CsGy3G024975 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G024975
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 25337092 .. 25337971 (-)
RNA-Seq Expression	CsGy3G024975
Synteny	CsGy3G024975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCACCCCCCCCCCCCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCCAACTCTTTTTCTTCAAAGGCTTCTTGCTTTTTTCTTCTTCTTTTTTGTTTCTTCTTCTCCTTTCTACACCCTTTCTCTTTGGAATTTGGGTATGAATTTACTTCTTATTCTTTTGATTTCTTAGATATCTAATTTCATTTCCATTTTCACCTGGTCCTTTCTTCTTTTGGGATTCAACCATTTGTATGCTCTTATTTCATTTTTATTTTCTTAATTTTTTTTTTACAATGTGTTGTCCAAGTCAGTTTTTTCAGCTACTTCATCGTTTCCTTCAATAATTAGTCTACAGGTTTTTATATTTTACTTGTTTCCTTTGAAATTCTTGTTAATTTGGCTGGTGTGTGTGTGTGTTGTGCTGAAGGTGAAGTTGTAGAATTTTTGTTTTTCAATTATTATAATTGGAAGAGCTTTGACTTCATGTCATCTGATGGTAAGAAGCTCACAATTTGGGTTTTATTGAATTCATATGGGGAAAAGGTTGTTTCTGCTTCTGTTAGTAATCAAATTGTTAGGTTTTTGGAACTTAGCTCCAAATCTAATCATATGAACTTTGGTGATTGATGGTTTTTGTATATCCCTTTCTAGATGAGATGTATATGCTTTGGTTCATTAATTTTGTTTCTCTGGATGTATTTGTATATATGTCTTCCCTCTATAGATGTCAAGATTGATGTTTTCTCTTTCCCTCTTTCCATTTCTAGATATTGGGCTTAGCGATAAGCTGA

mRNA sequence

ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCACCCCCCCCCCCCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCCAACTCTTTTTCTTCAAAGGCTTCTTGCTTTTTTCTTCTTCTTTTTTGTTTCTTCTTCTCCTTTCTACACCCTTTCTCTTTGGAATTTGGATATTGGGCTTAGCGATAAGCTGA

Coding sequence (CDS)

ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCACCCCCCCCCCCCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCCAACTCTTTTTCTTCAAAGGCTTCTTGCTTTTTTCTTCTTCTTTTTTGTTTCTTCTTCTCCTTTCTACACCCTTTCTCTTTGGAATTTGGATATTGGGCTTAGCGATAAGCTGA

Protein sequence

MTTKPNHHGRHLTRSAGHIFISPPPPPPVTQELHLPISHRRIILWVFRFYSPTLFLQRLLAFFFFFFVSSSPFYTLSLWNLDIGLSDKLX

Homology

[Close]

BLAST of CsGy3G024975 vs. NCBI nr
Match: KAG6606357.1 (hypothetical protein SDJN03_03674, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 1.18e-15
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1  MTTKPNHHGRHLTRSAGHIFISPPPPPPVTQELHLPISHRRIILWVFRFYSPTLFLQRLL 60
          MTTK NHHGRHL R +  + ++    PPVTQELH PIS RRII   F    P+LFL+ + 
Sbjct: 1  MTTKRNHHGRHLIRLSSAVPVTYLNHPPVTQELHPPISQRRIICG-FSDSIPSLFLRGVP 60

Query: 61 AFFFFFFVSSSPFYTLSLWNLDIGL 85
           FFFFFF  SS F TLS+  LD+GL
Sbjct: 61 LFFFFFFFPSSTFQTLSIRLLDVGL 84

[Close]

BLAST of CsGy3G024975 vs. NCBI nr
Match: KGN58291.1 (hypothetical protein Csa_017580 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.41e-09
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MTTKPNHHGRHLTRSAGHIFISPPPPP 27
          MTTKPNHHGRHLTRSAGHIFISPPP P
Sbjct: 1  MTTKPNHHGRHLTRSAGHIFISPPPSP 27

[Close]

BLAST of CsGy3G024975 vs. ExPASy TrEMBL
Match: A0A0A0LDX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608700 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.65e-09
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MTTKPNHHGRHLTRSAGHIFISPPPPP 27
          MTTKPNHHGRHLTRSAGHIFISPPP P
Sbjct: 1  MTTKPNHHGRHLTRSAGHIFISPPPSP 27

The following BLAST results are available for this feature:

BLAST of CsGy3G024975 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G024975 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606357.1	1.18e-15	56.47	hypothetical protein SDJN03_03674, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN58291.1	3.41e-09	96.30	hypothetical protein Csa_017580 [Cucumis sativus]	[more]

BLAST of CsGy3G024975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDX1	1.65e-09	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608700 PE=4 SV=1	[more]

BLAST of CsGy3G024975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G024975.1	CsGy3G024975.1	mRNA