CsGy3G042730 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G042730
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	pre-rRNA-processing protein TSR2
Location	Gy14Chr3: 39731412 .. 39734189 (-)
RNA-Seq Expression	CsGy3G042730
Synteny	CsGy3G042730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTGGGGGAAACCGTCTTCTCCCAGCTCATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCCGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTCGAACTATTATGCGCCGAAATTTTCACATGGTTTACTCAGAACAAAGGTAATTTTACTCCCTTCCACTTGGATAATCTTGGTTCCTATCTTCGTGCATTGTTTCTCTTTCAGTCTTTCTGTAGATTGACCAGTTTCTCGGATTCAGTAGTGTTTTATTTTGCAAGCAATTGAGTATTTCTTTGTTGTAACTCTTTGGAGAAGTAGTTTATGTTAGATATTATATTAAATTTAACTTCTTCTACCAGCTTAACCTTTTGAGATGAATTGGTGTTTTAAAATGGTACATGATCAGGTGGTACAGGGAGGTTCTGTTCAGCCCCCTAAAATGATATTCTCTTCATTTATTATTGATTTCCTTTTGTTGGGTCTAAGCGAAGGGAAGTGTTAGCTCAACCTTTTGAGTTGAATTGTTGATTTTAGAGTTTTTGTAAACATTGGAATGGGAATTTATTAAATGGCTAGATAAGTGTTTAGATAATTTCTCTGAGGCGTGTGCCGAGACATGACTCCCTTTATGAAGGTGCCTGAAATGCTGCTCTTCAACTCTGTTTCTACTAATTTTTAAATAAGAATTTATAACTTTTAAGAAAGAAACTGATGAATGTTCTTAAAAAGCATTTATTTTTTCTGAAAGAACAGCTCCATTTATTTGAACTTGTTATCATTTTATTATTTGCAGTTATATTTTCTTCATATATATATAATGAAGTATTTATATTTTCCGCCTAACATGCTCTTTTTTGGCTCCTCACACTTAAGCCTCAAAGGGCTATGGCTGCACCTCAAGTTTTGAAGAAATATAGGTTCTAGCTTGTATTTTGTCCTTGATATTCCCTGGTCAGCTAATGCTTTAAATCTCTTCCTAAAAGAAATCCAGATACTCTGAATTATTTTTTACTTCCCTGGTCAGCTAAGCGTTTAACCCTAAAAGAAATCCAGCTAATGCTTTAATTCTCTTCCTAAAAGATGTCCTTGATATTCCCTGGTCAGCTAATGATTGTTGATTTATAGTAGAAGTAGAACTTAGTATTTTGTGAGTCTGACATATTTAGGATTTTGTTATCTTGATCTAACAGATGTATAATTTTTATCTTGCAGAGCAACTATATATTGATGATTTAGAAATAATTCTTGATGAAGCTATGCTTTCATTGAGTACACAGGTTGACGATGGCAGCATTGAGGAGGTATAGTTTATACCCCTCTCAGTCCTTTTCAGTCTTCGGGGAATGCTCTCTGTCTCATAACTGGTTTTTTTTCTTCTTTTTTTTTTTTGTTGTTTCACATGACGAAATAGCCCGCTGTTACATAAGAATAAGTTAACACAAATATTTGTCTGAGATACTATTGAAAATTTTTGTGAGCTGCTATGACTAACTACTGCTGATGGATGGTTTTTTCCTACCCAAATGAACTCTGGATGGTTCCCTTCCCAACGTGACTTGTGAAAATGGAGGCAGAAATATCGTTAAAATTCTACTTCCAACCCAACTCTTAGTCTCATGGCATGATGCTTTTGGTTGGAATAGCTTGAGATACTATCAAAAACTTACCAATACTATCAAAATTTTACCTATTTATTGTTATGGTTGTGGCCTTCGAAGATATTGCTTGGAAGACAGTGGTGATTGTATAAATACCTTCCTAGTAGAACAGAACCCTATGTAGTTCGTCAATTTTCCATCTAATAACCTCTTCCATCTAAGCTAAAAGTGAATTTCTTTTCTTTGTAGTCATATTCAATCTTCTGTAGGAGGTATTGAGGTAACTGTAAAATAATCATAATTTCTAATAGATTTGTCCAGTAACATTTAGTACCAGTTCCATATTCTCCTTTTTGCTCTTTTCCTCTTATATTAGAATGCTTGGTTGAAGTAGAAGAATGAGATCCTGAATTGAAACAGATGGAGAAAATGAGGATGGGTGGGAGTATCCATGGAGTGAGATCATGATGTTTCATCTTCTATTTAACATCCACTCTGAAGAGTGAAACGTGTTATCATCTTCTAGCCTCCTTCAAGAATTGATTATTTACTCTTGTTAACAGATTTTTTGTTGCTTGTGTTTCTTCTTTAATAACGCAGGTAGCTGAAAAATTGATTATCATGCATGAGGAATGTGTAGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAATCCCCTCGTCCTCAAGTTGCCCATGCTCACGTTAATCAGGTAGCTCAATTCTTTCATAGATCCACTTTGTTGAAAAGGACCTTTGTGTTCAATAGTATGATTTTGAGAGTACAGATCAGCGTTGTTGTTTTTTATTCCCTTACTACTGCCCACTTTTGCAGTTTCCCGCATCAGCTTATTATGGATCATGAATTGCATATTTTTGACAATGTCATTCATACTACAAACACAAACATTTGCTTGCTATATATAATATCTTCTAATCTTGACATTGATGAATTTTAAGGCTGAGAGTGATGACGATGACGACGACGACGTAGAAGAAGATGTCAATAGAAATGATATGATGGTGGATGCCGTTCAACCAGCGCAATCCAGGCCTGCCAATCCTCAGCTCAATCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAATAGGGGTACAAGAAATTAG

mRNA sequence

ATGGAAGGTGGGGGAAACCGTCTTCTCCCAGCTCATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCCGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTCGAACTATTATGCGCCGAAATTTTCACATGGTTTACTCAGAACAAAGAGCAACTATATATTGATGATTTAGAAATAATTCTTGATGAAGCTATGCTTTCATTGAGTACACAGGTTGACGATGGCAGCATTGAGGAGGTAGCTGAAAAATTGATTATCATGCATGAGGAATGTGTAGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAATCCCCTCGTCCTCAAGTTGCCCATGCTCACGTTAATCAGGCTGAGAGTGATGACGATGACGACGACGACGTAGAAGAAGATGTCAATAGAAATGATATGATGGTGGATGCCGTTCAACCAGCGCAATCCAGGCCTGCCAATCCTCAGCTCAATCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAATAGGGGTACAAGAAATTAG

Coding sequence (CDS)

ATGGAAGGTGGGGGAAACCGTCTTCTCCCAGCTCATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCCGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTCGAACTATTATGCGCCGAAATTTTCACATGGTTTACTCAGAACAAAGAGCAACTATATATTGATGATTTAGAAATAATTCTTGATGAAGCTATGCTTTCATTGAGTACACAGGTTGACGATGGCAGCATTGAGGAGGTAGCTGAAAAATTGATTATCATGCATGAGGAATGTGTAGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAATCCCCTCGTCCTCAAGTTGCCCATGCTCACGTTAATCAGGCTGAGAGTGATGACGATGACGACGACGACGTAGAAGAAGATGTCAATAGAAATGATATGATGGTGGATGCCGTTCAACCAGCGCAATCCAGGCCTGCCAATCCTCAGCTCAATCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAATAGGGGTACAAGAAATTAG

Protein sequence

MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFTQNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSPRPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGWVQVTSRRNRGTRN*

Homology

[Close]

BLAST of CsGy3G042730 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.4e-11
Identity = 55/177 (31.07%), Postives = 90/177 (50.85%), Query Frame = 0


Query: 16  LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFTQNKEQLYIDDLEIIL 75
           +F E +  VL  W  LQ+AV+N +GG  S++K E +   +  +FT N + L  D++E  +
Sbjct: 11  VFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQPDEVEDFI 70

Query: 76  DEAMLS-LSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIE----RLRQSPRPQVAHAHVN 135
            E M +   T VDDGS+ +VA+++  M ++C  G  + +     +L Q  +     A   
Sbjct: 71  SELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQK-KTSSGRAKAT 130

Query: 136 QAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGWVQVTSRR 188
            A++  DDDDD EE+    D    +   + S  A   L+ E   E +DGW  V  ++
Sbjct: 131 PAQTPQDDDDDDEEEA--MDCEGGSAGASVSSTAVNDLHHE--EEEDDGWTVVRRKK 181

[Close]

BLAST of CsGy3G042730 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-09
Identity = 46/148 (31.08%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 17  FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFTQNKEQLYIDDLEIILD 76
           F+ G+ +V+ +W AL +AVEN WGG DS  K + +   +   F +N++ +    +E  L 
Sbjct: 32  FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLF-KNEKVVDAALIEETLL 91

Query: 77  EAML-SLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERL----RQSPRPQVAHAHVNQ 136
            AM+    T V+D S   +A ++I ++ +C + N++ +E+L    ++  R + +   V+ 
Sbjct: 92  YAMIDEFETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRVVHI 151

Query: 137 AESDDDDDDDVEE-DVNRNDMMVDAVQP 159
              DD+DD+DVE+ D    D  +D V P
Sbjct: 152 EGDDDEDDEDVEDYDDEDEDEEMDEVVP 178

[Close]

BLAST of CsGy3G042730 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-09
Identity = 53/183 (28.96%), Postives = 89/183 (48.63%), Query Frame = 0


Query: 16  LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFTQNKEQLYIDDLEIIL 75
           LF+ G+   L  W ALQ+AVEN +GG  S+ K + L   +  +F +N + L +D++E  L
Sbjct: 11  LFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEVEDFL 70

Query: 76  DEAMLS-LSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERL------RQSPRPQVAHAH 135
            E + +   T V+DGS+ +V+++L  M      G+ +++  +      R+      A   
Sbjct: 71  GELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTATALKT 130

Query: 136 VNQAESDDDDDDDVEE---DVNRNDMMVDAVQPAQSRPANPQLNPEATAE-AEDGWVQVT 188
             + + D+DD D VEE       +    D V P Q  P++P        +  EDGW  V 
Sbjct: 131 ARETDEDEDDVDSVEEMEVTATNDGAATDGVCP-QPEPSDPDAQTIKEEDIVEDGWTIVR 190

[Close]

BLAST of CsGy3G042730 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 55/183 (30.05%), Postives = 90/183 (49.18%), Query Frame = 0


Query: 16  LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFTQNKEQLYIDDLEIIL 75
           LF   +   L  W ALQ+AVEN +GG  S+ K E L   +  +F +N + L +D++E  L
Sbjct: 11  LFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEVEDFL 70

Query: 76  DEAMLS-LSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIER----LRQSPRPQVAHAHVN 135
            E M++   T V+DGS+ +V+++L  M      G+ ++++     + Q      A A   
Sbjct: 71  GELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKCKVRATALPT 130

Query: 136 QAESDDDDD----DDVEEDVNRNDMMVDAV--QPAQSRPANPQLNPEATAEAEDGWVQVT 188
             E+D+DDD    +++E     +    D V  QP  S P +  +  E     EDGW  V 
Sbjct: 131 AGETDEDDDANSVEEMEVAATNDGAATDGVCPQPEPSGPDSQTIKEEDI--VEDGWTIVR 190

[Close]

BLAST of CsGy3G042730 vs. ExPASy Swiss-Prot
Match: Q8C8T8 (Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08
Identity = 50/183 (27.32%), Postives = 88/183 (48.09%), Query Frame = 0


Query: 16  LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFTQNKEQLYIDDLEIIL 75
           LF   +   L  W ALQ+AVEN +GG  S+ K E L   +  +F  N + L ++++E  L
Sbjct: 11  LFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD-LELEEIEDFL 70

Query: 76  DEAMLS-LSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERL---------RQSPRPQVA 135
            E M +   T V+DGS+ +V+++L  M      G+ ++++ +         + +  P + 
Sbjct: 71  GELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKKCKVTATPLMT 130

Query: 136 HAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAE-AEDGWVQVT 188
               + AE D D  +++E     +    D V P Q +P++P        +  EDGW  V 
Sbjct: 131 AKETDVAEDDVDSVEEMEVTATNDGATTDEVCP-QPQPSDPDTQTIKEEDIVEDGWTIVR 190

[Close]

BLAST of CsGy3G042730 vs. NCBI nr
Match: XP_004136275.1 (pre-rRNA-processing protein TSR2 homolog [Cucumis sativus] >KGN60230.1 hypothetical protein Csa_002055 [Cucumis sativus])

HSP 1 Score: 378 bits (971), Expect = 3.88e-132
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60
           MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT
Sbjct: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60

Query: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120
           QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180
           RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 193
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of CsGy3G042730 vs. NCBI nr
Match: XP_016903483.1 (PREDICTED: pre-rRNA-processing protein TSR2 [Cucumis melo] >TYK31303.1 pre-rRNA-processing protein TSR2 [Cucumis melo var. makuwa])

HSP 1 Score: 354 bits (909), Expect = 1.10e-122
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60
           MEGGGNRLLPA AFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC++IFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120
           QNKEQLYIDDLE ILDEAMLSL+TQVDDGSIEEVAE+LI MHEECVD NFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180
           RPQVAHAHVNQA SDDDDDDDVEEDVNRNDMMVDAVQPAQSRP N QLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 193
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of CsGy3G042730 vs. NCBI nr
Match: KAA0038692.1 (pre-rRNA-processing protein TSR2 [Cucumis melo var. makuwa])

HSP 1 Score: 317 bits (813), Expect = 4.24e-108
Identity = 168/200 (84.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60
           MEGGGNRLLPA AFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC++IFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120
           QNKEQLYIDDLE ILDEAMLSL+TQVDDGSIEEVAE+LI MHEECVD NFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNR-------NDMMVDAVQPAQSRPANPQLNPEAT 180
           RPQVAHAHVNQ          V +  +R       NDMMVDAVQPAQSRP N QLNPEAT
Sbjct: 121 RPQVAHAHVNQ----------VAQFFHRSTLLNRKNDMMVDAVQPAQSRPVNHQLNPEAT 180

Query: 181 AEAEDGWVQVTSRRNRGTRN 193
           AEAEDGWVQVTSRRNRGTRN
Sbjct: 181 AEAEDGWVQVTSRRNRGTRN 190

[Close]

BLAST of CsGy3G042730 vs. NCBI nr
Match: XP_023534881.1 (pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534882.1 pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucurbita pepo subsp. pepo] >XP_023534883.1 pre-rRNA-processing protein TSR2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292 bits (748), Expect = 4.02e-98
Identity = 158/199 (79.40%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60
           MEGG NRLLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC++I TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120
           QNKE LYIDDLE+ILDEA+LSL+TQVDDGSIEEVAE+LI+MHEEC+DGNFSSIE+LRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 RPQVAHAHVNQAESDDDDDDDVEE--DV----NRNDMMVDAVQPAQSRPANPQLNPEATA 180
            PQVA +HV+Q  SDDD+++D EE  DV     R DMMVDA QP   RP N Q  PEATA
Sbjct: 121 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQP---RPVN-QPTPEATA 180

Query: 181 EAEDGWVQVTSRRNRGTRN 193
           EAEDGWVQVTSRR+RGTRN
Sbjct: 181 EAEDGWVQVTSRRSRGTRN 195

[Close]

BLAST of CsGy3G042730 vs. NCBI nr
Match: XP_022936382.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata])

HSP 1 Score: 290 bits (742), Expect = 3.29e-97
Identity = 156/199 (78.39%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60
           MEGG NRLLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC++I TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120
           QNKE LYIDDLE+ILDEA+LSL+TQVDDGSIEEVAE+LI+MHEEC+DGNFSSIE+LRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 RPQVAHAHVNQAESDDDDDDDVEE--DV----NRNDMMVDAVQPAQSRPANPQLNPEATA 180
            P+VA +HV+Q  SDDD+++D EE  DV     R DMMVDA+QP    P N Q  PEATA
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDAIQPT---PVN-QPTPEATA 180

Query: 181 EAEDGWVQVTSRRNRGTRN 193
           EAEDGWVQVTSRR+RGTRN
Sbjct: 181 EAEDGWVQVTSRRSRGTRN 195

[Close]

BLAST of CsGy3G042730 vs. ExPASy TrEMBL
Match: A0A0A0LDZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889860 PE=3 SV=1)

HSP 1 Score: 378 bits (971), Expect = 1.88e-132
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60
           MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT
Sbjct: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60

Query: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120
           QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180
           RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 193
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of CsGy3G042730 vs. ExPASy TrEMBL
Match: A0A5D3E598 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006020 PE=3 SV=1)

HSP 1 Score: 354 bits (909), Expect = 5.33e-123
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60
           MEGGGNRLLPA AFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC++IFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120
           QNKEQLYIDDLE ILDEAMLSL+TQVDDGSIEEVAE+LI MHEECVD NFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180
           RPQVAHAHVNQA SDDDDDDDVEEDVNRNDMMVDAVQPAQSRP N QLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 193
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of CsGy3G042730 vs. ExPASy TrEMBL
Match: A0A1S4E5H6 (pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=3 SV=1)

HSP 1 Score: 354 bits (909), Expect = 5.33e-123
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60
           MEGGGNRLLPA AFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC++IFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120
           QNKEQLYIDDLE ILDEAMLSL+TQVDDGSIEEVAE+LI MHEECVD NFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180
           RPQVAHAHVNQA SDDDDDDDVEEDVNRNDMMVDAVQPAQSRP N QLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 193
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of CsGy3G042730 vs. ExPASy TrEMBL
Match: A0A5A7T5E4 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G002360 PE=3 SV=1)

HSP 1 Score: 317 bits (813), Expect = 2.05e-108
Identity = 168/200 (84.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60
           MEGGGNRLLPA AFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC++IFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120
           QNKEQLYIDDLE ILDEAMLSL+TQVDDGSIEEVAE+LI MHEECVD NFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNR-------NDMMVDAVQPAQSRPANPQLNPEAT 180
           RPQVAHAHVNQ          V +  +R       NDMMVDAVQPAQSRP N QLNPEAT
Sbjct: 121 RPQVAHAHVNQ----------VAQFFHRSTLLNRKNDMMVDAVQPAQSRPVNHQLNPEAT 180

Query: 181 AEAEDGWVQVTSRRNRGTRN 193
           AEAEDGWVQVTSRRNRGTRN
Sbjct: 181 AEAEDGWVQVTSRRNRGTRN 190

[Close]

BLAST of CsGy3G042730 vs. ExPASy TrEMBL
Match: A0A6J1F8A7 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443017 PE=3 SV=1)

HSP 1 Score: 290 bits (742), Expect = 1.60e-97
Identity = 156/199 (78.39%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60
           MEGG NRLLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC++I TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120
           QNKE LYIDDLE+ILDEA+LSL+TQVDDGSIEEVAE+LI+MHEEC+DGNFSSIE+LRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 RPQVAHAHVNQAESDDDDDDDVEE--DV----NRNDMMVDAVQPAQSRPANPQLNPEATA 180
            P+VA +HV+Q  SDDD+++D EE  DV     R DMMVDA+QP    P N Q  PEATA
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDAIQPT---PVN-QPTPEATA 180

Query: 181 EAEDGWVQVTSRRNRGTRN 193
           EAEDGWVQVTSRR+RGTRN
Sbjct: 181 EAEDGWVQVTSRRSRGTRN 195

[Close]

BLAST of CsGy3G042730 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-29
Identity = 77/189 (40.74%), Postives = 116/189 (61.38%), Query Frame = 0


Query: 6   NRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFTQNKEQ 65
           N  L   A  + +EGIGL+L RW+A++ AVEN WGGRDS+ K     A +F +F Q+K+ 
Sbjct: 4   NATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP 63

Query: 66  LY-IDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSPRPQV 125
           +  I+ L  +LD+ +  L+T  +DGS++EVA  L+ ++E+C +GN+  +E LR +   Q 
Sbjct: 64  VKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELR-ATYSQT 123

Query: 126 AHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGWVQVT 185
           + + V  +  DD++ DD E+D    DMMVDA    Q + A P   P     A+DGW  V+
Sbjct: 124 SASVVKVSNGDDEESDD-EDDDQTTDMMVDASN--QKQEAMPVDEP----VADDGWTVVS 183

Query: 186 SRRNRGTRN 194
           SR+N+G RN
Sbjct: 184 SRKNKGKRN 184

[Close]

BLAST of CsGy3G042730 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-16
Identity = 42/94 (44.68%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 16  LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFTQNKEQLYIDDLEIIL 75
           + Q  IG +LSRW  LQ+AV+N+WGG DS +K + L   +F   +Q+   + ++++E +L
Sbjct: 30  VLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQS-NVITVEEIENLL 89

Query: 76  DEA-MLSLSTQVDDGSIEEVAEKLIIMHEECVDG 109
            E+ +LS +T+++DGSIEEVAE+L+I+HEE + G
Sbjct: 90  HESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122

The following BLAST results are available for this feature:

BLAST of CsGy3G042730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KRG3	5.4e-11	31.07	Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=...	[more]
Q06672	2.3e-09	31.08	Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
Q969E8	5.0e-09	28.96	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV...	[more]
Q3T090	1.9e-08	30.05	Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1	[more]
Q8C8T8	2.5e-08	27.32	Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 S...	[more]

BLAST of CsGy3G042730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136275.1	3.88e-132	100.00	pre-rRNA-processing protein TSR2 homolog [Cucumis sativus] >KGN60230.1 hypotheti...	[more]
XP_016903483.1	1.10e-122	93.78	PREDICTED: pre-rRNA-processing protein TSR2 [Cucumis melo] >TYK31303.1 pre-rRNA-...	[more]
KAA0038692.1	4.24e-108	84.00	pre-rRNA-processing protein TSR2 [Cucumis melo var. makuwa]	[more]
XP_023534881.1	4.02e-98	79.40	pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo]...	[more]
XP_022936382.1	3.29e-97	78.39	pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata]	[more]

BLAST of CsGy3G042730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDZ8	1.88e-132	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889860 PE=3 SV=1	[more]
A0A5D3E598	5.33e-123	93.78	Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4E5H6	5.33e-123	93.78	pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=3 SV...	[more]
A0A5A7T5E4	2.05e-108	84.00	Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6J1F8A7	1.60e-97	78.39	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CsGy3G042730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27990.1	1.5e-29	40.74	Pre-rRNA-processing protein TSR2, conserved region	[more]
AT3G22510.1	2.0e-16	44.68	Pre-rRNA-processing protein TSR2, conserved region	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019398	Pre-rRNA-processing protein TSR2	PFAM	PF10273	WGG	coord: 17..96 e-value: 9.4E-22 score: 77.4
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 9..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G042730.2	CsGy3G042730.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005634	nucleus