CsGy5G027950 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGTTTCTTCGCTCCCGGTTCTTTCTTCATTGAGCGCCAGCGCTAACATCTCTGATGTTACCTCGTTTTCGCTGAATAGCCCACTCAGTAATATCTGTTCCAAACCGAGCGCTCATCCTTCGTCTTCTATCATCGTTTGTTCTTACAGTGAGTTCCTGTATTTTGTTGCATTTTTTTATTTCCATGTAAATGAACTTTCAATTGTGTATTGGTTTCAGAATCTGGCAACCATACGGTGACAGAGCGGAAAAAGAAGTTGTTGGAGCAATATGGACTTGATCCTAACGAGTTTTTGTCTGAACCTTCCACTAATGTTGGTTCTCCTTCTCTTTGATGATTGTTATTTATAATTTCTTGTCAATCCGAATGGTTTGGAGATGAGTGACTGGCATTGTATTCGTTTTTTCTGTTTGAATTTGTGCAATTACACTTTATCGGCTTCGGAATTGAGTGTTTGGATACTTGGTAATGCTTAATTTTTCTTTATTGTAATCTTTGATTTTCCTTATAGCGAAGAAGAGAAATGCGAAAAACGGGAAAAGGCAAGCAAATTTTTCCGGAGGATCCTAAACCTCAACGACAAACTCACAAGTTACTTCAGGTACGAGTTGTGTTCCTTTTTCCATTTTGTTTGGTGCTTTGCGTTGTGATAATTCATTAGTCTATCTTCCTAAGTAGAGGATGCATCCTTCAGAGGAGATATGTACCGCTCTCTGCTTCAGAGATTACTTCTTCAAAATTTCGAAGTAAAGTGAAAGGGAGAGAAATGATTGTAAAACTTTTCTTACAAGGTCGTTGAACAAATACTTTATTTGGATTCTCCCTCTTGAATATGAATATAAACAAATTGAAATCTAGTATTAGTTTGGTTCTTTAAGTTGATTGAATAATCTTATTTTGAATTCATTCCAGTCAGATCTACATCAAGTTAATCATTTTCAATTGGCCAATTGCCAAATTGAAAACTGAAATACTGATTTTAGTTTTGAGAGAATATTGCGTCTGTTGGTAGAATTTGTCATGTCGATGATAACCATGGATCCTCCAGCGCCTACACATAACGTGTATCACAGATATTTGGGAAGTATAGTAAAAAGATTCCATGCTTTTCTTTAAAAAATAACTCAACAAATATGTTGGCTACCTAACTCAGGTGCTTGGAGGAAGTGCTCGGAGAATGAAGCTACTCTCACCAAAGGGGTTGGATGTACGACCAATGATGGAAGTTGTGAAAGGTGCAGCTTTTGATATTTTGCAGGTTGGAGTTGATTTTAAATATTAGTTTCTTTCACTTTACCAGATCATTCGGTTATGATTCAGAGTTTGTAGATTTCTAGTTTAAGAGCTCATTTGGTAGAGCATATTATATGGTCGTACTTTTCTTGGGTAGGTTGCTGTTAGCCATCCTGTCACAGAAAAAAAGGTCTAATATAATTTGGAAATGCAGGCTGCTGGTGGATGTCCAGCATCTTTAAGGCCTGGTCGTTGGTTAGACTTGTATAGTGGTACCGGATCAGTTGGTATTGAAGCTATGAGCCGTGGATGTTCCGAGGTATGAGTTCATTTGAGAATTTAGTTTGGGCTAACATTTTCTGTAATTTTTAAAAACAACCAACTGATTATAGCTTTCTAACTAATTACGCTTGGATAGGAATTGGCTTGATATACATAATTATTAATTTCAGGATACTTATTCTGTATATCTCTTTTTCTTTTTCTCCTACGTCTAATGTACTTCAACTTCCAGGTGCATTTTGTTGAGATGGATCCATGGGTTGTTTCTGATGTTCTAAGGCCAAATCTGGAATCTACTGGGTTTTTTGATGTTTCGGTCATTCACACAATCCGGGTTGAGAATTTTATAGAACGAGCTGACCAACTTATTGGTATCCCAACTAAACTTTAGTTTTCTCCTTGTTTCTTGTCTCATCCTAAGACTCATTGGCACAAACATGAGCATTGGGTACACTAAGGGTTCTATAGTTTGAGATTGTTGTAGTTTTTAAAATATTTGCTGACAATTGTGATTTTTAGACAAATCAATTGAGACCTGAATTTATTTAGTGTTTGGAAAAAGTCAATTAAAAAACTTGAAAAACGAAAAAACATATTATTATGTTTGGTAAATTTCCGTTAAAATGTCTTGATTTAGCTCTAATGACCCACTTAACATATTATTTTAATAATTTTTATTTTGATATTTAATATCTAATGTATTATAAGATAAATATGTAAAAGTTTATATGATTTAAATTAGGAGTAATGTTGTTTAATTGAAGTCATTTGATAAAATTTAAGAAAATAATTTTTATAAAAATTGAAGCAATCAAATTTTGTTGATTCTGGAAGGAATAGATTTGAAAAGAAAAATGATATATGGAAGTGTACAATTTAACTTTTTAAATTTGTTAGAGGAGACAGAGAATCTTTAGGAAAGTAGATTTCAAAATATGATGTCTATGTGATTTTGCAGATGGAGTCAAATGAGAAGTGATTTTGGAATTAAATAACCAGTTTTATCAAGCAACTTAGTGTGTTTTGGAATACATTCTCAAGTGTTTAATTTAAAAATGAGTTATTATGGAAAAAATTAAAGTGTTCGGCAACCGCTTAAAATAGATTTTGAAGTGTATTTTAAATGGGTTTTTATTAAAAAAGTTTAAATAAAATTGAGTCTTTTGGAAAACAGTTTTCAATCCAAATGGGAGGTTAGATTGTTGAACTTGCATTAACTATAAATGAAAATGGGAAATGTAAATGGTCCTGCTTATCTCACCTTGGTAGGAATAGAGAATCGGTAAAATCAAACAAATTCTCATTTTTGTTTAAGAATTAATGGTAGTGGCATCAATTTCTTTTGGTACAGTACTGTAATTCAATTGAACGTATAAGCTTCTATAATTTTTTATTTAAAGACTACCAATTATTGTGCCTAAGTATATTGTCTTGCGTAGGTACTGAAAGACCATTTGATTACATTAGTGTTACCCCACCGTACACACAAGTTGATTATGGGGTACTCATGGGGCAACTGTCAAAGTCGGCCTTAGTTGGAGAAGATACCTTCATTGTAAGTTGTATTTTTCTTGTTCCTATTTAAATATCCAAATCTTCTTTATGTAAAACCTACTTTATTTAGATCAGGAAAAGTGTACGGTTTTACGAAACCATATGCTTTGCTCGAATTCGTAGTTAATCCTATATTTTTTAAATATGGTTTACCTTCCTTTCTCTGACTTTGATCTTTGTGATCTAGGTGGTTGAATATCCATTGAGGACTGACATGCTGGAATCTTGTGGATGCCTTACTAAGGTAATTTAATCATGTGGATATTTTACATTCACAATGTTATGAATGAATAAAATCAAATTATTAATTGGACCAAATTGTATTTCACCTGATGGAATTTAGTGAGAAGGTACGGTATGGATACTGGGAAACTATATCTTTTGTAACTGGGGGTCAAGTTTAATGTAGTCTGTAATGTAACAACACTATGAGTAATTTCTCAACAAGGCACTTGAAAATTTTATATCTACAAGAAGAGATCAAGGGTCCAAAATCTTACTAATTTCTGTAGCTGCTTTCTTTGTATTTTTTTTTAATATGTGGACATGGGATCATCATCTAAGGAGAATTATTTAGATTTTTACTCCTAATGTCTTTACCTATTGAGTAACAAGTATAATTGTGCAGATTACTGACCGGAGGTTTGGTCGGACACACTTGGCAATTTATGGACCCAAGTGGGCTGAGAAGAAAAAGAAGGAAAAAAAATTAAATTAG ATGGCGGTTTCTTCGCTCCCGGTTCTTTCTTCATTGAGCGCCAGCGCTAACATCTCTGATGTTACCTCGTTTTCGCTGAATAGCCCACTCAGTAATATCTGTTCCAAACCGAGCGCTCATCCTTCGTCTTCTATCATCGTTTGTTCTTACAAATCTGGCAACCATACGGTGACAGAGCGGAAAAAGAAGTTGTTGGAGCAATATGGACTTGATCCTAACGAGTTTTTGTCTGAACCTTCCACTAATCGAAGAAGAGAAATGCGAAAAACGGGAAAAGGCAAGCAAATTTTTCCGGAGGATCCTAAACCTCAACGACAAACTCACAAGTTACTTCAGGTGCTTGGAGGAAGTGCTCGGAGAATGAAGCTACTCTCACCAAAGGGGTTGGATGTACGACCAATGATGGAAGTTGTGAAAGGTGCAGCTTTTGATATTTTGCAGGCTGCTGGTGGATGTCCAGCATCTTTAAGGCCTGGTCGTTGGTTAGACTTGTATAGTGGTACCGGATCAGTTGGTATTGAAGCTATGAGCCGTGGATGTTCCGAGGTGCATTTTGTTGAGATGGATCCATGGGTTGTTTCTGATGTTCTAAGGCCAAATCTGGAATCTACTGGGTTTTTTGATGTTTCGGTCATTCACACAATCCGGGTTGAGAATTTTATAGAACGAGCTGACCAACTTATTGGTACTGAAAGACCATTTGATTACATTAGTGTTACCCCACCGTACACACAAGTTGATTATGGGGTACTCATGGGGCAACTGTCAAAGTCGGCCTTAGTTGGAGAAGATACCTTCATTGTGGTTGAATATCCATTGAGGACTGACATGCTGGAATCTTGTGGATGCCTTACTAAGATTACTGACCGGAGGTTTGGTCGGACACACTTGGCAATTTATGGACCCAAGTGGGCTGAGAAGAAAAAGAAGGAAAAAAAATTAAATTAG ATGGCGGTTTCTTCGCTCCCGGTTCTTTCTTCATTGAGCGCCAGCGCTAACATCTCTGATGTTACCTCGTTTTCGCTGAATAGCCCACTCAGTAATATCTGTTCCAAACCGAGCGCTCATCCTTCGTCTTCTATCATCGTTTGTTCTTACAAATCTGGCAACCATACGGTGACAGAGCGGAAAAAGAAGTTGTTGGAGCAATATGGACTTGATCCTAACGAGTTTTTGTCTGAACCTTCCACTAATCGAAGAAGAGAAATGCGAAAAACGGGAAAAGGCAAGCAAATTTTTCCGGAGGATCCTAAACCTCAACGACAAACTCACAAGTTACTTCAGGTGCTTGGAGGAAGTGCTCGGAGAATGAAGCTACTCTCACCAAAGGGGTTGGATGTACGACCAATGATGGAAGTTGTGAAAGGTGCAGCTTTTGATATTTTGCAGGCTGCTGGTGGATGTCCAGCATCTTTAAGGCCTGGTCGTTGGTTAGACTTGTATAGTGGTACCGGATCAGTTGGTATTGAAGCTATGAGCCGTGGATGTTCCGAGGTGCATTTTGTTGAGATGGATCCATGGGTTGTTTCTGATGTTCTAAGGCCAAATCTGGAATCTACTGGGTTTTTTGATGTTTCGGTCATTCACACAATCCGGGTTGAGAATTTTATAGAACGAGCTGACCAACTTATTGGTACTGAAAGACCATTTGATTACATTAGTGTTACCCCACCGTACACACAAGTTGATTATGGGGTACTCATGGGGCAACTGTCAAAGTCGGCCTTAGTTGGAGAAGATACCTTCATTGTGGTTGAATATCCATTGAGGACTGACATGCTGGAATCTTGTGGATGCCTTACTAAGATTACTGACCGGAGGTTTGGTCGGACACACTTGGCAATTTATGGACCCAAGTGGGCTGAGAAGAAAAAGAAGGAAAAAAAATTAAATTAG MAVSSLPVLSSLSASANISDVTSFSLNSPLSNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNRRREMRKTGKGKQIFPEDPKPQRQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGAAFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNLESTGFFDVSVIHTIRVENFIERADQLIGTERPFDYISVTPPYTQVDYGVLMGQLSKSALVGEDTFIVVEYPLRTDMLESCGCLTKITDRRFGRTHLAIYGPKWAEKKKKEKKLN* Homology
BLAST of CsGy5G027950 vs. ExPASy Swiss-Prot
Match: O34331 (Putative rRNA methyltransferase YlbH OS=Bacillus subtilis (strain 168) OX=224308 GN=ylbH PE=3 SV=2) HSP 1 Score: 79.3 bits (194), Expect = 8.4e-14 Identity = 53/190 (27.89%), Postives = 91/190 (47.89%), Query Frame = 0
BLAST of CsGy5G027950 vs. ExPASy Swiss-Prot
Match: P57136 (Ribosomal RNA small subunit methyltransferase D OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=rsmD PE=3 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 2.5e-05 Identity = 34/160 (21.25%), Postives = 76/160 (47.50%), Query Frame = 0
BLAST of CsGy5G027950 vs. ExPASy Swiss-Prot
Match: P0ADY0 (Ribosomal RNA small subunit methyltransferase D OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rsmD PE=3 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 2.5e-05 Identity = 41/169 (24.26%), Postives = 77/169 (45.56%), Query Frame = 0
BLAST of CsGy5G027950 vs. ExPASy Swiss-Prot
Match: P0ADX9 (Ribosomal RNA small subunit methyltransferase D OS=Escherichia coli (strain K12) OX=83333 GN=rsmD PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 2.5e-05 Identity = 41/169 (24.26%), Postives = 77/169 (45.56%), Query Frame = 0
BLAST of CsGy5G027950 vs. ExPASy Swiss-Prot
Match: Q9ZD05 (Uncharacterized methylase RP545 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=RP545 PE=4 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 3.6e-04 Identity = 46/229 (20.09%), Postives = 94/229 (41.05%), Query Frame = 0
BLAST of CsGy5G027950 vs. NCBI nr
Match: XP_004148680.1 (uncharacterized protein LOC101209883 [Cucumis sativus] >XP_031741881.1 uncharacterized protein LOC101209883 [Cucumis sativus] >KGN52426.1 hypothetical protein Csa_007850 [Cucumis sativus]) HSP 1 Score: 622 bits (1604), Expect = 1.48e-224 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
BLAST of CsGy5G027950 vs. NCBI nr
Match: XP_008458705.1 (PREDICTED: putative rRNA methyltransferase YlbH [Cucumis melo] >KAA0037420.1 putative rRNA methyltransferase YlbH [Cucumis melo var. makuwa] >TYK00211.1 putative rRNA methyltransferase YlbH [Cucumis melo var. makuwa]) HSP 1 Score: 583 bits (1504), Expect = 2.40e-209 Identity = 297/312 (95.19%), Postives = 303/312 (97.12%), Query Frame = 0
BLAST of CsGy5G027950 vs. NCBI nr
Match: XP_038890433.1 (putative rRNA methyltransferase YlbH [Benincasa hispida]) HSP 1 Score: 570 bits (1468), Expect = 7.92e-204 Identity = 290/314 (92.36%), Postives = 301/314 (95.86%), Query Frame = 0
BLAST of CsGy5G027950 vs. NCBI nr
Match: XP_022133703.1 (uncharacterized protein LOC111006220 [Momordica charantia]) HSP 1 Score: 538 bits (1387), Expect = 2.51e-191 Identity = 276/313 (88.18%), Postives = 291/313 (92.97%), Query Frame = 0
BLAST of CsGy5G027950 vs. NCBI nr
Match: XP_022993558.1 (putative rRNA methyltransferase YlbH isoform X4 [Cucurbita maxima]) HSP 1 Score: 511 bits (1315), Expect = 1.61e-180 Identity = 265/316 (83.86%), Postives = 286/316 (90.51%), Query Frame = 0
BLAST of CsGy5G027950 vs. ExPASy TrEMBL
Match: A0A0A0KX89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633240 PE=4 SV=1) HSP 1 Score: 622 bits (1604), Expect = 7.17e-225 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
BLAST of CsGy5G027950 vs. ExPASy TrEMBL
Match: A0A5D3BK68 (Putative rRNA methyltransferase YlbH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00020 PE=4 SV=1) HSP 1 Score: 583 bits (1504), Expect = 1.16e-209 Identity = 297/312 (95.19%), Postives = 303/312 (97.12%), Query Frame = 0
BLAST of CsGy5G027950 vs. ExPASy TrEMBL
Match: A0A1S3C8K7 (putative rRNA methyltransferase YlbH OS=Cucumis melo OX=3656 GN=LOC103498032 PE=4 SV=1) HSP 1 Score: 583 bits (1504), Expect = 1.16e-209 Identity = 297/312 (95.19%), Postives = 303/312 (97.12%), Query Frame = 0
BLAST of CsGy5G027950 vs. ExPASy TrEMBL
Match: A0A6J1BZW0 (uncharacterized protein LOC111006220 OS=Momordica charantia OX=3673 GN=LOC111006220 PE=4 SV=1) HSP 1 Score: 538 bits (1387), Expect = 1.21e-191 Identity = 276/313 (88.18%), Postives = 291/313 (92.97%), Query Frame = 0
BLAST of CsGy5G027950 vs. ExPASy TrEMBL
Match: A0A6J1K2L6 (putative rRNA methyltransferase YlbH isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111489523 PE=4 SV=1) HSP 1 Score: 511 bits (1315), Expect = 7.79e-181 Identity = 265/316 (83.86%), Postives = 286/316 (90.51%), Query Frame = 0
BLAST of CsGy5G027950 vs. TAIR 10
Match: AT3G28460.1 (methyltransferases ) HSP 1 Score: 368.6 bits (945), Expect = 4.9e-102 Identity = 186/270 (68.89%), Postives = 217/270 (80.37%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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