNKVTPSIADQCAVCLSEFEEGEKV                                
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 129
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS+YRFF
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSMYRFF 161

[Close]

BLAST of CsGy6G030020 vs. NCBI nr
Match: XP_022132528.1 (E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia])

HSP 1 Score: 220 bits (560), Expect = 4.24e-71
Identity = 118/161 (73.29%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP +DKRVITT Q+FKLIE++NPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPGADKRVITTTQYFKLIEERNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKV-------------------------------- 120
           IRFSNK+T S ADQCAVCLSEFEEG+KV                                
Sbjct: 61  IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 129
           LPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Sbjct: 121 LPDDVVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 161

[Close]

BLAST of CsGy6G030020 vs. ExPASy TrEMBL
Match: A0A0A0KM08 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 PE=4 SV=1)

HSP 1 Score: 237 bits (605), Expect = 2.85e-78
Identity = 129/161 (80.12%), Postives = 129/161 (80.12%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKV-------------------------------- 120
           IRFSNKVTPSIADQCAVCLSEFEEGEKV                                
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 129
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 161

[Close]

BLAST of CsGy6G030020 vs. ExPASy TrEMBL
Match: A0A6J1HF94 (uncharacterized protein LOC111463642 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463642 PE=4 SV=1)

HSP 1 Score: 236 bits (601), Expect = 4.00e-78
Identity = 119/129 (92.25%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL
Sbjct: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120

Query: 121 HGNSIYRFF 129
           HGNSIYRFF
Sbjct: 121 HGNSIYRFF 129

[Close]

BLAST of CsGy6G030020 vs. ExPASy TrEMBL
Match: A0A6J1KTN2 (uncharacterized protein LOC111497121 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497121 PE=4 SV=1)

HSP 1 Score: 231 bits (590), Expect = 1.90e-76
Identity = 117/129 (90.70%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
           MGALSEFFSHLHTMTA F TLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL
Sbjct: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 120

Query: 121 HGNSIYRFF 129
           HGNSIYRFF
Sbjct: 121 HGNSIYRFF 129

[Close]

BLAST of CsGy6G030020 vs. ExPASy TrEMBL
Match: A0A5A7SYH1 (Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002540 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 1.92e-76
Identity = 126/161 (78.26%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPN+DKRVITTAQF KLIEDKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKV-------------------------------- 120
           IRFSNKVTPSIADQCAVCLSEFEEGEKV                                
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 129
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS+YRFF
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSMYRFF 161

[Close]

BLAST of CsGy6G030020 vs. ExPASy TrEMBL
Match: A0A6J1BWI1 (E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC111005363 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 2.05e-71
Identity = 118/161 (73.29%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP +DKRVITT Q+FKLIE++NPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPGADKRVITTTQYFKLIEERNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKV-------------------------------- 120
           IRFSNK+T S ADQCAVCLSEFEEG+KV                                
Sbjct: 61  IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 129
           LPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Sbjct: 121 LPDDVVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 161

The following BLAST results are available for this feature:

BLAST of CsGy6G030020 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G030020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647565.1	5.60e-85	100.00	hypothetical protein Csa_003924 [Cucumis sativus]	[more]
XP_022963437.1	8.25e-78	92.25	uncharacterized protein LOC111463642 isoform X2 [Cucurbita moschata] >XP_0235171...	[more]
XP_023003554.1	3.93e-76	90.70	uncharacterized protein LOC111497121 isoform X2 [Cucurbita maxima]	[more]
KAA0036272.1	3.98e-76	78.26	putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666....	[more]
XP_022132528.1	4.24e-71	73.29	E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]	[more]

BLAST of CsGy6G030020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM08	2.85e-78	80.12	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 P...	[more]
A0A6J1HF94	4.00e-78	92.25	uncharacterized protein LOC111463642 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KTN2	1.90e-76	90.70	uncharacterized protein LOC111497121 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7SYH1	1.92e-76	78.26	Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1BWI1	2.05e-71	73.29	E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of CsGy6G030020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47662:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..88 coord: 87..129
None	No IPR available	PANTHER	PTHR47662	FAMILY NOT NAMED	coord: 1..88 coord: 87..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G030020.2	CsGy6G030020.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane