CsGy5G013447 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G013447
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRibosomal protein S1
LocationGy14Chr5: 17383117 .. 17383326 (-)
RNA-Seq ExpressionCsGy5G013447
SyntenyCsGy5G013447
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTGGTGGATGCAGGACCTAGGACCCCCATCATTTGTATGCAAGATGAGCCTACAGAAGTTCCAATCAATCGAGTCGCCAGGTTTGAGACCCACTCTGCGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTTCTCAAAGAGCAAATTTTGGAGAGATTCTTCATCGATCTAGTGACCGGCAAATCACTTCTCAAAGAGTGA

mRNA sequence

ATGTTCTTGGTGGATGCAGGACCTAGGACCCCCATCATTTGTATGCAAGATGAGCCTACAGAAGTTCCAATCAATCGAGTCGCCAGGTTTGAGACCCACTCTGCGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTTCTCAAAGAGCAAATTTTGGAGAGATTCTTCATCGATCTAGTGACCGGCAAATCACTTCTCAAAGAGTGA

Coding sequence (CDS)

ATGTTCTTGGTGGATGCAGGACCTAGGACCCCCATCATTTGTATGCAAGATGAGCCTACAGAAGTTCCAATCAATCGAGTCGCCAGGTTTGAGACCCACTCTGCGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTTCTCAAAGAGCAAATTTTGGAGAGATTCTTCATCGATCTAGTGACCGGCAAATCACTTCTCAAAGAGTGA

Protein sequence

MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFIDLVTGKSLLKE*
Homology
BLAST of CsGy5G013447 vs. NCBI nr
Match: KAE8648347.1 (hypothetical protein Csa_023137 [Cucumis sativus])

HSP 1 Score: 137 bits (346), Expect = 8.57e-41
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFIDL 60
          MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFIDL
Sbjct: 1  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFIDL 60

Query: 61 VTGKSLLKE 69
          VTGKSLLKE
Sbjct: 61 VTGKSLLKE 69

BLAST of CsGy5G013447 vs. NCBI nr
Match: YP_004849347.1 (ribosomal protein S1 [Cucumis sativus] >ADZ10774.1 ribosomal protein S1 [Cucumis sativus])

HSP 1 Score: 127 bits (319), Expect = 2.27e-35
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0

Query: 1  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFIDL 60
          MFLVDAGP TPIICMQDEPT VPINR ARFETHSAVGSLDLVAGESLLKEQILERFFIDL
Sbjct: 1  MFLVDAGPGTPIICMQDEPTGVPINRAARFETHSAVGSLDLVAGESLLKEQILERFFIDL 60

Query: 61 VTGKSLLKE 69
          V G+SLLKE
Sbjct: 61 VAGESLLKE 69

BLAST of CsGy5G013447 vs. NCBI nr
Match: KAE8648273.1 (hypothetical protein Csa_017791 [Cucumis sativus])

HSP 1 Score: 114 bits (286), Expect = 7.82e-31
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 1   MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFIDL 60
           MF+VDAGP T IICMQDEPT VPINR  RF THSAVGSLDLVAGESLLK++ILERFFIDL
Sbjct: 60  MFMVDAGPGTLIICMQDEPTGVPINRADRFVTHSAVGSLDLVAGESLLKKKILERFFIDL 119

Query: 61  VTGKSLLKE 69
           V G+SLLKE
Sbjct: 120 VAGESLLKE 128

BLAST of CsGy5G013447 vs. NCBI nr
Match: AEN56125.1 (ribosomal protein S1 [Cucumis melo subsp. melo] >AZP40294.1 ribosomal protein S1 [Cucumis melo var. momordica] >KAA0062525.1 ribosomal protein S1 [Cucumis melo var. makuwa] >TYK19210.1 ribosomal protein S1 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 5.56e-30
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 1  MFLVDAGPR-TPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFID 60
          MFLVDAGP  TPIICMQDEPT VPINR AR ETH AVGSLDLVAGESL+KE ILERFFID
Sbjct: 1  MFLVDAGPGGTPIICMQDEPTGVPINRAARVETHVAVGSLDLVAGESLIKEPILERFFID 60

Query: 61 LVTGKSLLKE 69
          LV G+SL+KE
Sbjct: 61 LVAGESLIKE 70

BLAST of CsGy5G013447 vs. NCBI nr
Match: CAB4289975.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 107 bits (268), Expect = 3.03e-28
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0

Query: 1  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFIDL 60
          MFLVDAGP TP ICMQDEPT VPINR ARFE  + VGSLD+VAGESL+KEQILERFFID+
Sbjct: 1  MFLVDAGPGTPRICMQDEPTGVPINRAARFE--NKVGSLDVVAGESLIKEQILERFFIDV 60

Query: 61 VTGKSLLKE 69
          V G+SL+KE
Sbjct: 61 VAGESLIKE 67

BLAST of CsGy5G013447 vs. ExPASy TrEMBL
Match: G3EIZ9 (Ribosomal protein S1 OS=Cucumis sativus OX=3659 GN=rps1 PE=4 SV=1)

HSP 1 Score: 127 bits (319), Expect = 1.10e-35
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0

Query: 1  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFIDL 60
          MFLVDAGP TPIICMQDEPT VPINR ARFETHSAVGSLDLVAGESLLKEQILERFFIDL
Sbjct: 1  MFLVDAGPGTPIICMQDEPTGVPINRAARFETHSAVGSLDLVAGESLLKEQILERFFIDL 60

Query: 61 VTGKSLLKE 69
          V G+SLLKE
Sbjct: 61 VAGESLLKE 69

BLAST of CsGy5G013447 vs. ExPASy TrEMBL
Match: A0A5A7V9I0 (Ribosomal protein S1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold79763G00010 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 2.69e-30
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 1  MFLVDAGPR-TPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFID 60
          MFLVDAGP  TPIICMQDEPT VPINR AR ETH AVGSLDLVAGESL+KE ILERFFID
Sbjct: 1  MFLVDAGPGGTPIICMQDEPTGVPINRAARVETHVAVGSLDLVAGESLIKEPILERFFID 60

Query: 61 LVTGKSLLKE 69
          LV G+SL+KE
Sbjct: 61 LVAGESLIKE 70

BLAST of CsGy5G013447 vs. ExPASy TrEMBL
Match: G3EU09 (Ribosomal protein S1 OS=Cucumis melo subsp. melo OX=412675 GN=rps1 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 2.69e-30
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 1  MFLVDAGPR-TPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFID 60
          MFLVDAGP  TPIICMQDEPT VPINR AR ETH AVGSLDLVAGESL+KE ILERFFID
Sbjct: 1  MFLVDAGPGGTPIICMQDEPTGVPINRAARVETHVAVGSLDLVAGESLIKEPILERFFID 60

Query: 61 LVTGKSLLKE 69
          LV G+SL+KE
Sbjct: 61 LVAGESLIKE 70

BLAST of CsGy5G013447 vs. ExPASy TrEMBL
Match: A0A3S9JIJ3 (Ribosomal protein S1 OS=Cucumis melo var. momordica OX=2034244 GN=rps1 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 2.69e-30
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 1  MFLVDAGPR-TPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFID 60
          MFLVDAGP  TPIICMQDEPT VPINR AR ETH AVGSLDLVAGESL+KE ILERFFID
Sbjct: 1  MFLVDAGPGGTPIICMQDEPTGVPINRAARVETHVAVGSLDLVAGESLIKEPILERFFID 60

Query: 61 LVTGKSLLKE 69
          LV G+SL+KE
Sbjct: 61 LVAGESLIKE 70

BLAST of CsGy5G013447 vs. ExPASy TrEMBL
Match: A0A6J5VRJ9 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49750 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 1.46e-28
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0

Query: 1  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKEQILERFFIDL 60
          MFLVDAGP TP ICMQDEPT VPINR ARFE  + VGSLD+VAGESL+KEQILERFFID+
Sbjct: 1  MFLVDAGPGTPRICMQDEPTGVPINRAARFE--NKVGSLDVVAGESLIKEQILERFFIDV 60

Query: 61 VTGKSLLKE 69
          V G+SL+KE
Sbjct: 61 VAGESLIKE 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8648347.18.57e-41100.00hypothetical protein Csa_023137 [Cucumis sativus][more]
YP_004849347.12.27e-3592.75ribosomal protein S1 [Cucumis sativus] >ADZ10774.1 ribosomal protein S1 [Cucumis... [more]
KAE8648273.17.82e-3184.06hypothetical protein Csa_017791 [Cucumis sativus][more]
AEN56125.15.56e-3084.29ribosomal protein S1 [Cucumis melo subsp. melo] >AZP40294.1 ribosomal protein S1... [more]
CAB4289975.13.03e-2879.71unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
G3EIZ91.10e-3592.75Ribosomal protein S1 OS=Cucumis sativus OX=3659 GN=rps1 PE=4 SV=1[more]
A0A5A7V9I02.69e-3084.29Ribosomal protein S1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
G3EU092.69e-3084.29Ribosomal protein S1 OS=Cucumis melo subsp. melo OX=412675 GN=rps1 PE=4 SV=1[more]
A0A3S9JIJ32.69e-3084.29Ribosomal protein S1 OS=Cucumis melo var. momordica OX=2034244 GN=rps1 PE=4 SV=1[more]
A0A6J5VRJ91.46e-2879.71Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49750 PE=4 S... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G013447.1CsGy5G013447.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome