CsGy1G021890 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G021890
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	signaling peptide TAXIMIN 1-like
Location	Gy14Chr1: 20639901 .. 20640256 (-)
RNA-Seq Expression	CsGy1G021890
Synteny	CsGy1G021890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTGCTGCTGCTCTGAGAAATGTAACTGCAGGCCTCTCGGCTTCCTTCTCAGCTTACCGTTTGCCTTTCTCTCCATTTTTGTTGGCTTCGTTGGTGTTGTTATTTGGATCGTTGGGTTAGTATTGTACTTGTGTACGTGGAATATCTTTCTCATTTTATAACTATTTTGTTTCGGGTCTTTTGTTGTATAAGTTTTGCCAATTCATATTTTTCTATTTGGCTTTGCAGATCGGTTCTAAGTTGCATATGTCCTTGCTGCTTTTGTGTGACTGTGGTAATCGAGTTTGCATTGGCTTTGATCAATGCTCCAATTTTAGTCATGAAATGGTTCACCTCCAAAATCCACTGTTAG

mRNA sequence

ATGTGTTGCTGCTGCTCTGAGAAATGTAACTGCAGGCCTCTCGGCTTCCTTCTCAGCTTACCGTTTGCCTTTCTCTCCATTTTTGTTGGCTTCGTTGGTGTTGTTATTTGGATCGTTGGATCGGTTCTAAGTTGCATATGTCCTTGCTGCTTTTGTGTGACTGTGGTAATCGAGTTTGCATTGGCTTTGATCAATGCTCCAATTTTAGTCATGAAATGGTTCACCTCCAAAATCCACTGTTAG

Coding sequence (CDS)

ATGTGTTGCTGCTGCTCTGAGAAATGTAACTGCAGGCCTCTCGGCTTCCTTCTCAGCTTACCGTTTGCCTTTCTCTCCATTTTTGTTGGCTTCGTTGGTGTTGTTATTTGGATCGTTGGATCGGTTCTAAGTTGCATATGTCCTTGCTGCTTTTGTGTGACTGTGGTAATCGAGTTTGCATTGGCTTTGATCAATGCTCCAATTTTAGTCATGAAATGGTTCACCTCCAAAATCCACTGTTAG

Protein sequence

MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFALALINAPILVMKWFTSKIHC*

Homology

[Close]

BLAST of CsGy1G021890 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-22
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 10 NCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFALALINAPIL 69
          +CRPLGFLL LPFAFLS+ +  +GV+IWIVG +LSCICPCC CVTV++E A+ LI API 
Sbjct: 5  DCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIH 64

Query: 70 VMKWFTSKIHC 81
          VM+WF SKI C
Sbjct: 65 VMEWFMSKIPC 75

[Close]

BLAST of CsGy1G021890 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-18
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 10 NCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFALALINAPIL 69
          +CRPLGFL+ LPFA +++ +  VG VIWI+G+VLSC+CPCCFC   +  FA+ LI  PI 
Sbjct: 3  DCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIK 62

Query: 70 VMKWFTSKIHC 81
          V++WFT  I C
Sbjct: 63 VLRWFTHSIPC 73

[Close]

BLAST of CsGy1G021890 vs. NCBI nr
Match: XP_004149050.1 (signaling peptide TAXIMIN 1 [Cucumis sativus])

HSP 1 Score: 162 bits (410), Expect = 3.18e-50
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60
          MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA
Sbjct: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60

Query: 61 LALINAPILVMKWFTSKIHC 80
          LALINAPILVMKWFTSKI C
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of CsGy1G021890 vs. NCBI nr
Match: XP_008443051.1 (PREDICTED: uncharacterized protein LOC103486760 [Cucumis melo])

HSP 1 Score: 160 bits (406), Expect = 1.30e-49
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60
          MCCCCSEKCNCRPLGFLL LPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA
Sbjct: 1  MCCCCSEKCNCRPLGFLLGLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60

Query: 61 LALINAPILVMKWFTSKIHC 80
          LALINAPILVMKWFTSKI C
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of CsGy1G021890 vs. NCBI nr
Match: XP_022139803.1 (uncharacterized protein LOC111010630 [Momordica charantia])

HSP 1 Score: 148 bits (374), Expect = 9.92e-45
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60
          MCCCC EKCNCRPLGFLL LPFAFL++F+GF+G +IWI GSVL+CICPCC CVTVV+EFA
Sbjct: 1  MCCCCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFA 60

Query: 61 LALINAPILVMKWFTSKIHC 80
          LALINAPILVMKWFTSKI C
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of CsGy1G021890 vs. NCBI nr
Match: XP_022955033.1 (uncharacterized protein LOC111457111 [Cucurbita moschata] >XP_023541227.1 uncharacterized protein LOC111801456 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146 bits (368), Expect = 8.17e-44
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60
          MCCCC E CNCRPLGFLL LPFAFL++FVGFVG++IWI GSVLSCICPCC CVTV +EFA
Sbjct: 1  MCCCCCEDCNCRPLGFLLGLPFAFLALFVGFVGIIIWIFGSVLSCICPCCLCVTVAVEFA 60

Query: 61 LALINAPILVMKWFTSKIHC 80
          LALIN PILVMKWFTSKI C
Sbjct: 61 LALINVPILVMKWFTSKIPC 80

[Close]

BLAST of CsGy1G021890 vs. NCBI nr
Match: KAF3965153.1 (hypothetical protein CMV_010635 [Castanea mollissima])

HSP 1 Score: 134 bits (337), Expect = 4.39e-39
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60
          MCCCC E C CRPLGFLL LPFAFLS+ V  VG+++WIVG  L+CICPCC CVT+++EFA
Sbjct: 1  MCCCCGEDCECRPLGFLLGLPFAFLSLLVSLVGIIVWIVGLALTCICPCCLCVTIIVEFA 60

Query: 61 LALINAPILVMKWFTSKIHC 80
          LA+I APILVMKWFTSKI C
Sbjct: 61 LAMIKAPILVMKWFTSKIPC 80

[Close]

BLAST of CsGy1G021890 vs. ExPASy TrEMBL
Match: A0A0A0LV60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G478070 PE=4 SV=1)

HSP 1 Score: 162 bits (410), Expect = 1.54e-50
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60
          MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA
Sbjct: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60

Query: 61 LALINAPILVMKWFTSKIHC 80
          LALINAPILVMKWFTSKI C
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of CsGy1G021890 vs. ExPASy TrEMBL
Match: A0A1S3B6N4 (uncharacterized protein LOC103486760 OS=Cucumis melo OX=3656 GN=LOC103486760 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 6.28e-50
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60
          MCCCCSEKCNCRPLGFLL LPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA
Sbjct: 1  MCCCCSEKCNCRPLGFLLGLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60

Query: 61 LALINAPILVMKWFTSKIHC 80
          LALINAPILVMKWFTSKI C
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of CsGy1G021890 vs. ExPASy TrEMBL
Match: A0A6J1CGK2 (uncharacterized protein LOC111010630 OS=Momordica charantia OX=3673 GN=LOC111010630 PE=4 SV=1)

HSP 1 Score: 148 bits (374), Expect = 4.80e-45
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60
          MCCCC EKCNCRPLGFLL LPFAFL++F+GF+G +IWI GSVL+CICPCC CVTVV+EFA
Sbjct: 1  MCCCCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFA 60

Query: 61 LALINAPILVMKWFTSKIHC 80
          LALINAPILVMKWFTSKI C
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of CsGy1G021890 vs. ExPASy TrEMBL
Match: A0A6J1GSU1 (uncharacterized protein LOC111457111 OS=Cucurbita moschata OX=3662 GN=LOC111457111 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 3.96e-44
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60
          MCCCC E CNCRPLGFLL LPFAFL++FVGFVG++IWI GSVLSCICPCC CVTV +EFA
Sbjct: 1  MCCCCCEDCNCRPLGFLLGLPFAFLALFVGFVGIIIWIFGSVLSCICPCCLCVTVAVEFA 60

Query: 61 LALINAPILVMKWFTSKIHC 80
          LALIN PILVMKWFTSKI C
Sbjct: 61 LALINVPILVMKWFTSKIPC 80

[Close]

BLAST of CsGy1G021890 vs. ExPASy TrEMBL
Match: A0A2I0JZW5 (signaling peptide TAXIMIN 1-like OS=Punica granatum OX=22663 GN=LOC116205903 PE=4 SV=1)

HSP 1 Score: 132 bits (333), Expect = 8.92e-39
Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 2  CCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFAL 61
          CCCC + C CRPLGFLL LPFAFLSI +  +GVV+WIVG VLSCICPCCFCVT+++EFAL
Sbjct: 3  CCCCDDDCECRPLGFLLGLPFAFLSILLSIIGVVVWIVGLVLSCICPCCFCVTILVEFAL 62

Query: 62 ALINAPILVMKWFTSKIHC 80
           LI API VMKWFTSKI C
Sbjct: 63 GLIRAPIAVMKWFTSKIPC 81

[Close]

BLAST of CsGy1G021890 vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-23
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 10 NCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFALALINAPIL 69
          +CRPLGFLL LPFAFLS+ +  +GV+IWIVG +LSCICPCC CVTV++E A+ LI API 
Sbjct: 5  DCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIH 64

Query: 70 VMKWFTSKIHC 81
          VM+WF SKI C
Sbjct: 65 VMEWFMSKIPC 75

[Close]

BLAST of CsGy1G021890 vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-19
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 10 NCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFALALINAPIL 69
          +CRPLGFL+ LPFA +++ +  VG VIWI+G+VLSC+CPCCFC   +  FA+ LI  PI 
Sbjct: 3  DCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIK 62

Query: 70 VMKWFTSKIHC 81
          V++WFT  I C
Sbjct: 63 VLRWFTHSIPC 73

The following BLAST results are available for this feature:

BLAST of CsGy1G021890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82275	1.7e-22	69.01	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]
Q1G309	4.2e-18	56.34	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]

BLAST of CsGy1G021890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149050.1	3.18e-50	98.75	signaling peptide TAXIMIN 1 [Cucumis sativus]	[more]
XP_008443051.1	1.30e-49	97.50	PREDICTED: uncharacterized protein LOC103486760 [Cucumis melo]	[more]
XP_022139803.1	9.92e-45	83.75	uncharacterized protein LOC111010630 [Momordica charantia]	[more]
XP_022955033.1	8.17e-44	83.75	uncharacterized protein LOC111457111 [Cucurbita moschata] >XP_023541227.1 unchar...	[more]
KAF3965153.1	4.39e-39	73.75	hypothetical protein CMV_010635 [Castanea mollissima]	[more]

BLAST of CsGy1G021890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV60	1.54e-50	98.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G478070 PE=4 SV=1	[more]
A0A1S3B6N4	6.28e-50	97.50	uncharacterized protein LOC103486760 OS=Cucumis melo OX=3656 GN=LOC103486760 PE=...	[more]
A0A6J1CGK2	4.80e-45	83.75	uncharacterized protein LOC111010630 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1GSU1	3.96e-44	83.75	uncharacterized protein LOC111457111 OS=Cucurbita moschata OX=3662 GN=LOC1114571...	[more]
A0A2I0JZW5	8.92e-39	75.95	signaling peptide TAXIMIN 1-like OS=Punica granatum OX=22663 GN=LOC116205903 PE=...	[more]

BLAST of CsGy1G021890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31090.1	1.2e-23	69.01	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20562.1	3.0e-19	56.34	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834:SF9	PROTEIN, PUTATIVE-RELATED	coord: 1..80
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G021890.2	CsGy1G021890.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane