CsGy2G026000 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G026000
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	high mobility group B protein 3-like
Location	Gy14Chr2: 33532681 .. 33534121 (+)
RNA-Seq Expression	CsGy2G026000
Synteny	CsGy2G026000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCTCTCAGGAACGCCGTCGTCACTCACAAGAAACCCAACCCACAGTAATCTTCTCCTTCTTCACGATGATTTTCAGCGTCTTCTTTTTGCTTTTCATCTTCAATAAGTTATTACATTCTTTTGTTTCCATTTTTTTTATGTAAGTTTTTGCATCCTGTATGGTTCGTTTCCTTTCTTCAACTTTGATTCTATGCAATTTTCATCTCTCTATTTTTTCTCTTCTTATGCTTTCATTTTTCTTTCTAATTTATTTTTATTTTCTTTTGTAATGTTTCGCCTCTTTGTTTGTTCCTAACCGAGTTGAATTTTACAGCCTGCGTTGTGTACTTCTTGTATGTTTTTAATAGTTTTGCTTTCCTATTACGCAAGGTTTCTTCATTTCTCTGCATACCTGAACTACTCTAATGATATTATTCATTTACTCTGTATTTTAACTCTTTTAGTTTTCCTACGTTTTTGGCTATAATACTAAATTGAATATACTCCTAAAGCTTTTATCATTGATCCGCTTTTTGAAGGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGCAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGACATTCTTCGTTTTCATGTAAGTACAGTTTATAATTGAGGCTGCTTCCGTTTTGAAAGTCGTTCATACATTCTAGTTTTCATTAGATTTTTCCATTCTGATTTCGAGTTCTTGCTTGGGAAATGATAGGGAGGAATTTAGAAAGACGTACAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTAAGATCTTATACTGTTGTTTTGATCAGCATTACTTTCTTATTATTCCTCCATATTTATGTTTTTAGATATGGCTGAGTGGAGGATCGGAGGACTTCTTGAGTTAGCTAGATTTTGTTATTTGCGTTTAACTGTGTTTTGTTAATTTGCAGGTCGGCAAAGTTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGTAAGACTCTCTTATTTTCGTACTATTTTCATAGAACACTAATTGGAGACTATCAACAATAAATGACTAAGGAATAAGATCGGAGGTTATCAGTTCTTCCACTTTAATTGAAGATCGTTTCACGTTTTGTTCTCAGTATTCAATTCGAGACTAATTGATGATACAAATCTGTGGTAATCGTGTCTCTTCCTCAGGAAAAAGCTCCGTATGCTGAAAAAGCTTTGAAAAGAAAGGCAGAGTATGAAATAGCTCTTGAAGCATACAAGAACAACCTCGTAATTAAATTGTTCCCACTCTATCTCTACTTTCACTCTTTCTCCTTCACTTCGTCAGAAGATGATCACCACGGTTTTATTGATCATCGAATCTCTCTTCTCTCTAACATCTCATGGTTCACAGAATTGCCCTCAGAATCACAGAATGCCAACAGAATCACAGAAATCAACCTCTGA

mRNA sequence

ATGAGAGCTCTCAGGAACGCCGTCGTCACTCACAAGAAACCCAACCCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGCAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGACATTCTTCGTTTTCATGGAGGAATTTAGAAAGACGTACAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGTTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTATGCTGAAAAAGCTTTGAAAAGAAAGGCAGAGTATGAAATAGCTCTTGAAGCATACAAGAACAACCTCGTAATTAAATTGTTCCCACTCTATCTCTACTTTCACTCTTTCTCCTTCACTTCGTCAGAAGATGATCACCACGGTTTTATTGATCATCGAATCTCTCTTCTCTCTAACATCTCATGGTTCACAGAATTGCCCTCAGAATCACAGAATGCCAACAGAATCACAGAAATCAACCTCTGA

Coding sequence (CDS)

ATGAGAGCTCTCAGGAACGCCGTCGTCACTCACAAGAAACCCAACCCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGCAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGACATTCTTCGTTTTCATGGAGGAATTTAGAAAGACGTACAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGTTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTATGCTGAAAAAGCTTTGAAAAGAAAGGCAGAGTATGAAATAGCTCTTGAAGCATACAAGAACAACCTCGTAATTAAATTGTTCCCACTCTATCTCTACTTTCACTCTTTCTCCTTCACTTCGTCAGAAGATGATCACCACGGTTTTATTGATCATCGAATCTCTCTTCTCTCTAACATCTCATGGTTCACAGAATTGCCCTCAGAATCACAGAATGCCAACAGAATCACAGAAATCAACCTCTGA

Protein sequence

MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKLFPLYLYFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL*

Homology

[Close]

BLAST of CsGy2G026000 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-21
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 20  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWK 79
           K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 80  SMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 112
           SMS AEKAPY EKA KRKAEYE  ++AY  NL
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125

[Close]

BLAST of CsGy2G026000 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.5e-21
Identity = 54/94 (57.45%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEK 77
           KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  K+   VGK GGEK
Sbjct: 14  KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEK 73

Query: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 112
           WKS+SD+EKAPY  KA KRK EYE  ++AY   L
Sbjct: 74  WKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL 107

[Close]

BLAST of CsGy2G026000 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-20
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 12  KKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVG 71
           K  N   +K++ A+ K TK   KD N PKRP + FFVFME+FRKTYKE+ P+ K+  VVG
Sbjct: 9   KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVG 68

Query: 72  KVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAY 108
           K GG+KWK ++ AEKAP+  KA KRK EYE  L+AY
Sbjct: 69  KAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAY 104

[Close]

BLAST of CsGy2G026000 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.1e-19
Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 30  KSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPY 89
           K+  KD N PKRPA+ FFVFME+FR+T+K++ P  K+   VGK  G+KWKS+SD+EKAPY
Sbjct: 29  KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88

Query: 90  AEKALKRKAEYEIALEAYKNNL 112
             KA KRK EYE  ++AY   L
Sbjct: 89  VAKAEKRKVEYEKNIKAYNKKL 110

[Close]

BLAST of CsGy2G026000 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.2e-18
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 23  KAEMKSTKSKK-KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSM 82
           K   K  K K+ KD N PKRP + FFVFM +FR+ YK+  P+ K+   VGK  GE+WKS+
Sbjct: 28  KGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSL 87

Query: 83  SDAEKAPYAEKALKRKAEYEIALEAYKNNL 112
           S+ EKAPY ++ALK+K EYEI L+AY   L
Sbjct: 88  SEEEKAPYVDRALKKKEEYEITLQAYNKKL 117

[Close]

BLAST of CsGy2G026000 vs. NCBI nr
Match: XP_011650215.2 (high mobility group B protein 3-like isoform X1 [Cucumis sativus] >KAE8652290.1 hypothetical protein Csa_021885 [Cucumis sativus])

HSP 1 Score: 327 bits (839), Expect = 8.40e-113
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ 60
           MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ
Sbjct: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ 60

Query: 61  FPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKLFPLYL 120
           FPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKLFPLYL
Sbjct: 61  FPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKLFPLYL 120

Query: 121 YFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL 169
           YFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL
Sbjct: 121 YFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL 169

[Close]

BLAST of CsGy2G026000 vs. NCBI nr
Match: XP_031737208.1 (high mobility group B protein 3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 212 bits (540), Expect = 1.23e-67
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ 60
           MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ
Sbjct: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ 60

Query: 61  FPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 111
           FPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
Sbjct: 61  FPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 111

[Close]

BLAST of CsGy2G026000 vs. NCBI nr
Match: XP_008455870.1 (PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 198 bits (503), Expect = 6.00e-62
Identity = 104/110 (94.55%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ 60
           MRALRNAVVTHKKPN QKLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN 110
           FPDAKAGPVVGK GGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN 110

[Close]

BLAST of CsGy2G026000 vs. NCBI nr
Match: XP_008455869.1 (PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 191 bits (484), Expect = 6.03e-59
Identity = 104/118 (88.14%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ 60
           MRALRNAVVTHKKPN QKLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKVGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNN 110
           FPDAKAGPVVGK GGEKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNN
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNN 118

[Close]

BLAST of CsGy2G026000 vs. NCBI nr
Match: KAG6604859.1 (High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181 bits (459), Expect = 6.75e-55
Identity = 97/121 (80.17%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTY 60
           MRAL+NAVVTHKKPN + LK+RKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKLFP 118
           KE+FPDAKAGP VGK GGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YK  LV   F 
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLVTVFFS 120

[Close]

BLAST of CsGy2G026000 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 198 bits (503), Expect = 2.90e-62
Identity = 104/110 (94.55%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ 60
           MRALRNAVVTHKKPN QKLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN 110
           FPDAKAGPVVGK GGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN 110

[Close]

BLAST of CsGy2G026000 vs. ExPASy TrEMBL
Match: A0A1S3C1W5 (HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 191 bits (484), Expect = 2.92e-59
Identity = 104/118 (88.14%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ 60
           MRALRNAVVTHKKPN QKLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKVGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNN 110
           FPDAKAGPVVGK GGEKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNN
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNN 118

[Close]

BLAST of CsGy2G026000 vs. ExPASy TrEMBL
Match: A0A6J1I4V5 (high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891 PE=3 SV=1)

HSP 1 Score: 177 bits (449), Expect = 5.19e-54
Identity = 94/114 (82.46%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTY 60
           MRAL+NAVVTHKKPN + LK+RKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 111
           KE+FPDAKAGP VGK GGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YK  L
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114

[Close]

BLAST of CsGy2G026000 vs. ExPASy TrEMBL
Match: A0A6J1G5W3 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451070 PE=3 SV=1)

HSP 1 Score: 177 bits (449), Expect = 5.19e-54
Identity = 94/114 (82.46%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTY 60
           MRAL+NAVVTHKKPN + LK+RKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 111
           KE+FPDAKAGP VGK GGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YK  L
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114

[Close]

BLAST of CsGy2G026000 vs. ExPASy TrEMBL
Match: A0A6J1CIL2 (high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011298 PE=3 SV=1)

HSP 1 Score: 170 bits (431), Expect = 2.65e-51
Identity = 91/114 (79.82%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTY 60
           MRA RNAV+  KKPN + LKQRKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+
Sbjct: 1   MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 111
           KE+FPDAKAGP VGK GGEKWKS+SDAEKAPYAEKAL RK EY IALEAYK  L
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL 114

[Close]

BLAST of CsGy2G026000 vs. TAIR 10
Match: AT1G20696.2 (high mobility group B3 )

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23
Identity = 57/98 (58.16%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEK 77
           KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  K+   VGK GGEK
Sbjct: 14  KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEK 73

Query: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKL 116
           WKS+SD+EKAPY  KA KRK EYE  ++AY   LVI L
Sbjct: 74  WKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLVIAL 111

[Close]

BLAST of CsGy2G026000 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 104.4 bits (259), Expect = 9.4e-23
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 20  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWK 79
           K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 80  SMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 112
           SMS AEKAPY EKA KRKAEYE  ++AY  NL
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125

[Close]

BLAST of CsGy2G026000 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 104.4 bits (259), Expect = 9.4e-23
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 20  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWK 79
           K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 80  SMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 112
           SMS AEKAPY EKA KRKAEYE  ++AY  NL
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125

[Close]

BLAST of CsGy2G026000 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 104.4 bits (259), Expect = 9.4e-23
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 20  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWK 79
           K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 80  SMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 112
           SMS AEKAPY EKA KRKAEYE  ++AY  NL
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125

[Close]

BLAST of CsGy2G026000 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 104.4 bits (259), Expect = 9.4e-23
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 20  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWK 79
           K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 80  SMSDAEKAPYAEKALKRKAEYEIALEAYKNNL 112
           SMS AEKAPY EKA KRKAEYE  ++AY  NL
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125

The following BLAST results are available for this feature:

BLAST of CsGy2G026000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	1.3e-21	58.70	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P93047	8.5e-21	57.45	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40619	1.5e-20	56.25	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
O49596	6.1e-19	57.32	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40620	5.2e-18	53.33	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of CsGy2G026000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650215.2	8.40e-113	100.00	high mobility group B protein 3-like isoform X1 [Cucumis sativus] >KAE8652290.1 ...	[more]
XP_031737208.1	1.23e-67	100.00	high mobility group B protein 3-like isoform X2 [Cucumis sativus]	[more]
XP_008455870.1	6.00e-62	94.55	PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo]	[more]
XP_008455869.1	6.03e-59	88.14	PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo]	[more]
KAG6604859.1	6.75e-55	80.17	High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CsGy2G026000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2L9	2.90e-62	94.55	high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C1W5	2.92e-59	88.14	HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1	[more]
A0A6J1I4V5	5.19e-54	82.46	high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891...	[more]
A0A6J1G5W3	5.19e-54	82.46	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1CIL2	2.65e-51	79.82	high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of CsGy2G026000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.2	3.2e-23	58.16	high mobility group B3	[more]
AT3G51880.1	9.4e-23	58.70	high mobility group B1	[more]
AT3G51880.2	9.4e-23	58.70	high mobility group B1	[more]
AT3G51880.3	9.4e-23	58.70	high mobility group B1	[more]
AT3G51880.4	9.4e-23	58.70	high mobility group B1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..39
None	No IPR available	PANTHER	PTHR46261:SF10	HIGH MOBILITY GROUP B PROTEIN 3-LIKE	coord: 1..111
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 39..105 e-value: 4.106E-17 score: 69.5789
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 38..109 e-value: 1.3E-22 score: 91.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 39..108 e-value: 1.9E-18 score: 66.7
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 39..108 score: 17.987949
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 20..114 e-value: 3.8E-23 score: 83.7
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 30..111
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G026000.2	CsGy2G026000.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin