CsGy5G026380 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G026380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	SKP1-like protein
Location	Gy14Chr5: 30293877 .. 30295077 (-)
RNA-Seq Expression	CsGy5G026380
Synteny	CsGy5G026380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGAAAAGGAATGTGATTTGGGAATTGATCAAAAACCCTAACCCCTATAAATACGGCCATTCATCGAATCAATTCATCAATTCATTGATCCTCAAGCAATTCCCAAATTAATCTCTGTTTCTTCAATTCCATTCTTTGATTGATTATCAATATGAGGATTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTAGCGAAGCAATCCGTGGTGGTTCGTATCTTTCTTGAAGAGGATGATTCAAATAACGATGAAATCACGATTCCGCTTCCGAATATTAGTGGAAGATTGCTGGGGATGGTGATCGAGTGGATTGTGATGCATGTCGAGGAAAAATTAGCGGAGGAAGCTCTCCATGCTTGGAAAACTAAGTTCTTGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCGAATTACCTGGAAGTTACCGATTTATTCCATGCAACTTGCCAATGTGTCGCTGATAAGATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATAACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCTGGTAGCGGTAGCGGTAGCACTAGCGGCAGTAAATAAATTTTTTATTTCGCTTAACTTTTAGTTTATGTTTTCGAGGAAAACACAAGATGGGTGTCAATAGAATGTATTAGAATATTATAGATTCATCATGGTTTACTGTTTTCAAATTTTTTAGGCAATCCATGGGTTTTTCTTTTCAATTGTTGCTGTTCTTGCTGGAAAAATCACTGATATGTCGCATTATTATTGGTTTTTATGTGGAAACATTTCTTTATTTGAAGATATTCTACATCCATCTTTTCTAAACTTAATCATAATAGTATATCAAAGTGTTGATCTTGAATGAATCTGTTCTTGGATTTGATGGTTCTTGATGATTGGATAGAATGTGATGATAATAGAGATTGATTTTTTAAAAATATAAACAAACACGTGGAAAACTATTGATCTTAAGTTAGCTATTTAGAACTTTTTTATGTTTGTGACATAGCAGACACCCCCTTGGGAATGATGGGAATAAATTATTATGAACTTTGCTTTTAGAACTATTCTAAAAGGGTTTAAAATATTGGAGTCAAACAATGGATGATTGTTCCCTCATGTGAAGATGCC

mRNA sequence

CCGAAAAGGAATGTGATTTGGGAATTGATCAAAAACCCTAACCCCTATAAATACGGCCATTCATCGAATCAATTCATCAATTCATTGATCCTCAAGCAATTCCCAAATTAATCTCTGTTTCTTCAATTCCATTCTTTGATTGATTATCAATATGAGGATTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTAGCGAAGCAATCCGTGGTGGTTCGTATCTTTCTTGAAGAGGATGATTCAAATAACGATGAAATCACGATTCCGCTTCCGAATATTAGTGGAAGATTGCTGGGGATGGTGATCGAGTGGATTGTGATGCATGTCGAGGAAAAATTAGCGGAGGAAGCTCTCCATGCTTGGAAAACTAAGTTCTTGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCGAATTACCTGGAAGTTACCGATTTATTCCATGCAACTTGCCAATGTGTCGCTGATAAGATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATAACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCTGGTAGCGGTAGCGGTAGCACTAGCGGCAGTAAATAAATTTTTTATTTCGCTTAACTTTTAGTTTATGTTTTCGAGGAAAACACAAGATGGGTGTCAATAGAATGTATTAGAATATTATAGATTCATCATGGTTTACTGTTTTCAAATTTTTTAGGCAATCCATGGGTTTTTCTTTTCAATTGTTGCTGTTCTTGCTGGAAAAATCACTGATATGTCGCATTATTATTGGTTTTTATGTGGAAACATTTCTTTATTTGAAGATATTCTACATCCATCTTTTCTAAACTTAATCATAATAGTATATCAAAGTGTTGATCTTGAATGAATCTGTTCTTGGATTTGATGGTTCTTGATGATTGGATAGAATGTGATGATAATAGAGATTGATTTTTTAAAAATATAAACAAACACGTGGAAAACTATTGATCTTAAGTTAGCTATTTAGAACTTTTTTATGTTTGTGACATAGCAGACACCCCCTTGGGAATGATGGGAATAAATTATTATGAACTTTGCTTTTAGAACTATTCTAAAAGGGTTTAAAATATTGGAGTCAAACAATGGATGATTGTTCCCTCATGTGAAGATGCC

Coding sequence (CDS)

ATGAGGATTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTAGCGAAGCAATCCGTGGTGGTTCGTATCTTTCTTGAAGAGGATGATTCAAATAACGATGAAATCACGATTCCGCTTCCGAATATTAGTGGAAGATTGCTGGGGATGGTGATCGAGTGGATTGTGATGCATGTCGAGGAAAAATTAGCGGAGGAAGCTCTCCATGCTTGGAAAACTAAGTTCTTGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCGAATTACCTGGAAGTTACCGATTTATTCCATGCAACTTGCCAATGTGTCGCTGATAAGATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATAACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCTGGTAGCGGTAGCGGTAGCACTAGCGGCAGTAAATAA

Protein sequence

MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK*

Homology

[Close]

BLAST of CsGy5G026380 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-30
Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVE 65
           L+SS+ E F+V E VA +S  +   +E+D  +N    +PLPN++ ++L  VIE+   HVE
Sbjct: 8   LKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG---VPLPNVTSKILAKVIEYCKRHVE 67

Query: 66  -----------EKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVAD 125
                         +++ L AW   F++ +D   LFELI+AANYL + +L   TCQ VAD
Sbjct: 68  AAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVAD 127

Query: 126 KISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
            I GK+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 128 MIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CsGy5G026380 vs. ExPASy Swiss-Prot
Match: Q9WTX5 (S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-30
Identity = 70/163 (42.94%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEE--DDSNNDEITIPLPNISGRLLGMVIE 60
           M  + L+SS+ EIF+V  E+AKQSV ++  LE+   D   D+  +PLPN++  +L  VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVMHVEE----------KLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHAT 120
           W   H ++          +   + +  W  +FL+ +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           C+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CsGy5G026380 vs. ExPASy Swiss-Prot
Match: Q6PEC4 (S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-30
Identity = 70/163 (42.94%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEE--DDSNNDEITIPLPNISGRLLGMVIE 60
           M  + L+SS+ EIF+V  E+AKQSV ++  LE+   D   D+  +PLPN++  +L  VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVMHVEE----------KLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHAT 120
           W   H ++          +   + +  W  +FL+ +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           C+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CsGy5G026380 vs. ExPASy Swiss-Prot
Match: Q3ZCF3 (S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.7e-30
Identity = 70/163 (42.94%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEE--DDSNNDEITIPLPNISGRLLGMVIE 60
           M  + L+SS+ EIF+V  E+AKQSV ++  LE+   D   D+  +PLPN++  +L  VI+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVMHVEE----------KLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHAT 120
           W   H ++          +   + +  W  +FL+ +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           C+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CsGy5G026380 vs. ExPASy Swiss-Prot
Match: P63209 (S-phase kinase-associated protein 1 OS=Cavia porcellus OX=10141 GN=SKP1 PE=2 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 5.7e-30
Identity = 70/163 (42.94%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEE--DDSNNDEITIPLPNISGRLLGMVIE 60
           M  + L+SS+ EIF+V  E+AKQSV ++  LE+   D   D+  +PLPN++  +L  VI+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVMHVEE----------KLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHAT 120
           W   H ++          +   + +  W  +FL+ +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           C+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CsGy5G026380 vs. NCBI nr
Match: XP_004142439.1 (SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 318 bits (816), Expect = 1.85e-109
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60
           MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]

BLAST of CsGy5G026380 vs. NCBI nr
Match: KAE8648853.1 (hypothetical protein Csa_008932 [Cucumis sativus])

HSP 1 Score: 308 bits (790), Expect = 5.02e-104
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVE 65
           +RSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVE
Sbjct: 104 MRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVE 163

Query: 66  EKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR 125
           EKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR
Sbjct: 164 EKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR 223

Query: 126 KIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164
           KIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK
Sbjct: 224 KIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 262

[Close]

BLAST of CsGy5G026380 vs. NCBI nr
Match: XP_008446842.1 (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 296 bits (757), Expect = 1.71e-100
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS  TSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS--TSGSK 162

[Close]

BLAST of CsGy5G026380 vs. NCBI nr
Match: KAA0034704.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 293 bits (749), Expect = 9.00e-98
Identity = 149/157 (94.90%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of CsGy5G026380 vs. NCBI nr
Match: TYK09255.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 293 bits (749), Expect = 9.62e-98
Identity = 149/157 (94.90%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of CsGy5G026380 vs. ExPASy TrEMBL
Match: A0A0A0KRJ8 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 318 bits (816), Expect = 8.96e-110
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60
           MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]

BLAST of CsGy5G026380 vs. ExPASy TrEMBL
Match: A0A1S3BGP6 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1)

HSP 1 Score: 296 bits (757), Expect = 8.29e-101
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS  TSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS--TSGSK 162

[Close]

BLAST of CsGy5G026380 vs. ExPASy TrEMBL
Match: A0A5A7SU15 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007240 PE=3 SV=1)

HSP 1 Score: 293 bits (749), Expect = 4.36e-98
Identity = 149/157 (94.90%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of CsGy5G026380 vs. ExPASy TrEMBL
Match: A0A5D3CCN6 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002490 PE=3 SV=1)

HSP 1 Score: 293 bits (749), Expect = 4.66e-98
Identity = 149/157 (94.90%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of CsGy5G026380 vs. ExPASy TrEMBL
Match: A0A6J1JGP3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486777 PE=3 SV=1)

HSP 1 Score: 200 bits (508), Expect = 5.57e-63
Identity = 96/153 (62.75%), Postives = 123/153 (80.39%), Query Frame = 0


Query: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60
           MR   L+SS+N+IFKVSEE+A QS V++ FLE+  S++DEI IPLPN+ GR+L M+IEW+
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWM 60

Query: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           V HV+E+L +E +  W+ KF+ DL++++  EL+MAANYLEV  L H TCQ +AD ISGKS
Sbjct: 61  VKHVDEELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 153
           PEEIR+I NIT+DFTPEEEAEIRRQN WV  PS
Sbjct: 121 PEEIRRILNITSDFTPEEEAEIRRQNGWVLNPS 153

[Close]

BLAST of CsGy5G026380 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 132.5 bits (332), Expect = 3.1e-31
Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVE 65
           L+SS+ E F+V E VA +S  +   +E+D  +N    +PLPN++ ++L  VIE+   HVE
Sbjct: 8   LKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG---VPLPNVTSKILAKVIEYCKRHVE 67

Query: 66  -----------EKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVAD 125
                         +++ L AW   F++ +D   LFELI+AANYL + +L   TCQ VAD
Sbjct: 68  AAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVAD 127

Query: 126 KISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
            I GK+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 128 MIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CsGy5G026380 vs. TAIR 10
Match: AT1G10230.1 (SKP1-like 18 )

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-30
Identity = 68/152 (44.74%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHV- 65
           L SS+ E F++ E VA++ +++ + + ED+   +   IPL N++G +L  +IE+  MHV 
Sbjct: 33  LTSSDGESFEIDEAVARKFLII-VHMMEDNCAGE--AIPLENVTGDILSKIIEYAKMHVN 92

Query: 66  ------EEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 125
                 E++ A++ L +W  KF+E LDL+ +F++I+AANYL    L     Q VAD I  
Sbjct: 93  EPSEEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKD 152

Query: 126 KSPEEIRKIFNITNDFTPEEEAEIRRQNAWVF 151
           K+PEE+R+IFNI NDFTPEEE EIR++NAW F
Sbjct: 153 KTPEEVREIFNIENDFTPEEEEEIRKENAWTF 181

[Close]

BLAST of CsGy5G026380 vs. TAIR 10
Match: AT3G25650.1 (SKP1-like 15 )

HSP 1 Score: 129.0 bits (323), Expect = 3.4e-30
Identity = 70/163 (42.94%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVE 65
           L SS+ E F+V E VA++  +V+  LE+D   N+   IPL N++G +L +V+E+   HV+
Sbjct: 8   LTSSDGESFQVEEVVARKLQIVKHLLEDDCVINE---IPLQNVTGNILSIVLEYCKKHVD 67

Query: 66  EKLAEEA----------------LHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATC 125
           + + ++A                L AW  +F++++D++ +F+LI+AANYL V  L   TC
Sbjct: 68  DVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTC 127

Query: 126 QCVADKISGKSPEEIRKIFNITNDFTPEEEAE-IRRQNAWVFE 152
           Q VAD I  K+PEE+R++FNI NDFT EEE E IR++NAW FE
Sbjct: 128 QTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167

[Close]

BLAST of CsGy5G026380 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 129.0 bits (323), Expect = 3.4e-30
Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 2   RIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI- 61
           +++ L SS+ + F+V E VA QS  +   +E+D   +    IPL N+  ++L  VIE+  
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG---IPLANVESKILVKVIEYCK 63

Query: 62  VMHVEE--KLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121
             HV+E   ++EE L+ W  KF+ DL+   +FELI+AANYL +  LF  TCQ VAD I G
Sbjct: 64  KYHVDEANPISEEDLNKWDEKFM-DLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKG 123

Query: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           K+PEEIR  FNI NDFTPEEE  +R++N W FE
Sbjct: 124 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CsGy5G026380 vs. TAIR 10
Match: AT2G03170.1 (SKP1-like 14 )

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-29
Identity = 63/146 (43.15%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVE 65
           L SS+ E F+V E VA++  +V   +E+D    +   +PL N++G++L +V+E+   HV 
Sbjct: 8   LSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTE---VPLQNVTGKILSIVVEYCKKHVV 67

Query: 66  EKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR 125
           ++ ++E    W  +F++  D   +F+L++AANYL +  L   + Q VAD+I  K+PEEIR
Sbjct: 68  DEESDE-FKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIR 127

Query: 126 KIFNITNDFTPEEEAEIRRQNAWVFE 152
           +IFNI NDFTPEEEA +R++NAW FE
Sbjct: 128 EIFNIENDFTPEEEAAVRKENAWAFE 149

The following BLAST results are available for this feature:

BLAST of CsGy5G026380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	4.4e-30	45.86	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9WTX5	4.4e-30	42.94	S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3	[more]
Q6PEC4	4.4e-30	42.94	S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 S...	[more]
Q3ZCF3	5.7e-30	42.94	S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=2 SV=1	[more]
P63209	5.7e-30	42.94	S-phase kinase-associated protein 1 OS=Cavia porcellus OX=10141 GN=SKP1 PE=2 SV=...	[more]

BLAST of CsGy5G026380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142439.1	1.85e-109	100.00	SKP1-like protein 14 [Cucumis sativus]	[more]
KAE8648853.1	5.02e-104	99.37	hypothetical protein Csa_008932 [Cucumis sativus]	[more]
XP_008446842.1	1.71e-100	93.90	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]
KAA0034704.1	9.00e-98	94.90	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
TYK09255.1	9.62e-98	94.90	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy5G026380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRJ8	8.96e-110	100.00	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1	[more]
A0A1S3BGP6	8.29e-101	93.90	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1	[more]
A0A5A7SU15	4.36e-98	94.90	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G...	[more]
A0A5D3CCN6	4.66e-98	94.90	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]
A0A6J1JGP3	5.57e-63	62.75	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486777 PE=3 SV=1	[more]

BLAST of CsGy5G026380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	3.1e-31	45.86	S phase kinase-associated protein 1	[more]
AT1G10230.1	2.0e-30	44.74	SKP1-like 18	[more]
AT3G25650.1	3.4e-30	42.94	SKP1-like 15	[more]
AT4G34470.1	3.4e-30	47.06	SKP1-like 12	[more]
AT2G03170.1	1.0e-29	43.15	SKP1-like 14	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 1..101 e-value: 2.6E-22 score: 90.1
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 103..149 e-value: 2.3E-24 score: 85.2
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..152 e-value: 1.0E-53 score: 183.8
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 3..67
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 4..64 e-value: 1.1E-12 score: 47.9
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..152 e-value: 3.8E-50 score: 167.8
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 2..151
None	No IPR available	PANTHER	PTHR11165:SF110	SCF UBIQUITIN LIGASE, SKP1 COMPONENT	coord: 2..151
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 73..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G026380.2	CsGy5G026380.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity