CsGy3G019480 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G019480
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTranscription elongation factor 1 homolog
LocationGy14Chr3: 15714730 .. 15716760 (-)
RNA-Seq ExpressionCsGy3G019480
SyntenyCsGy3G019480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTCAATCCGACCTGCGCTACCATTTCAACTGCGAACGATAATCTCTCCCAACTCTATCACCGATCAGGTTCCTCTTCTTTCTTCTCTTTTCTTTTTAGCCTTCCTAGTTCTACCCTTTTTATTAAGCTTTTCACTGGAATATTGTTATGCCTTTTTCGTTACGGCCCCTAACCTAGGGTTCTACTTGTTTTTTGTATCTTGTGGCGTGCTTCCGTTTGAACCTTCTTTACGTTTTTCGTTGCGATTGTTATTTTTTTCATCTTCCTGTTTCTTTCCTTGCGATTGCTGGAAATTCATATCTAGTTTTTTTCTGAATAACTTTAAGTTATGTTATCCGTAGCGGCAGCTGAAATTTCCGGAAGTTTTGGTTATTATTTGTTTTTTATTCTTTTCATGGTCGATGGATGTCTATGATTTTGTAGGGAAGTGATCCTTGCACCTCTAGTACTGTTTTACCTAAGTGCGGTGTTTCATGAATTGGGTATGAACGTTTTGGGATGATGTGTACGGATTATGGATATGAGTTTTACTTTGTGAGATTTCGTAGCTTATCGATTGTGCTTTTTATATGCTAGAAAGATCTATTATTTATATCCTTTTAAGTTTGATTACGGCTCTCATTTTGAAGACTTATTGATATTGTTATTGTTATTGGATGCGAACAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATGTAAGTTTGCATTTTGTTCCTCTTAGGTTCTTGTAACATGCGAGTTTGGGAGGGATATGTTATAAGGACTTAAGTATTTTCGTGGCCTTGTGGAAAAGCTGGACTGATGAATGTGTATAATAATAAGTAACTTGGCTCATGGGCTAGTCTCTGTCTAGGTGTGCCTTGTTTGTTTTGCAATCTGACGAGGGTGTTTGTATGGTTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGGTATTCTCTTTAATTCTCTTGTTTGCTATCTGTTGTCTGTGTTTTACACTGCGCTTTGTACTATGTTTCAAATGGAAGCACAAACAGTCTATGGTTCTTTTTTAGGTCTCTTCTTTTAAAGTATTTTTTATGAATAATTTTGTCCTTGTGGAGCAGTGTTAGTTTGATCTGAACTATAATTTGGGCACAGGACTATATGATTATTCTAGTGAACTCATTTTCTCTGTGCTCAAATACACATGTGCTCAAATAGACAGATGAATGGAAGCTTTGTCATGCAGTTGTTCTACGTTCCATCATCACTAGTTTTTCGTTCCGGTTATTGATAGTCTATCAGATGAAAATTCGTCCAATTATGTTTAGGGCATCGTTGTATAATTCAGGTGAATTGAGTTCTGTGTCTAATCCAGGGCTTACTGTGTGTTTTCATTTGTCTGTTGTAAGACCCCTAGTTAAGGAAATTTAGGATTATTCGTGTGGTTATTAGAAGGGGCATATTTGTAAAGCTAAAAAGGTTCGTTAGGCCTTTTTGTTATGTAGAGAGAGGGAGTGCTGTTGGGAGAAAGGGGTGAAGAATTTTGTGGGATTTCCTTTGTGGAAGTTGGAAGAGACTCCTCTCGAAAGGCTAGATTATCTTGTTACTTATCTTGTTATATTTCAATGTTCTTGAGTTTTTGTGTGTGTGCACGTGTTTCTTTGTTTGGTGATATCCTAACATCACATATAAATTTTTGTTGCACTAACATTTCAATTCTTTTACTTTGCAGCCTTGAGTGAGGCAATAGACATGTAAGTAAAATTTTAAAGCTACTGGTTTTTGTCAACATTTGTTGTTGCTCAATAGTGCTTCAGTTAACGTGATGTTTTTTTTTTTTTTGCTTTTGACCAGATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG

mRNA sequence

TTCTTCAATCCGACCTGCGCTACCATTTCAACTGCGAACGATAATCTCTCCCAACTCTATCACCGATCAGGGAAGTGATCCTTGCACCTCTAGTACTGTTTTACCTAAGTGCGGTGTTTCATGAATTGGGTATGAACGTTTTGGGATGATGTGTACGGATTATGGATATGAGTTTTACTTTGTGAGATTTCGTAGCTTATCGATTGTGCTTTTTATATGCTAGAAAGATCTATTATTTATATCCTTTTAAGTTTGATTACGGCTCTCATTTTGAAGACTTATTGATATTGTTATTGTTATTGGATGCGAACAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCCTTGAGTGAGGCAATAGACATATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG

Coding sequence (CDS)

ATGCGAACAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCCTTGAGTGAGGCAATAGACATATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG

Protein sequence

MRTASLTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA*
Homology
[Close]
BLAST of CsGy3G019480 vs. ExPASy Swiss-Prot
Match: Q8LHP0 (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.7e-42
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDD 97
           AL+E IDIYSEWIDECERVNN+EDD
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]
BLAST of CsGy3G019480 vs. ExPASy Swiss-Prot
Match: Q8LEF3 (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 9.0e-39
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDD 97
          TAL+EAIDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]
BLAST of CsGy3G019480 vs. ExPASy Swiss-Prot
Match: P36053 (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-20
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I
Sbjct: 1  MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 71 TALSEAIDIYSEWIDECERVNN 93
           +LS+ +D+YS+W D  E VN+
Sbjct: 61 NSLSQPVDVYSDWFDAVEEVNS 82

[Close]
BLAST of CsGy3G019480 vs. ExPASy Swiss-Prot
Match: A4IFR3 (Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.5e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 70
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 71 ITALSEAIDIYSEWIDECERVN 92
          IT LSE +D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]
BLAST of CsGy3G019480 vs. ExPASy Swiss-Prot
Match: P60002 (Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.5e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 70
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 71 ITALSEAIDIYSEWIDECERVN 92
          IT LSE +D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]
BLAST of CsGy3G019480 vs. NCBI nr
Match: XP_038896920.1 (transcription elongation factor 1 homolog [Benincasa hispida])

HSP 1 Score: 188 bits (478), Expect = 1.31e-59
Identity = 88/93 (94.62%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 6   LTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQES 65
           ++ QDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQES
Sbjct: 34  ISDQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDLKNLIGEASCRICQES 93

Query: 66  FSTTITALSEAIDIYSEWIDECERVNNLEDDAA 98
           FSTTITALSEAID+YSEWIDECERVNNLEDDAA
Sbjct: 94  FSTTITALSEAIDVYSEWIDECERVNNLEDDAA 126

[Close]
BLAST of CsGy3G019480 vs. NCBI nr
Match: XP_004146241.1 (transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PREDICTED: transcription elongation factor 1 homolog [Cucumis melo] >KGN57642.1 hypothetical protein Csa_011748 [Cucumis sativus])

HSP 1 Score: 184 bits (468), Expect = 1.21e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDDAA 98
          TALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]
BLAST of CsGy3G019480 vs. NCBI nr
Match: XP_010090451.1 (transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509.1 hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 180 bits (456), Expect = 8.17e-57
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDDAA 98
          TAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]
BLAST of CsGy3G019480 vs. NCBI nr
Match: KAF7803378.1 (transcription elongation factor 1-like protein [Senna tora])

HSP 1 Score: 179 bits (454), Expect = 1.65e-56
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDDAA 98
           ALSE IDIYSEWIDECERVNNLEDD A
Sbjct: 61 NALSEPIDIYSEWIDECERVNNLEDDGA 88

[Close]
BLAST of CsGy3G019480 vs. NCBI nr
Match: XP_028780339.1 (transcription elongation factor 1 homolog [Prosopis alba])

HSP 1 Score: 179 bits (454), Expect = 1.65e-56
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDDAA 98
          TALSE ID+YSEWIDECERVNNLEDD A
Sbjct: 61 TALSEPIDVYSEWIDECERVNNLEDDGA 88

[Close]
BLAST of CsGy3G019480 vs. ExPASy TrEMBL
Match: A0A0A0LAG5 (Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G236590 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 5.83e-59
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDDAA 98
          TALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]
BLAST of CsGy3G019480 vs. ExPASy TrEMBL
Match: A0A1S3C2B7 (Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC103496063 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 5.83e-59
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDDAA 98
          TALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]
BLAST of CsGy3G019480 vs. ExPASy TrEMBL
Match: W9R774 (Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_011426 PE=3 SV=1)

HSP 1 Score: 180 bits (456), Expect = 3.95e-57
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDDAA 98
          TAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]
BLAST of CsGy3G019480 vs. ExPASy TrEMBL
Match: A0A2P5DXC0 (Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_022910 PE=3 SV=1)

HSP 1 Score: 178 bits (452), Expect = 1.61e-56
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQESFSTT+
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDDAA 98
          TAL+E IDIYSEWIDECERVNNLE+DAA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]
BLAST of CsGy3G019480 vs. ExPASy TrEMBL
Match: A0A6A1W9X5 (Transcription elongation factor 1 homolog OS=Morella rubra OX=262757 GN=CJ030_MR2G018503 PE=3 SV=1)

HSP 1 Score: 178 bits (452), Expect = 1.61e-56
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRSKPPPKKRMDKLDTVFSCPFCNHGTSIECRIDMKNLIGEASCRICQESFSTTI 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDDAA 98
          TAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]
BLAST of CsGy3G019480 vs. TAIR 10
Match: AT5G46030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 160.6 bits (405), Expect = 6.4e-40
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 0 

Query: 11 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 70
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 71 TALSEAIDIYSEWIDECERVNNLEDD 97
          TAL+EAIDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

The following BLAST results are available for this feature:
BLAST of CsGy3G019480 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LHP08.7e-4290.70Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399... [more]
Q8LEF39.0e-3986.05Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5... [more]
P360532.5e-2052.44Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450... [more]
A4IFR35.5e-2053.66Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV... [more]
P600025.5e-2053.66Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 ... [more]
BLAST of CsGy3G019480 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038896920.11.31e-5994.62transcription elongation factor 1 homolog [Benincasa hispida][more]
XP_004146241.11.21e-58100.00transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PRED... [more]
XP_010090451.18.17e-5796.59transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509... [more]
KAF7803378.11.65e-5696.59transcription elongation factor 1-like protein [Senna tora][more]
XP_028780339.11.65e-5695.45transcription elongation factor 1 homolog [Prosopis alba][more]
BLAST of CsGy3G019480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAG55.83e-59100.00Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G23... [more]
A0A1S3C2B75.83e-59100.00Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC10349606... [more]
W9R7743.95e-5796.59Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_0... [more]
A0A2P5DXC01.61e-5694.32Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=Pa... [more]
A0A6A1W9X51.61e-5694.32Transcription elongation factor 1 homolog OS=Morella rubra OX=262757 GN=CJ030_MR... [more]
BLAST of CsGy3G019480 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G46030.16.4e-4086.05unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701,... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007808Transcription elongation factor 1PFAMPF05129Elf1coord: 12..88
e-value: 6.3E-31
score: 106.2
IPR007808Transcription elongation factor 1PANTHERPTHR20934UNCHARACTERIZEDcoord: 6..98
IPR038567Transcription elongation factor 1 superfamilyGENE3D2.20.25.190coord: 26..92
e-value: 1.9E-29
score: 103.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 11..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G019480.2CsGy3G019480.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006368 transcription elongation from RNA polymerase II promoter
biological_process GO:0006414 translational elongation
cellular_component GO:0008023 transcription elongation factor complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000993 RNA polymerase II complex binding
molecular_function GO:0003746 translation elongation factor activity