CsGy3G012200 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G012200
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	transcription factor bHLH104-like
Location	Gy14Chr3: 9266396 .. 9270258 (+)
RNA-Seq Expression	CsGy3G012200
Synteny	CsGy3G012200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTAAAAAAAAAGAAAAAGTAGAGAGCATATTCCATTTGGAGTGAATGGAAGAGAAGAATTATCTGTAAAAAACAGAAAAAGAAATTTGGAGTGGGGTTGTAGAATTTGGCGATGTTGGTGAGCACAGCGGAAGAGACAATGATCCCTCAACACGGCGGCGGTTAATCCATATTCCTTCTCCCAAAAAAGTTGAATTTTTTTACACGTGTTTCTTTATCACTGGATGTTCTAATCCCCCCTCATCGTTGTTTTTTTCTCTCCCAATTTTCCATTCCCTAATTTTCCCCAATCTCTTCGATGGCCTAATGGGACTGAAATTGGAAGAAGAGGTACGGCGTTGGACGACCCTTTGATTTCAGATCACATCACATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTCGATTGCTCCTTCTTCCCCGACGCCGACAATCTTATTAACCCTTCACTCCATCCTTTCTGGCCTCCTAATCATTCCAGGCAATCATTCCTCAACACCCATTTTTGCATTCTCCCTTTCCTCTTCTCTTTTACTCTCTTCTTTCATTATACGAACCACTTCACGAATTTGGGCTTTTCGTTTCATTTGCAGGAGGGATTCTTTAGCGGATACTGATGTTTCAGCCGGTCATCTCGAATCTGAAGAAAATGATTGTTCCAGGAAGAGGTAGTTTTTTTTGTCTGTACCGATATTGTACCAGATAATACCATTTTACTTTCCTGAATTCTGCTTTCTCATTTTGGATGTTGCTTAACTCTTTTCAGTTGGAATTTGGAAATTAGCCATCTTTTGTGATAATTAAGTTTTATCTTTCTAGTAATGTTTTTGAAGCTTTTCATTGGTTGTTTTTCCTTTATGTTTATCTGTGATTTTCCTACTTGAAATAATTCTCAGGGCGCGAGATGGGTCGTGCGCTGGAGCATCTTCAAAAGCTTGTCGTGAGAGGTTACGGAGGGAGAAATTAAATGATAGGCAAGCATTTTCTGTTATCCGACACATTTGTAATTCTATATGCTTCTTTTCTACTATCTTGTTTGATGATGATGATGATGGGGGGATAAGCCTAATGGTATTTATGATATGTGTATGAATTTATTTTGCTATTCAAACGGGAGTTCAAGGGTGCAATCACTTGTTTAGACGATGAGTCAATTCTTCTCTCAGTTGTTACAAGGACATATAGTCAAGTGTAAAGCTTTCCTTTCGTTGGTAATTTGTGCAGGTTTCTAGATTTAAGCATTGCTTTAGAACCTAGTAGACATACCAAAACTAACAAGCCGGCTATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGAACTCAAACAAACAAATGAAAAGTTGCGAGAAGAAGTGGAGAGTTTAAAGGTTAGTTATCGTGTAAGAAAGCTAATCAGCTTCATATTATCTTTGAGTGCTGCTAGAGTATCGATATTCTAATCTTGACATTACCTTTTTTCAATTAAAATTTTGCACTTTTCTTAATGTAAATAATTTGCAAATCATGAAGCTTTACTCTCTGTACCAAAGGCCGCTGCTTTTGATCTCATGCTTCCTTAATATTTTTATGTTTTCTTAAAGGAGCTATATCTTTAATGAATTCCCATTAGTGCAATTGTGCCTCTTGCATGAACTGCTTCTCAGTGCGATTATGCTATTTTTTGGTATAGCTATAGATCCCTCGCACACTTCTTGTGTTTGAGATTATTTTTTGATATATTTTCTTCAAACTTGTATTCTATGATTGTACCTAATACAAAAACTTTCATGATATTTAGTTAAATGTCAAAAAGGAAAATTTGAAGATATTGTGAAGTATTGGAATCAGTGTGTATTTTGTAATGAAGACATGGTATCCCCCCTCCCCACTCGAAAGTACTCTTCAGAATACCACTCCAAACAGTTAAAACTTAAAAGGAAAGTAAATCCATTTGTACTTGCATGCCATTGTCACAAACTAAAACAGATATTGATGCGTTTCAATGATTTGGTTATCCTATCTTCTTCTTTTAACATAAATTTTGGTTGCATAAATTGTTCAACAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATAATTCTAAAAGAAGACAAGGAAAAAATGGAACAACAGTTGAAATCTATAGCCATTCCATCTCCAGGGCTTATACCTGGTCATCCAGCTGCATATCATGCTGCTTCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATCCCAATGTGGCAATATCTTCCTCCATCAATACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCTTAGTTTATTTAATTTTTAACACCTTTTAAATAACTAGAGTAGACTTTCTCTCTTTCTTTCATCCATCCATCCGTCCATTTTTGCTTCACCAGCATGTAAGTATTTATCTCAACACATTTCCTGATTGTTCTTCAAAACAATTAGTTCCAAAATGGAACCACAATTTGCAAGGACTACTGTATACTCCTTTTTTTTATATATATATTTTCAACTCAATGTCGATTATCTACTTATTCTTCATTGGTCAAAAGTTAAAAGTGGATTGAGGTGACAGTTGGAAAAAATAGAGGAGACAATAGAAACTGTACGAGTAGGAAAGAAAATGTCTTTATAAATAGTAGGTATTGAAAGTGGTCAGTTGTAATTGTAAATAGAGTGAGAGCATCAACAAATGCAGGTGATAGTAGATTTAGCATTTATCTTAGTCTTCTTCTTTCATTAGCAGAAGCCCAGTCCCTATTGCAGCAGTTCACATTGAGAAAATAGTGTAGATTTCTCAGCTGTCTAATAGGAAATAGAATGCATCCTTTGAACAAACTTATTTAGAAACGATGCATCATTTCCAGTATGATAAACAGATCAAAATTGAGATAGATAATACATTACATGAGCAGATTAGTTGAGTCATTTTGAAAATTTATTTTTGTTCTGTTAGTAATTAGATTTGACTTTGTAATTTTAGTTGGACAGTCCACAGCCAAGAATGGAGAATATTCTCCCAATTTTCATGCTGAACAGTTTCTTTGGTATCATATAAACTATCGGTCAACAGTAGACCTGCTTTGAAAGCTAAAACAAATCTCAATGAACCATTTAATTTGTGTGGAATACCAAGGTTTTCCATACCAGATGACACTTGGAAATAGCAAACAGATAATACTTTCGAACAAGTTTCCTACTATATTTAGTTGATAAGGAAATTTGCTTAAGTGGGCAACCATCATGTCTTTATCTCATTTTGTTTATGCCATTTATTATGTTATTAGCTACTAGGGAGTAAGAAATATATTGCTCAGGATAATTATATAAATAGATAAATCATCTAATAGTCCACCAAAAATATCACTATAAGCCAATTTGGAAAGATGTAAAAAAACGGAAAGAAAAGAAAGAAAGATTAAAATGGATCCAAGCATGATTGGAAAATTGGAATTGAAAAAAAATGTGTAGTTTGTTATGATCAAATTTACATCCCCTGTGTCTGTGTCTGTGCTTTCAAAACTAAGAATGAAGTGGTGAGAAAACAAAAATTAGAGAGCAAATGAAAAGGAGTAAAGATGACTTGTTACAAAAAAAAAAAAAAAAAAAAAAAAGCGACCATTTGATATTGGCTGTACAAGTAATGGTTTTAACTGGAAGCCAATATCCAAACCATAATAAGAGAAGAAGTAGCAATAGTAATCCAGCTGAGGAATGCCAAGGCGACTGAGAGTTGGTATTTTTGGCATTCCCCTATAAAATTACAGCTTTTCAAGTCGTTAAAGTACAATATTGCAACTCCACTTGAAGAAGAAGCTGCTGCCAGTGTCAATGTTGCTGTAATC

mRNA sequence

TTTTTTTAAAAAAAAAGAAAAAGTAGAGAGCATATTCCATTTGGAGTGAATGGAAGAGAAGAATTATCTGTAAAAAACAGAAAAAGAAATTTGGAGTGGGGTTGTAGAATTTGGCGATGTTGGTGAGCACAGCGGAAGAGACAATGATCCCTCAACACGGCGGCGGTTAATCCATATTCCTTCTCCCAAAAAAGTTGAATTTTTTTACACGTGTTTCTTTATCACTGGATGTTCTAATCCCCCCTCATCGTTGTTTTTTTCTCTCCCAATTTTCCATTCCCTAATTTTCCCCAATCTCTTCGATGGCCTAATGGGACTGAAATTGGAAGAAGAGGTACGGCGTTGGACGACCCTTTGATTTCAGATCACATCACATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTCGATTGCTCCTTCTTCCCCGACGCCGACAATCTTATTAACCCTTCACTCCATCCTTTCTGGCCTCCTAATCATTCCAGGAGGGATTCTTTAGCGGATACTGATGTTTCAGCCGGTCATCTCGAATCTGAAGAAAATGATTGTTCCAGGAAGAGGGCGCGAGATGGGTCGTGCGCTGGAGCATCTTCAAAAGCTTGTCGTGAGAGGTTACGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTAAGCATTGCTTTAGAACCTAGTAGACATACCAAAACTAACAAGCCGGCTATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGAACTCAAACAAACAAATGAAAAGTTGCGAGAAGAAGTGGAGAGTTTAAAGGTTAGTTATCGTGTAAGAAAGCTAATCAGCTTCATATTATCTTTGAGTGCTGCTAGAGTATCGATATTCTAATCTTGACATTACCTTTTTTCAATTAAAATTTTGCACTTTTCTTAATGTAAATAATTTGCAAATCATGAAGCTTTACTCTCTGTACCAAAGGCCGCTGCTTTTGATCTCATGCTTCCTTAATATTTTTATGTTTTCTTAAAGGAGCTATATCTTTAATGAATTCCCATTAGTGCAATTGTGCCTCTTGCATGAACTGCTTCTCAGTGCGATTATGCTATTTTTTGGTATAGCTATAGATCCCTCGCACACTTCTTGTGTTTGAGATTATTTTTTGATATATTTTCTTCAAACTTGTATTCTATGATTGTACCTAATACAAAAACTTTCATGATATTTAGTTAAATGTCAAAAAGGAAAATTTGAAGATATTGTGAAGTATTGGAATCAGTGTGTATTTTGTAATGAAGACATGGTATCCCCCCTCCCCACTCGAAAGTACTCTTCAGAATACCACTCCAAACAGTTAAAACTTAAAAGGAAAGTAAATCCATTTGTACTTGCATGCCATTGTCACAAACTAAAACAGATATTGATGCGTTTCAATGATTTGGTTATCCTATCTTCTTCTTTTAACATAAATTTTGGTTGCATAAATTGTTCAACAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATAATTCTAAAAGAAGACAAGGAAAAAATGGAACAACAGTTGAAATCTATAGCCATTCCATCTCCAGGGCTTATACCTGGTCATCCAGCTGCATATCATGCTGCTTCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATCCCAATGTGGCAATATCTTCCTCCATCAATACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCTTAGTTTATTTAATTTTTAACACCTTTTAAATAACTAGAGTAGACTTTCTCTCTTTCTTTCATCCATCCATCCGTCCATTTTTGCTTCACCAGCATGTAAGTATTTATCTCAACACATTTCCTGATTGTTCTTCAAAACAATTAGTTCCAAAATGGAACCACAATTTGCAAGGACTACTGTATACTCCTTTTTTTTATATATATATTTTCAACTCAATGTCGATTATCTACTTATTCTTCATTGGTCAAAAGTTAAAAGTGGATTGAGGTGACAGTTGGAAAAAATAGAGGAGACAATAGAAACTGTACGAGTAGGAAAGAAAATGTCTTTATAAATAGTAGGTATTGAAAGTGGTCAGTTGTAATTGTAAATAGAGTGAGAGCATCAACAAATGCAGGTGATAGTAGATTTAGCATTTATCTTAGTCTTCTTCTTTCATTAGCAGAAGCCCAGTCCCTATTGCAGCAGTTCACATTGAGAAAATAGTGTAGATTTCTCAGCTGTCTAATAGGAAATAGAATGCATCCTTTGAACAAACTTATTTAGAAACGATGCATCATTTCCAGTATGATAAACAGATCAAAATTGAGATAGATAATACATTACATGAGCAGATTAGTTGAGTCATTTTGAAAATTTATTTTTGTTCTGTTAGTAATTAGATTTGACTTTGTAATTTTAGTTGGACAGTCCACAGCCAAGAATGGAGAATATTCTCCCAATTTTCATGCTGAACAGTTTCTTTGGTATCATATAAACTATCGGTCAACAGTAGACCTGCTTTGAAAGCTAAAACAAATCTCAATGAACCATTTAATTTGTGTGGAATACCAAGGTTTTCCATACCAGATGACACTTGGAAATAGCAAACAGATAATACTTTCGAACAAGTTTCCTACTATATTTAGTTGATAAGGAAATTTGCTTAAGTGGGCAACCATCATGTCTTTATCTCATTTTGTTTATGCCATTTATTATGTTATTAGCTACTAGGGAGTAAGAAATATATTGCTCAGGATAATTATATAAATAGATAAATCATCTAATAGTCCACCAAAAATATCACTATAAGCCAATTTGGAAAGATGTAAAAAAACGGAAAGAAAAGAAAGAAAGATTAAAATGGATCCAAGCATGATTGGAAAATTGGAATTGAAAAAAAATGTGTAGTTTGTTATGATCAAATTTACATCCCCTGTGTCTGTGTCTGTGCTTTCAAAACTAAGAATGAAGTGGTGAGAAAACAAAAATTAGAGAGCAAATGAAAAGGAGTAAAGATGACTTGTTACAAAAAAAAAAAAAAAAAAAAAAAAGCGACCATTTGATATTGGCTGTACAAGTAATGGTTTTAACTGGAAGCCAATATCCAAACCATAATAAGAGAAGAAGTAGCAATAGTAATCCAGCTGAGGAATGCCAAGGCGACTGAGAGTTGGTATTTTTGGCATTCCCCTATAAAATTACAGCTTTTCAAGTCGTTAAAGTACAATATTGCAACTCCACTTGAAGAAGAAGCTGCTGCCAGTGTCAATGTTGCTGTAATC

Coding sequence (CDS)

ATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTCGATTGCTCCTTCTTCCCCGACGCCGACAATCTTATTAACCCTTCACTCCATCCTTTCTGGCCTCCTAATCATTCCAGGAGGGATTCTTTAGCGGATACTGATGTTTCAGCCGGTCATCTCGAATCTGAAGAAAATGATTGTTCCAGGAAGAGGGCGCGAGATGGGTCGTGCGCTGGAGCATCTTCAAAAGCTTGTCGTGAGAGGTTACGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTAAGCATTGCTTTAGAACCTAGTAGACATACCAAAACTAACAAGCCGGCTATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGAACTCAAACAAACAAATGAAAAGTTGCGAGAAGAAGTGGAGAGTTTAAAGGTTAGTTATCGTGTAAGAAAGCTAATCAGCTTCATATTATCTTTGAGTGCTGCTAGAGTATCGATATTCTAA

Protein sequence

MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDCSRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEELKQTNEKLREEVESLKVSYRVRKLISFILSLSAARVSIF*

Homology

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BLAST of CsGy3G012200 vs. ExPASy Swiss-Prot
Match: Q8L467 (Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.7e-26
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 54  ESEENDCSRKRARDGSCA-GASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAIL 113
           E  ++DCSRKRAR GSC+ G  +KACRERLRREKLN+RF+DLS  LEP R  KT+KPAIL
Sbjct: 112 EHLDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAIL 171

Query: 114 DDAIRVLNQLKNEAEELKQTNEKLREEVESLK 145
           DDAIR+LNQL++EA +L++TN+KL EE++SLK
Sbjct: 172 DDAIRILNQLRDEALKLEETNQKLLEEIKSLK 203

[Close]

BLAST of CsGy3G012200 vs. ExPASy Swiss-Prot
Match: Q9LTC7 (Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-24
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 49  SAGHLESE-ENDCSRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTN 108
           S G ++ E E +CS KR R GSC+   +KACRE+LRREKLND+F+DLS  LEP R  KT+
Sbjct: 139 SVGAVKEEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTD 198

Query: 109 KPAILDDAIRVLNQLKNEAEELKQTNEKLREEVESLK 145
           K AILDDAIRV+NQL+ EA EL++TN+KL EE++SLK
Sbjct: 199 KSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLK 235

[Close]

BLAST of CsGy3G012200 vs. ExPASy Swiss-Prot
Match: Q9C682 (Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-17
Identity = 45/84 (53.57%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKR +  SC G++SKACRE+ RR++LND+F +LS  LEP R  KT+K AI++DAIR++N
Sbjct: 56  SRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVN 115

Query: 121 QLKNEAEELKQTNEKLREEVESLK 145
           Q ++EA++LK  N  L+E+++ LK
Sbjct: 116 QARDEAQKLKDLNSSLQEKIKELK 139

[Close]

BLAST of CsGy3G012200 vs. ExPASy Swiss-Prot
Match: Q9FH37 (Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-17
Identity = 51/115 (44.35%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 33  WP---PNHSRRDSLADTDVSAGHLESEENDCSRKRARDGSCAGASSKACRERLRREKLND 92
           WP   P     +S A  D SAG+ E+ +   S+KR R  S +  SSKACRE+ RR++LND
Sbjct: 30  WPVQQPIGVSSNSSAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQRRDRLND 89

Query: 93  RFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEELKQTNEKLREEVESLK 145
           +F++L   LEP    KT+K AIL DA+R++ QL+ EA++LK +N  L+++++ LK
Sbjct: 90  KFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELK 144

[Close]

BLAST of CsGy3G012200 vs. ExPASy Swiss-Prot
Match: Q8W2F2 (Transcription factor bHLH11 OS=Arabidopsis thaliana OX=3702 GN=BHLH11 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.8e-05
Identity = 37/113 (32.74%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 31  PFWPPNHSRRDSLADTDVSAGHLESEENDCSRKRARDGSCAGASSKACRERLRREKLNDR 90
           P  P   S  D   D+  S+     +    +         A  S KA RE+LRR+KL ++
Sbjct: 4   PMKPKTCSESDFADDSSASSSSSSGQNLRGAEMVVEVKKEAVCSQKAEREKLRRDKLKEQ 63

Query: 91  FLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEELKQTNEKLREEVESL 144
           FL+L  AL+P+R  K++K ++L D I++L  + N+ + LK   E L +E   L
Sbjct: 64  FLELGNALDPNR-PKSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESREL 115

[Close]

BLAST of CsGy3G012200 vs. NCBI nr
Match: XP_004134070.1 (transcription factor bHLH104 [Cucumis sativus] >KGN56869.1 hypothetical protein Csa_010203 [Cucumis sativus])

HSP 1 Score: 288 bits (736), Expect = 2.76e-96
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC 60
           MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC
Sbjct: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC 60

Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN
Sbjct: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120

Query: 121 QLKNEAEELKQTNEKLREEVESLK 144
           QLKNEAEELKQTNEKLREEVESLK
Sbjct: 121 QLKNEAEELKQTNEKLREEVESLK 144

[Close]

BLAST of CsGy3G012200 vs. NCBI nr
Match: XP_008438540.1 (PREDICTED: transcription factor bHLH104-like [Cucumis melo])

HSP 1 Score: 262 bits (669), Expect = 4.35e-86
Identity = 131/144 (90.97%), Postives = 137/144 (95.14%), Query Frame = 0


Query: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC 60
           MDPLEDSSCWDFLDCSFFPDADNLINPSL P WPPN SR+ SLADTDVSAG +ESEENDC
Sbjct: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLDPLWPPNDSRKGSLADTDVSAGRVESEENDC 60

Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKR RDGSCAG SSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN
Sbjct: 61  SRKRTRDGSCAGPSSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120

Query: 121 QLKNEAEELKQTNEKLREEVESLK 144
           QLKNEAE+LKQTNEKLREE+++LK
Sbjct: 121 QLKNEAEDLKQTNEKLREELKNLK 144

[Close]

BLAST of CsGy3G012200 vs. NCBI nr
Match: XP_038877371.1 (transcription factor bHLH104-like [Benincasa hispida])

HSP 1 Score: 245 bits (626), Expect = 1.46e-79
Identity = 128/144 (88.89%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC 60
           MDPLEDSSCWDFLDCSFF D DNLINPSL P W PN SR DS A+TDVSAG +ESEENDC
Sbjct: 1   MDPLEDSSCWDFLDCSFFVDGDNLINPSLDPLWLPNDSR-DSCAETDVSAGRVESEENDC 60

Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKRARDGSCAG +SKACRERLRREKLNDRFLDLSIALEPSR TKTNKPAILDDAIRVLN
Sbjct: 61  SRKRARDGSCAGPTSKACRERLRREKLNDRFLDLSIALEPSRPTKTNKPAILDDAIRVLN 120

Query: 121 QLKNEAEELKQTNEKLREEVESLK 144
           QLKNEAE+LKQTNEKLREEVE LK
Sbjct: 121 QLKNEAEDLKQTNEKLREEVECLK 143

[Close]

BLAST of CsGy3G012200 vs. NCBI nr
Match: KAA0049262.1 (transcription factor bHLH104-like protein [Cucumis melo var. makuwa] >TYK17295.1 transcription factor bHLH104-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 246 bits (629), Expect = 1.55e-79
Identity = 132/177 (74.58%), Postives = 137/177 (77.40%), Query Frame = 0


Query: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRD------------------- 60
           MDPLEDSSCWDFLDCSFFPDADNLINPSL P WPPN SR+                    
Sbjct: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLDPLWPPNDSRQSFYNTLFCILSFLFSFPSLF 60

Query: 61  --------------SLADTDVSAGHLESEENDCSRKRARDGSCAGASSKACRERLRREKL 120
                         SLADTDVSAG +ESEENDCSRKR RDGSCAG SSKACRERLRREKL
Sbjct: 61  VYTKHGFRFICRKGSLADTDVSAGRVESEENDCSRKRTRDGSCAGPSSKACRERLRREKL 120

Query: 121 NDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEELKQTNEKLREEVESLK 144
           NDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAE+LKQTNEKLREE+E+LK
Sbjct: 121 NDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEDLKQTNEKLREELENLK 177

[Close]

BLAST of CsGy3G012200 vs. NCBI nr
Match: XP_022979204.1 (transcription factor bHLH104-like [Cucurbita maxima])

HSP 1 Score: 224 bits (571), Expect = 3.33e-71
Identity = 118/144 (81.94%), Postives = 126/144 (87.50%), Query Frame = 0


Query: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC 60
           MDPLEDSSCWDFLD S F D DN+INPSL P WPP+ SR DS A TDVSAG +ESE+ND 
Sbjct: 1   MDPLEDSSCWDFLDYSLFVDGDNIINPSLDPLWPPSDSR-DSCAHTDVSAGRVESEQNDH 60

Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKRARDGSCAG +SKACRERLRRE+LNDRFLDLSIALEP R +K NKPAILDDAIRVLN
Sbjct: 61  SRKRARDGSCAGPTSKACRERLRRERLNDRFLDLSIALEPGRPSKNNKPAILDDAIRVLN 120

Query: 121 QLKNEAEELKQTNEKLREEVESLK 144
           QLK EAEELKQTNEKL+EEVE LK
Sbjct: 121 QLKTEAEELKQTNEKLQEEVECLK 143

[Close]

BLAST of CsGy3G012200 vs. ExPASy TrEMBL
Match: A0A0A0L755 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G135660 PE=4 SV=1)

HSP 1 Score: 288 bits (736), Expect = 1.34e-96
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC 60
           MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC
Sbjct: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC 60

Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN
Sbjct: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120

Query: 121 QLKNEAEELKQTNEKLREEVESLK 144
           QLKNEAEELKQTNEKLREEVESLK
Sbjct: 121 QLKNEAEELKQTNEKLREEVESLK 144

[Close]

BLAST of CsGy3G012200 vs. ExPASy TrEMBL
Match: A0A1S3AXA4 (transcription factor bHLH104-like OS=Cucumis melo OX=3656 GN=LOC103483605 PE=4 SV=1)

HSP 1 Score: 262 bits (669), Expect = 2.10e-86
Identity = 131/144 (90.97%), Postives = 137/144 (95.14%), Query Frame = 0


Query: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC 60
           MDPLEDSSCWDFLDCSFFPDADNLINPSL P WPPN SR+ SLADTDVSAG +ESEENDC
Sbjct: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLDPLWPPNDSRKGSLADTDVSAGRVESEENDC 60

Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKR RDGSCAG SSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN
Sbjct: 61  SRKRTRDGSCAGPSSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120

Query: 121 QLKNEAEELKQTNEKLREEVESLK 144
           QLKNEAE+LKQTNEKLREE+++LK
Sbjct: 121 QLKNEAEDLKQTNEKLREELKNLK 144

[Close]

BLAST of CsGy3G012200 vs. ExPASy TrEMBL
Match: A0A5A7U0F5 (Transcription factor bHLH104-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001490 PE=4 SV=1)

HSP 1 Score: 246 bits (629), Expect = 7.50e-80
Identity = 132/177 (74.58%), Postives = 137/177 (77.40%), Query Frame = 0


Query: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRD------------------- 60
           MDPLEDSSCWDFLDCSFFPDADNLINPSL P WPPN SR+                    
Sbjct: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLDPLWPPNDSRQSFYNTLFCILSFLFSFPSLF 60

Query: 61  --------------SLADTDVSAGHLESEENDCSRKRARDGSCAGASSKACRERLRREKL 120
                         SLADTDVSAG +ESEENDCSRKR RDGSCAG SSKACRERLRREKL
Sbjct: 61  VYTKHGFRFICRKGSLADTDVSAGRVESEENDCSRKRTRDGSCAGPSSKACRERLRREKL 120

Query: 121 NDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEELKQTNEKLREEVESLK 144
           NDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAE+LKQTNEKLREE+E+LK
Sbjct: 121 NDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEDLKQTNEKLREELENLK 177

[Close]

BLAST of CsGy3G012200 vs. ExPASy TrEMBL
Match: A0A6J1IW19 (transcription factor bHLH104-like OS=Cucurbita maxima OX=3661 GN=LOC111479009 PE=4 SV=1)

HSP 1 Score: 224 bits (571), Expect = 1.61e-71
Identity = 118/144 (81.94%), Postives = 126/144 (87.50%), Query Frame = 0


Query: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC 60
           MDPLEDSSCWDFLD S F D DN+INPSL P WPP+ SR DS A TDVSAG +ESE+ND 
Sbjct: 1   MDPLEDSSCWDFLDYSLFVDGDNIINPSLDPLWPPSDSR-DSCAHTDVSAGRVESEQNDH 60

Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKRARDGSCAG +SKACRERLRRE+LNDRFLDLSIALEP R +K NKPAILDDAIRVLN
Sbjct: 61  SRKRARDGSCAGPTSKACRERLRRERLNDRFLDLSIALEPGRPSKNNKPAILDDAIRVLN 120

Query: 121 QLKNEAEELKQTNEKLREEVESLK 144
           QLK EAEELKQTNEKL+EEVE LK
Sbjct: 121 QLKTEAEELKQTNEKLQEEVECLK 143

[Close]

BLAST of CsGy3G012200 vs. ExPASy TrEMBL
Match: A0A6J1EE84 (transcription factor bHLH104-like OS=Cucurbita moschata OX=3662 GN=LOC111431762 PE=4 SV=1)

HSP 1 Score: 218 bits (556), Expect = 3.06e-69
Identity = 116/144 (80.56%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 1   MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDC 60
           MDPLEDSSCWDFLD S F D DN+INPSL P  PP+ SR DS A TDVSAG +ESE+ND 
Sbjct: 1   MDPLEDSSCWDFLDYSLFVDGDNIINPSLDPLCPPSDSR-DSCAHTDVSAGRVESEQNDH 60

Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKRARDGSCAG +SKACRERLRRE+LNDRFLDLS+ALEP R +K NKPAILDDAIRVLN
Sbjct: 61  SRKRARDGSCAGPTSKACRERLRRERLNDRFLDLSLALEPGRPSKNNKPAILDDAIRVLN 120

Query: 121 QLKNEAEELKQTNEKLREEVESLK 144
           QLK EAEELKQTNEKL+EEVE LK
Sbjct: 121 QLKTEAEELKQTNEKLQEEVECLK 143

[Close]

BLAST of CsGy3G012200 vs. TAIR 10
Match: AT4G14410.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 4.7e-27
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 54  ESEENDCSRKRARDGSCA-GASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAIL 113
           E  ++DCSRKRAR GSC+ G  +KACRERLRREKLN+RF+DLS  LEP R  KT+KPAIL
Sbjct: 112 EHLDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAIL 171

Query: 114 DDAIRVLNQLKNEAEELKQTNEKLREEVESLK 145
           DDAIR+LNQL++EA +L++TN+KL EE++SLK
Sbjct: 172 DDAIRILNQLRDEALKLEETNQKLLEEIKSLK 203

[Close]

BLAST of CsGy3G012200 vs. TAIR 10
Match: AT4G14410.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 4.7e-27
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 54  ESEENDCSRKRARDGSCA-GASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAIL 113
           E  ++DCSRKRAR GSC+ G  +KACRERLRREKLN+RF+DLS  LEP R  KT+KPAIL
Sbjct: 106 EHLDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAIL 165

Query: 114 DDAIRVLNQLKNEAEELKQTNEKLREEVESLK 145
           DDAIR+LNQL++EA +L++TN+KL EE++SLK
Sbjct: 166 DDAIRILNQLRDEALKLEETNQKLLEEIKSLK 197

[Close]

BLAST of CsGy3G012200 vs. TAIR 10
Match: AT3G23210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-25
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 49  SAGHLESE-ENDCSRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTN 108
           S G ++ E E +CS KR R GSC+   +KACRE+LRREKLND+F+DLS  LEP R  KT+
Sbjct: 139 SVGAVKEEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTD 198

Query: 109 KPAILDDAIRVLNQLKNEAEELKQTNEKLREEVESLK 145
           K AILDDAIRV+NQL+ EA EL++TN+KL EE++SLK
Sbjct: 199 KSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLK 235

[Close]

BLAST of CsGy3G012200 vs. TAIR 10
Match: AT1G51070.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 45/84 (53.57%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKR +  SC G++SKACRE+ RR++LND+F +LS  LEP R  KT+K AI++DAIR++N
Sbjct: 56  SRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVN 115

Query: 121 QLKNEAEELKQTNEKLREEVESLK 145
           Q ++EA++LK  N  L+E+++ LK
Sbjct: 116 QARDEAQKLKDLNSSLQEKIKELK 139

[Close]

BLAST of CsGy3G012200 vs. TAIR 10
Match: AT1G51070.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 45/84 (53.57%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 61  SRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLN 120
           SRKR +  SC G++SKACRE+ RR++LND+F +LS  LEP R  KT+K AI++DAIR++N
Sbjct: 122 SRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVN 181

Query: 121 QLKNEAEELKQTNEKLREEVESLK 145
           Q ++EA++LK  N  L+E+++ LK
Sbjct: 182 QARDEAQKLKDLNSSLQEKIKELK 205

The following BLAST results are available for this feature:

BLAST of CsGy3G012200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L467	6.7e-26	68.48	Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=...	[more]
Q9LTC7	2.8e-24	62.89	Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1	[more]
Q9C682	1.9e-17	53.57	Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=...	[more]
Q9FH37	3.3e-17	44.35	Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1	[more]
Q8W2F2	3.8e-05	32.74	Transcription factor bHLH11 OS=Arabidopsis thaliana OX=3702 GN=BHLH11 PE=2 SV=2	[more]

BLAST of CsGy3G012200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134070.1	2.76e-96	100.00	transcription factor bHLH104 [Cucumis sativus] >KGN56869.1 hypothetical protein ...	[more]
XP_008438540.1	4.35e-86	90.97	PREDICTED: transcription factor bHLH104-like [Cucumis melo]	[more]
XP_038877371.1	1.46e-79	88.89	transcription factor bHLH104-like [Benincasa hispida]	[more]
KAA0049262.1	1.55e-79	74.58	transcription factor bHLH104-like protein [Cucumis melo var. makuwa] >TYK17295.1...	[more]
XP_022979204.1	3.33e-71	81.94	transcription factor bHLH104-like [Cucurbita maxima]	[more]

BLAST of CsGy3G012200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L755	1.34e-96	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G135660 PE=4 S...	[more]
A0A1S3AXA4	2.10e-86	90.97	transcription factor bHLH104-like OS=Cucumis melo OX=3656 GN=LOC103483605 PE=4 S...	[more]
A0A5A7U0F5	7.50e-80	74.58	Transcription factor bHLH104-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1IW19	1.61e-71	81.94	transcription factor bHLH104-like OS=Cucurbita maxima OX=3661 GN=LOC111479009 PE...	[more]
A0A6J1EE84	3.06e-69	80.56	transcription factor bHLH104-like OS=Cucurbita moschata OX=3662 GN=LOC111431762 ...	[more]

BLAST of CsGy3G012200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14410.1	4.7e-27	68.48	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G14410.2	4.7e-27	68.48	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G23210.1	2.0e-25	62.89	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G51070.1	1.4e-18	53.57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G51070.2	1.4e-18	53.57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..73
None	No IPR available	PANTHER	PTHR46133:SF9	TRANSCRIPTION FACTOR BHLH104	coord: 1..145
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 77..128 e-value: 6.0E-8 score: 42.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 75..122 e-value: 1.2E-7 score: 31.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 71..122 score: 11.839272
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 74..149 e-value: 2.6E-12 score: 48.7
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 74..142
IPR044818	Transcription factor ILR3-like	PANTHER	PTHR46133	BHLH TRANSCRIPTION FACTOR	coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G012200.2	CsGy3G012200.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity