CsGy3G032460 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G032460
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	SRP54 domain-containing protein
Location	Gy14Chr3: 31754710 .. 31755130 (-)
RNA-Seq Expression	CsGy3G032460
Synteny	CsGy3G032460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCCAAGGAAGAGATGGGGAAGGGTTTCCAGCTGTGGACGTGGAGAGAGAACTAAATCCAGGAGATAACAAGCACGTTGAAGTCGATCCCGTTTCCTCTCAAGTTGCTACATCTTTGGAAGCTAAGGTCAAGCTAACTTTTTTGTTTTCTCATCGACAAAGATCGATAAGTTTGAATAACACTAACAGTGATATTTTAAGTGAGAATGTAATGGAATAAGAGAAAAATAATAATGTGTAACACATATATATTTCAGGAACATGAGAAGAGAAAAGCAGCGGAAGACGAGCGGAAGAGAGCAAAGAAGAAGAAGGAAGCAATGCAAACATTGAAGACAACGTTCATCGTCTCCGGCATCATCGCTGCCGTAGCGGTGGCAGCCTTTGCCATTGTTAAGAAATTGCGTGAAAACTAA

mRNA sequence

ATGGGAAGCCAAGGAAGAGATGGGGAAGGGTTTCCAGCTGTGGACGTGGAGAGAGAACTAAATCCAGGAGATAACAAGCACGTTGAAGTCGATCCCGTTTCCTCTCAAGTTGCTACATCTTTGGAAGCTAAGGAACATGAGAAGAGAAAAGCAGCGGAAGACGAGCGGAAGAGAGCAAAGAAGAAGAAGGAAGCAATGCAAACATTGAAGACAACGTTCATCGTCTCCGGCATCATCGCTGCCGTAGCGGTGGCAGCCTTTGCCATTGTTAAGAAATTGCGTGAAAACTAA

Coding sequence (CDS)

ATGGGAAGCCAAGGAAGAGATGGGGAAGGGTTTCCAGCTGTGGACGTGGAGAGAGAACTAAATCCAGGAGATAACAAGCACGTTGAAGTCGATCCCGTTTCCTCTCAAGTTGCTACATCTTTGGAAGCTAAGGAACATGAGAAGAGAAAAGCAGCGGAAGACGAGCGGAAGAGAGCAAAGAAGAAGAAGGAAGCAATGCAAACATTGAAGACAACGTTCATCGTCTCCGGCATCATCGCTGCCGTAGCGGTGGCAGCCTTTGCCATTGTTAAGAAATTGCGTGAAAACTAA

Protein sequence

MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN*

Homology

[Close]

BLAST of CsGy3G032460 vs. NCBI nr
Match: XP_011652018.1 (uncharacterized protein LOC105434975 [Cucumis sativus] >KGN59143.1 hypothetical protein Csa_001723 [Cucumis sativus])

HSP 1 Score: 178 bits (452), Expect = 3.92e-56
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60
          MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK
Sbjct: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60

Query: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96
          KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Sbjct: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of CsGy3G032460 vs. NCBI nr
Match: XP_008442853.1 (PREDICTED: uncharacterized protein LOC103486621 [Cucumis melo])

HSP 1 Score: 174 bits (441), Expect = 1.87e-54
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60
          MGSQGRDGEGFPAVDVERELNPGDNKHVEVDP+SSQVATSLEAKEHEKR AAE+ERKRAK
Sbjct: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRTAAEEERKRAK 60

Query: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96
          KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Sbjct: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of CsGy3G032460 vs. NCBI nr
Match: XP_022144747.1 (uncharacterized protein LOC111014362 [Momordica charantia])

HSP 1 Score: 125 bits (314), Expect = 5.16e-35
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 8   GEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAMQ 67
           G  FPA DV+RELNPG N+HVEVDPVSS+VA SLE KE  KRKA E+ERK AKK  + M+
Sbjct: 15  GSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVEEERKEAKKN-DTMK 74

Query: 68  TLKTTFIVSGIIAAVAVAAFAIVKKLREN 96
           TLKTTFIVSG+IAAVAVAAFAIVKKLREN
Sbjct: 75  TLKTTFIVSGVIAAVAVAAFAIVKKLREN 102

[Close]

BLAST of CsGy3G032460 vs. NCBI nr
Match: XP_023005785.1 (uncharacterized protein LOC111498680 [Cucurbita maxima])

HSP 1 Score: 120 bits (302), Expect = 3.58e-33
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MGSQGRDGEG-------FPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAE 60
           M S GRDG         FPAVDV+REL+PG N+HV VDP+SSQVA S+E KE  KRKA  
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  DERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96
           +E ++  KKK+ MQTLKTTFIVSG+IAAVAVAAF +VKKLR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of CsGy3G032460 vs. NCBI nr
Match: XP_022947065.1 (uncharacterized protein LOC111451047 [Cucurbita moschata])

HSP 1 Score: 120 bits (301), Expect = 5.08e-33
Identity = 66/103 (64.08%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MGSQGRDGEG-------FPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAE 60
           M S GRDG         FPAVDV+REL+PG N+HV VDP+SSQVA S+E KE  KRKA  
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  DERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96
           +E ++  KKK+ MQTLKTTFIVSG++AAVAVAAF +VKKLR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of CsGy3G032460 vs. ExPASy TrEMBL
Match: A0A0A0LBF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777020 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 1.90e-56
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60
          MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK
Sbjct: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60

Query: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96
          KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Sbjct: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of CsGy3G032460 vs. ExPASy TrEMBL
Match: A0A1S3B6R1 (uncharacterized protein LOC103486621 OS=Cucumis melo OX=3656 GN=LOC103486621 PE=4 SV=1)

HSP 1 Score: 174 bits (441), Expect = 9.05e-55
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60
          MGSQGRDGEGFPAVDVERELNPGDNKHVEVDP+SSQVATSLEAKEHEKR AAE+ERKRAK
Sbjct: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRTAAEEERKRAK 60

Query: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96
          KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Sbjct: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of CsGy3G032460 vs. ExPASy TrEMBL
Match: A0A6J1CUK2 (uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014362 PE=4 SV=1)

HSP 1 Score: 125 bits (314), Expect = 2.50e-35
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 8   GEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAMQ 67
           G  FPA DV+RELNPG N+HVEVDPVSS+VA SLE KE  KRKA E+ERK AKK  + M+
Sbjct: 15  GSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVEEERKEAKKN-DTMK 74

Query: 68  TLKTTFIVSGIIAAVAVAAFAIVKKLREN 96
           TLKTTFIVSG+IAAVAVAAFAIVKKLREN
Sbjct: 75  TLKTTFIVSGVIAAVAVAAFAIVKKLREN 102

[Close]

BLAST of CsGy3G032460 vs. ExPASy TrEMBL
Match: A0A6J1KYC8 (uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 1.73e-33
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MGSQGRDGEG-------FPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAE 60
           M S GRDG         FPAVDV+REL+PG N+HV VDP+SSQVA S+E KE  KRKA  
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  DERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96
           +E ++  KKK+ MQTLKTTFIVSG+IAAVAVAAF +VKKLR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of CsGy3G032460 vs. ExPASy TrEMBL
Match: A0A6J1G5S8 (uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC111451047 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 2.46e-33
Identity = 66/103 (64.08%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MGSQGRDGEG-------FPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAE 60
           M S GRDG         FPAVDV+REL+PG N+HV VDP+SSQVA S+E KE  KRKA  
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  DERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96
           +E ++  KKK+ MQTLKTTFIVSG++AAVAVAAF +VKKLR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of CsGy3G032460 vs. TAIR 10
Match: AT3G52620.1 (unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 7  DGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAM 66
          D   FP  D E ELNPG NK+ EVDPVSS++A+       EK +   ++R+ AK K++  
Sbjct: 4  DTTTFPEGDAEAELNPGQNKNFEVDPVSSEIAS-------EKVQKIVEKRENAKAKRDGA 63

Query: 67 QTLKTTFIVSGIIAAVAVAAFAIVKKLREN 97
          +TLK T IVS +I AVA AAFAI KKL+EN
Sbjct: 64 RTLKNTIIVSAVIVAVAGAAFAITKKLKEN 86

The following BLAST results are available for this feature:

BLAST of CsGy3G032460 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G032460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652018.1	3.92e-56	100.00	uncharacterized protein LOC105434975 [Cucumis sativus] >KGN59143.1 hypothetical ...	[more]
XP_008442853.1	1.87e-54	96.88	PREDICTED: uncharacterized protein LOC103486621 [Cucumis melo]	[more]
XP_022144747.1	5.16e-35	77.53	uncharacterized protein LOC111014362 [Momordica charantia]	[more]
XP_023005785.1	3.58e-33	65.05	uncharacterized protein LOC111498680 [Cucurbita maxima]	[more]
XP_022947065.1	5.08e-33	64.08	uncharacterized protein LOC111451047 [Cucurbita moschata]	[more]

BLAST of CsGy3G032460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBF7	1.90e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777020 PE=4 SV=1	[more]
A0A1S3B6R1	9.05e-55	96.88	uncharacterized protein LOC103486621 OS=Cucumis melo OX=3656 GN=LOC103486621 PE=...	[more]
A0A6J1CUK2	2.50e-35	77.53	uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1KYC8	1.73e-33	65.05	uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680...	[more]
A0A6J1G5S8	2.46e-33	64.08	uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]

BLAST of CsGy3G032460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52620.1	1.2e-14	52.22	unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..64
None	No IPR available	PANTHER	PTHR37741	TRANSMEMBRANE PROTEIN	coord: 5..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G032460.2	CsGy3G032460.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane