CsGy2G024020 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G024020
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Location	Gy14Chr2: 31803026 .. 31805404 (-)
RNA-Seq Expression	CsGy2G024020
Synteny	CsGy2G024020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAAGGAATTTACCGTATAAATATATTGTTTTAAATAAACGCTGAAGAATATTGGAGAGGGGTTTGGGCAAAACCTCTCGGAACCCTAGAACGTGAAGTCGGAGGCATCGTCGGTCGGCAACAGAGGAGAGTGAAGATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTTAGCGATGGAGAACTATCTTCAATTTTTGAGTTTAAAATTGCGATTTCCTGTTCTTCATGTCGTCTGTGCCACTGTTTTTCCGATTGCTTGCACACGAGAACAATATACTTTTCATTTAGTCTCAACTTCTTATTGTGATTTGGTTTATATTTTTTCAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGGTAAGGAAGCAACACCACTGTTGTTCTTCCTTTTCTTCTTCTTCTTCTTATTATTATTTTATGATTGATTGCTAGTAAACAAAACTATACCCTTTTCTCTTGTATCAGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAACAGTAATCCCTCTCTTTCTCTCTCTTTTTATTCATTCATGCTTGAGTTGTTTGATTGTCGACGAACAATTTTGCTGCCCTCTTACGCTTTAATTGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGATTTTTCACGTGTAGGCGTATTGGCTTTCTGATGGTGTTTGTGTTCAGTTAAGAGTAAAGAAAAACTACCGGAGGGCTCGAGTTAAGCTATGTCTTGGCATTCTAGTTTGTTTAGTTATGGATTCATACGGACTCAAGTACTTGATCTTCTACGTGTTTGTTAGTATTTAGGAGTTGTATATTAGAGCCGTGTAGCATTTTCCATAGATGCAGTTGATTTTCATTCAGGCAGCATTGACGTTTTTGTGGTGTTTGGATCCAGTTAAGAGAAAACAAAATTTATACGATCATGTAGTGCAGGATTTGATTTAAGCTATATCTTAGTGTCCTGGTTTATTTACTTATTGATTCATACGAACCCAAGTATTTAATCTTCTATGTGTTTATTAGGATTTAGGAGTTATATGTAAGAGCCGTGTAGCATTTTCCATAGGATGCAGTCATTCAGTCAGTATTGACTTTTTTGTGGTGTTTGCATTCAGTTAAGAGAAAACAAGAACTATGGGAACATTCAGTTCAGGACTTGAGTTGAGCTATATATTGGTGCCCAGTTTGTTTGCTTATTGATTCATACGAGCCCAAGTATTTAGTCTTGTATGTGTTTATTAGTTTTTAGGAGTACTGTAAGGTGTATTCTACTTTAAGGATGTAATTACTTTGGTTATTGATTTCCATTCAGTTATCGTTTGACGTATGGATGGTCTTTGCATCCAGCTAAGAGAAAAGGAAAAGTATAGCAATATGTAATTGTAGAACTTGGTGTCCCAATTTGTTTACCTATTGATCCATACGAACCAAAGTATTTTATCTTCTGTGTTTTTTTTTAGTTTTTAGTGTTTCTATATGAAATCCGTATGTCATAGGATGTATTGATTTCCTTCAGATGCTATCTAGTCGTTTCTATGGTGTTTGCATTCAGTTTAGAGAAAAGAAAAACTATAGGAATATTCAGTGCAGGACTTAAAGTTGTATCTTGGTGTCCCAGTTTCTTTACTTATTTGAATCATACTAGCCTAAATATTTAATCTTCTATGGATCAATTAGTTTTTAGGAGTTATAAACCTACAGGACTGTGTCCTTCAGTTCTACAGTTTTTTCGAGTACTACAAACCATTTTTGCATGGTGTAGTTAGTTGTGCTTGGAAGGATTTTTGTTCACTTAAGTGGCTGTGGATTGCTGTCCTTGTCTGTATTATTGTATCTACAATTATCAGATGTGTTTGTGTTGTGTCAGTTTCTCACTTTCAATTAATGGAAATGAAAGTAAATTGATAATGGTATAAAGGATGGTGTTTTCTCGGTGGTGTGGTTTTGATATGATGTTTGACTTAGAAATGATCTTTAGACTAATTAGGACTCACTGTTTTTCTTTTCCGTTCAAGAACTATGTGGGAGTGGAGATTGGGATTGAACCGTTGATCTCTAAGAATAGAGGCTAATATCGCTTTCATAAATTGCATGCATTTGTGTGGTAAATTGTGTCATATACAGTAAACTAAAGTGACTTACCAAGGATGTCAATTGAGATAAAATTATTTTTGCTATTTTCAAAGTCACTTTAAAAATTATTTGTCCTTCAAAGCCAATTTGGCTTTTTAAATAGTATGAAAATTACAAAATTGATTTTGAGT

mRNA sequence

GTAAAAGGAATTTACCGTATAAATATATTGTTTTAAATAAACGCTGAAGAATATTGGAGAGGGGTTTGGGCAAAACCTCTCGGAACCCTAGAACGTGAAGTCGGAGGCATCGTCGGTCGGCAACAGAGGAGAGTGAAGATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAACAGTAATCCCTCTCTTTCTCTCTCTTTTTATTCATTCATGCTTGAGTTGTTTGATTGTCGACGAACAATTTTGCTGCCCTCTTACGCTTTAATTGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGATTTTTCACGTGTAGGCGTATTGGCTTTCTGATGGTGTTTGTGTTCAGTTAAGAGTAAAGAAAAACTACCGGAGGGCTCGAGTTAAGCTATGTCTTGGCATTCTAGTTTGTTTAGTTATGGATTCATACGGACTCAAGTACTTGATCTTCTACGTGTTTGTTAGTATTTAGGAGTTGTATATTAGAGCCGTGTAGCATTTTCCATAGATGCAGTTGATTTTCATTCAGGCAGCATTGACGTTTTTGTGGTGTTTGGATCCAGTTAAGAGAAAACAAAATTTATACGATCATGTAGTGCAGGATTTGATTTAAGCTATATCTTAGTGTCCTGGTTTATTTACTTATTGATTCATACGAACCCAAGTATTTAATCTTCTATGTGTTTATTAGGATTTAGGAGTTATATGTAAGAGCCGTGTAGCATTTTCCATAGGATGCAGTCATTCAGTCAGTATTGACTTTTTTGTGGTGTTTGCATTCAGTTAAGAGAAAACAAGAACTATGGGAACATTCAGTTCAGGACTTGAGTTGAGCTATATATTGGTGCCCAGTTTGTTTGCTTATTGATTCATACGAGCCCAAGTATTTAGTCTTGTATGTGTTTATTAGTTTTTAGGAGTACTGTAAGGTGTATTCTACTTTAAGGATGTAATTACTTTGGTTATTGATTTCCATTCAGTTATCGTTTGACGTATGGATGGTCTTTGCATCCAGCTAAGAGAAAAGGAAAAGTATAGCAATATGTAATTGTAGAACTTGGTGTCCCAATTTGTTTACCTATTGATCCATACGAACCAAAGTATTTTATCTTCTGTGTTTTTTTTTAGTTTTTAGTGTTTCTATATGAAATCCGTATGTCATAGGATGTATTGATTTCCTTCAGATGCTATCTAGTCGTTTCTATGGTGTTTGCATTCAGTTTAGAGAAAAGAAAAACTATAGGAATATTCAGTGCAGGACTTAAAGTTGTATCTTGGTGTCCCAGTTTCTTTACTTATTTGAATCATACTAGCCTAAATATTTAATCTTCTATGGATCAATTAGTTTTTAGGAGTTATAAACCTACAGGACTGTGTCCTTCAGTTCTACAGTTTTTTCGAGTACTACAAACCATTTTTGCATGGTGTAGTTAGTTGTGCTTGGAAGGATTTTTGTTCACTTAAGTGGCTGTGGATTGCTGTCCTTGTCTGTATTATTGTATCTACAATTATCAGATGTGTTTGTGTTGTGTCAGTTTCTCACTTTCAATTAATGGAAATGAAAGTAAATTGATAATGGTATAAAGGATGGTGTTTTCTCGGTGGTGTGGTTTTGATATGATGTTTGACTTAGAAATGATCTTTAGACTAATTAGGACTCACTGTTTTTCTTTTCCGTTCAAGAACTATGTGGGAGTGGAGATTGGGATTGAACCGTTGATCTCTAAGAATAGAGGCTAATATCGCTTTCATAAATTGCATGCATTTGTGTGGTAAATTGTGTCATATACAGTAAACTAAAGTGACTTACCAAGGATGTCAATTGAGATAAAATTATTTTTGCTATTTTCAAAGTCACTTTAAAAATTATTTGTCCTTCAAAGCCAATTTGGCTTTTTAAATAGTATGAAAATTACAAAATTGATTTTGAGT

Coding sequence (CDS)

ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAACAGTAATCCCTCTCTTTCTCTCTCTTTTTATTCATTCATGCTTGAGTTGTTTGATTGTCGACGAACAATTTTGCTGCCCTCTTACGCTTTAATTGCTTTCTGTTTCAGCTCTGGATAA

Protein sequence

MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLSLSFYSFMLELFDCRRTILLPSYALIAFCFSSG*

Homology

[Close]

BLAST of CsGy2G024020 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-30
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNS 65
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of CsGy2G024020 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.0e-30
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNS 65
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of CsGy2G024020 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.0e-30
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNS 65
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of CsGy2G024020 vs. ExPASy Swiss-Prot
Match: Q55AB6 (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-27
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60

Query: 61 NY 63
          NY
Sbjct: 61 NY 62

[Close]

BLAST of CsGy2G024020 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.2e-27
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 61 NY 63
          NY
Sbjct: 61 NY 62

[Close]

BLAST of CsGy2G024020 vs. NCBI nr
Match: KAA0057130.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa] >TYJ97111.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (421), Expect = 1.85e-51
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSLSLSFY--SFMLELFDC 82
          NYNSNPSLSL F   SFMLELFDC
Sbjct: 61 NYNSNPSLSLFFLFCSFMLELFDC 84

[Close]

BLAST of CsGy2G024020 vs. NCBI nr
Match: CDM84745.1 (unnamed protein product [Triticum aestivum])

HSP 1 Score: 145 bits (366), Expect = 2.35e-42
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSLSLSFYSFMLEL 79
          NYNS   L  +F S++L L
Sbjct: 61 NYNSKLMLLYNFVSYILLL 79

[Close]

BLAST of CsGy2G024020 vs. NCBI nr
Match: CAF2153035.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 144 bits (362), Expect = 2.80e-42
Identity = 66/81 (81.48%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDA+GLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDAIGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSLSLSFYSFMLELFD 81
          NYNSN ++S   ++F+L  F 
Sbjct: 61 NYNSNNTISSISFAFLLFFFS 81

[Close]

BLAST of CsGy2G024020 vs. NCBI nr
Match: CAG7889275.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 144 bits (362), Expect = 4.29e-42
Identity = 66/81 (81.48%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDA+GLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDAIGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSLSLSFYSFMLELFD 81
          NYNSN ++S   ++F+L  F 
Sbjct: 61 NYNSNNTISSISFAFLLFFFS 81

[Close]

BLAST of CsGy2G024020 vs. NCBI nr
Match: KAF9685616.1 (hypothetical protein SADUNF_Sadunf03G0073100 [Salix dunnii])

HSP 1 Score: 143 bits (361), Expect = 5.07e-42
Identity = 71/87 (81.61%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSLS-LSFYSFMLELFDCRRTI 86
          NYNSN SLS  S  S++L L+   R +
Sbjct: 61 NYNSNFSLSPASTLSYVLHLWRKVRAV 87

[Close]

BLAST of CsGy2G024020 vs. ExPASy TrEMBL
Match: A0A5A7UPU3 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00170 PE=3 SV=1)

HSP 1 Score: 166 bits (421), Expect = 8.94e-52
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSLSLSFY--SFMLELFDC 82
          NYNSNPSLSL F   SFMLELFDC
Sbjct: 61 NYNSNPSLSLFFLFCSFMLELFDC 84

[Close]

BLAST of CsGy2G024020 vs. ExPASy TrEMBL
Match: A0A077RWJ0 (Uncharacterized protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF057600100CFD_c1 PE=3 SV=1)

HSP 1 Score: 145 bits (366), Expect = 1.14e-42
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSLSLSFYSFMLEL 79
          NYNS   L  +F S++L L
Sbjct: 61 NYNSKLMLLYNFVSYILLL 79

[Close]

BLAST of CsGy2G024020 vs. ExPASy TrEMBL
Match: A0A5J5BP64 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_020993 PE=3 SV=1)

HSP 1 Score: 143 bits (361), Expect = 3.24e-42
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDSYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSLSLS 71
          NYNS  SLSLS
Sbjct: 61 NYNSTLSLSLS 71

[Close]

BLAST of CsGy2G024020 vs. ExPASy TrEMBL
Match: A0A540MUX8 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011823 PE=3 SV=1)

HSP 1 Score: 142 bits (359), Expect = 3.44e-42
Identity = 69/77 (89.61%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSN------PSLSLS 71
          NYNSN      PSLSLS
Sbjct: 61 NYNSNLSRTLSPSLSLS 77

[Close]

BLAST of CsGy2G024020 vs. ExPASy TrEMBL
Match: A0A540N402 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008671 PE=3 SV=1)

HSP 1 Score: 142 bits (357), Expect = 5.47e-42
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSLSL 70
          NYNSN SL L
Sbjct: 61 NYNSNLSLPL 70

[Close]

BLAST of CsGy2G024020 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 133.7 bits (335), Expect = 8.6e-32
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNS 65
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of CsGy2G024020 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-31
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNS 65
          NYN+
Sbjct: 61 NYNT 64

The following BLAST results are available for this feature:

BLAST of CsGy2G024020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYA6	1.2e-30	92.19	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3...	[more]
Q8LFJ6	6.0e-30	92.19	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=...	[more]
Q39290	6.0e-30	92.19	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=...	[more]
Q55AB6	4.8e-27	88.71	DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium disc...	[more]
Q32P78	8.2e-27	83.87	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913...	[more]

BLAST of CsGy2G024020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057130.1	1.85e-51	95.24	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. ma...	[more]
CDM84745.1	2.35e-42	86.08	unnamed protein product [Triticum aestivum]	[more]
CAF2153035.1	2.80e-42	81.48	unnamed protein product, partial [Brassica napus]	[more]
CAG7889275.1	4.29e-42	81.48	unnamed protein product [Brassica rapa]	[more]
KAF9685616.1	5.07e-42	81.61	hypothetical protein SADUNF_Sadunf03G0073100 [Salix dunnii]	[more]

BLAST of CsGy2G024020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UPU3	8.94e-52	95.24	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. ...	[more]
A0A077RWJ0	1.14e-42	86.08	Uncharacterized protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF057600100CFD_c1...	[more]
A0A5J5BP64	3.24e-42	94.37	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_020993 PE=3 SV=1	[more]
A0A540MUX8	3.44e-42	89.61	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011823 PE=3 SV=1	[more]
A0A540N402	5.47e-42	94.29	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008671 PE=3 SV=1	[more]

BLAST of CsGy2G024020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61700.1	8.6e-32	92.19	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	4.3e-31	92.19	RNA polymerases N / 8 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 1..59 e-value: 1.4E-31 score: 108.5
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 1..64
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	HAMAP	MF_00250	RNApol_arch_N	coord: 1..63 score: 19.33688
None	No IPR available	GENE3D	1.10.10.60		coord: 1..65 e-value: 4.5E-39 score: 134.4
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 1..64
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 2..11
IPR023580	RNA polymerase subunit RPB10	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G024020.2	CsGy2G024020.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0042797	tRNA transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding