CsGy4G012288 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G012288
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	60S ribosomal protein L39
Location	Gy14Chr4: 14408238 .. 14409264 (+)
RNA-Seq Expression	CsGy4G012288
Synteny	CsGy4G012288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCCGTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGGTGCTTTCGATTCTTACCTTCAATTGTCATTTACCTTGATTTTGTTAAGTTTCATAAACTTGAATTTTCTTAACGATCTACATTTGTATTTCCGCAACTACTGAAATTTAGTTTATGGGATACTTTTGTTTAATTATTGCTACACTCAAGATTGAAGCACTTTGGAATAGAGTGAATTTACCATAAAAAATACTAATAGATGACTTTTATTTCAAAAGATAAGATATGATCTTTAAAATTTTAACATTTCTAGTCCATTTGAAAAACATAGGTTCTCGAAAGTGCAAATGAATTTTGGAAAAATTCATGAACAAATTGTAGAGATATGTTGTAAGGGGTACATTTGGAAGATTTAGGATATTTTACAAGTACATGGCTGTGGAATACAAGATCAGACTATTGCAAACTATTATTCTTATAGAGGAAATAGAAAGAAGGTGAGAAATTCATCGCTCTACATTAGAAAGTACATTTGGAGGATTTAGGATATTTTACAAGTAGATGGCTGTGGAATGCATGATCAGATTATTGCATATTATTATTCTTACAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCACCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGGTTAATTCACGGATCAGTACTCTACTGATTCCTATGTCAAAGTCCTGATGAAAATTGAGTGTGCTGACTTCTTGAAACATTGCAATTTTGTGACACTAAAAACTTGTTAGTTGTTATAGTTAAAACATATAAGGTATATATTGACTACTGTATCAAAGTGTTCACACTTTGTTTCAGTAAATATAATCTTTTATGA

mRNA sequence

ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCCGTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCACCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGTAAATATAATCTTTTATGA

Coding sequence (CDS)

ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCCGTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCACCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGTAAATATAATCTTTTATGA

Protein sequence

MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHHIKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL*

Homology

[Close]

BLAST of CsGy4G012288 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]

BLAST of CsGy4G012288 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]

BLAST of CsGy4G012288 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]

BLAST of CsGy4G012288 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-07
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTF++KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]

BLAST of CsGy4G012288 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHK+F +KKKL KK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsGy4G012288 vs. NCBI nr
Match: KAE8649466.1 (hypothetical protein Csa_018885 [Cucumis sativus])

HSP 1 Score: 208 bits (530), Expect = 6.12e-68
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHH 60
          MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHH
Sbjct: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHH 60

Query: 61 IKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL 99
          IKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL
Sbjct: 61 IKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL 99

[Close]

BLAST of CsGy4G012288 vs. NCBI nr
Match: XP_011657167.1 (60S ribosomal protein L39-like [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.88e-12
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID 36
          MLSHKTFRMKKKL KKKR NRP PHWIRLR DNTID
Sbjct: 1  MLSHKTFRMKKKLLKKKRQNRPTPHWIRLRTDNTID 36

[Close]

BLAST of CsGy4G012288 vs. NCBI nr
Match: XP_011657256.1 (60S ribosomal protein L39-like [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 6.19e-11
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID 36
          MLSHKTFRMKKKLAKKKR NRP  +WIRLR DNTID
Sbjct: 1  MLSHKTFRMKKKLAKKKRQNRPTSNWIRLRTDNTID 36

[Close]

BLAST of CsGy4G012288 vs. NCBI nr
Match: XP_011656152.1 (60S ribosomal protein L39-1-like [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.17e-10
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNT 34
          MLSHKTF MKKK AKKKR NRP PHWIRLRIDNT
Sbjct: 1  MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT 34

[Close]

BLAST of CsGy4G012288 vs. NCBI nr
Match: KAE9466617.1 (hypothetical protein C3L33_01460, partial [Rhododendron williamsianum])

HSP 1 Score: 59.7 bits (143), Expect = 2.79e-09
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 3  SHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID------PLLVSHKARVLR 48
          SHKTF +KKKLAKK R NRP PHWIR+R DNTI         L  H+ARVL+
Sbjct: 11 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRWVQCQAQALAPHQARVLK 62

[Close]

BLAST of CsGy4G012288 vs. ExPASy TrEMBL
Match: A0A6A4MLJ7 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_01460 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.35e-09
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 3  SHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID------PLLVSHKARVLR 48
          SHKTF +KKKLAKK R NRP PHWIR+R DNTI         L  H+ARVL+
Sbjct: 11 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRWVQCQAQALAPHQARVLK 62

[Close]

BLAST of CsGy4G012288 vs. ExPASy TrEMBL
Match: A0A6J1HZ80 (60S ribosomal protein L39 OS=Cucurbita maxima OX=3661 GN=LOC111467947 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.46e-09
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 35
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsGy4G012288 vs. ExPASy TrEMBL
Match: A0A0A0LYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568530 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.46e-09
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 35
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsGy4G012288 vs. ExPASy TrEMBL
Match: A0A1S3BCZ7 (60S ribosomal protein L39 OS=Cucumis melo OX=3656 GN=LOC103488337 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.46e-09
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 35
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsGy4G012288 vs. ExPASy TrEMBL
Match: A0A6J1C1Z7 (60S ribosomal protein L39 OS=Momordica charantia OX=3673 GN=LOC111007536 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.46e-09
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 35
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsGy4G012288 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 54.3 bits (129), Expect = 6.5e-08
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHK+F +KKKL KK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTI 35

[Close]

BLAST of CsGy4G012288 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHK+F +KKKL KK R NRP P+WIRLR DN I
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKI 35

[Close]

BLAST of CsGy4G012288 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-05
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 9  MKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          +KKKL KK R NRP PHWIRLR DNTI
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTI 28

The following BLAST results are available for this feature:

BLAST of CsGy4G012288 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6KAJ8	1.9e-07	77.14	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
P51426	1.9e-07	77.14	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
P51425	1.9e-07	77.14	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]
Q5SMI4	5.4e-07	74.29	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
P51424	9.2e-07	74.29	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]

BLAST of CsGy4G012288 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649466.1	6.12e-68	100.00	hypothetical protein Csa_018885 [Cucumis sativus]	[more]
XP_011657167.1	1.88e-12	88.89	60S ribosomal protein L39-like [Cucumis sativus]	[more]
XP_011657256.1	6.19e-11	86.11	60S ribosomal protein L39-like [Cucumis sativus]	[more]
XP_011656152.1	1.17e-10	88.24	60S ribosomal protein L39-1-like [Cucumis sativus]	[more]
KAE9466617.1	2.79e-09	61.54	hypothetical protein C3L33_01460, partial [Rhododendron williamsianum]	[more]

BLAST of CsGy4G012288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A4MLJ7	1.35e-09	61.54	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]
A0A6J1HZ80	1.46e-09	82.86	60S ribosomal protein L39 OS=Cucurbita maxima OX=3661 GN=LOC111467947 PE=3 SV=1	[more]
A0A0A0LYE1	1.46e-09	82.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568530 PE=3 SV=1	[more]
A0A1S3BCZ7	1.46e-09	82.86	60S ribosomal protein L39 OS=Cucumis melo OX=3656 GN=LOC103488337 PE=3 SV=1	[more]
A0A6J1C1Z7	1.46e-09	82.86	60S ribosomal protein L39 OS=Momordica charantia OX=3673 GN=LOC111007536 PE=3 SV...	[more]

BLAST of CsGy4G012288 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31985.1	6.5e-08	74.29	Ribosomal protein L39 family protein	[more]
AT3G02190.1	2.1e-06	68.57	Ribosomal protein L39 family protein	[more]
AT2G25210.1	3.0e-05	77.78	Ribosomal protein L39 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	1.10.1620.10	Ribosomal protein L39e	coord: 1..60 e-value: 1.8E-12 score: 49.2
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	48662	Ribosomal protein L39e	coord: 3..35
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 9..35 e-value: 2.9E-6 score: 26.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR19970:SF31	SUBFAMILY NOT NAMED	coord: 1..35
None	No IPR available	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G012288.1	CsGy4G012288.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome