CsGy1G008100 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G008100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	Gy14Chr1: 5122090 .. 5123423 (+)
RNA-Seq Expression	CsGy1G008100
Synteny	CsGy1G008100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTTTTTATTGGGCAAATAAAAAATATATATATATATAATCCCGAAATTCTCATCTTCTTCCCCCCACAAACTCTCCGATTCAGCCGCGTCTCAGCCTCTTCGATCCGCTTCCTCCGCCGATATTCATCAATGGCTCCGTCCTCCAACCTTAGTCGATGGCTGAGGCCTGAGGTAATTAACAATCATTCAGATCTGTCCTCTAATTTTTCTCCGGTTCTGTTTTGTTATTGATTGATCTTCTTTTCCATGCCGTCTAATCATTTCGATCAATTCCATTTTTAGGTTTACCCTCTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGTGGATTTCAGTTAATCCGTAACATCTGCATCAATCCTGAAGTCAGGTCTCTCCTTCTTTCTCTAAACTTTAACTTTTCATTTGTGTTTTTAAGTTCGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGTTTAATCTGCATATTCTCGTGGTATAAATTTATTATGATTGCAGTTTTGAGGATGAGTAATACTAAGTTTTGAATATAAACCTACCTCTGACCCTTTGCTATCCCTGTGATTAGTTCCAATAGGATGAGTATAGATAATTTGTTCGATTATAATGCATGCTTACTATAAACCAGTGCTTAAATTAATGGATTTAACCAGTCGAATTGTCGATTGCTGTGGCATAGTAACTGCAAAGAATCTTAGGGTTTTTTTTCTTGTAGTTTTTTGCTAACATAGACAGTAGACCTGGCCAAGAAGATATGTCAAGGTGCAAAATTGTTATGAAACTAGTTTCAAATCCCAAACAAACGAAAACGTAAATTACCAAACTCTGCTTGTTGAATTTGACTAGAAATCTGAAAAACCTTATTTTGGTAACCATTTAGTTTTTTGTTTTTAGCTTTTGAAAATTAAACCTACAAACATCTCTGCACCTCTAATTTTCTTGTTTTAAAAAATCAAGCCTTGTTTTTTAAATTTAGCGAAGTATTCAACACAAATTATGAAATTTTTTGAAATATACTTAATTTTAAAAAATAGTGAGGGGTTGTATCACTGTGTGCCCTTGTCAAAAGGGATCGATTGGCTTTGATTGAAATGGGGTATGTTTTGTTTCCTTCATTAAGAGTTCTGTAAACTGATTAGTACATCGTTTTTCTAATCATTCGAGAATCAGAGTTACCAAGGAGAATAGGGCTGCTGGAGTGTTGGATAACTTTGCTGAGGGAGAGAAGTATTCTGAACATTTCCTGAGGAAATTCGTACGCAACAAGTCCCCAGAAATTATGCCATCAATCAACAACTTTTTCACTGACCCAAATCGAAACTAA

mRNA sequence

ATGCATTTTTTTATTGGGCAAATAAAAAATATATATATATATAATCCCGAAATTCTCATCTTCTTCCCCCCACAAACTCTCCGATTCAGCCGCGTCTCAGCCTCTTCGATCCGCTTCCTCCGCCGATATTCATCAATGGCTCCGTCCTCCAACCTTAGTCGATGGCTGAGGCCTGAGGTTTACCCTCTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGTGGATTTCAGTTAATCCGTAACATCTGCATCAATCCTGAAGTCAGAGTTACCAAGGAGAATAGGGCTGCTGGAGTGTTGGATAACTTTGCTGAGGGAGAGAAGTATTCTGAACATTTCCTGAGGAAATTCGTACGCAACAAGTCCCCAGAAATTATGCCATCAATCAACAACTTTTTCACTGACCCAAATCGAAACTAA

Coding sequence (CDS)

ATGCATTTTTTTATTGGGCAAATAAAAAATATATATATATATAATCCCGAAATTCTCATCTTCTTCCCCCCACAAACTCTCCGATTCAGCCGCGTCTCAGCCTCTTCGATCCGCTTCCTCCGCCGATATTCATCAATGGCTCCGTCCTCCAACCTTAGTCGATGGCTGAGGCCTGAGGTTTACCCTCTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGTGGATTTCAGTTAATCCGTAACATCTGCATCAATCCTGAAGTCAGAGTTACCAAGGAGAATAGGGCTGCTGGAGTGTTGGATAACTTTGCTGAGGGAGAGAAGTATTCTGAACATTTCCTGAGGAAATTCGTACGCAACAAGTCCCCAGAAATTATGCCATCAATCAACAACTTTTTCACTGACCCAAATCGAAACTAA

Protein sequence

MHFFIGQIKNIYIYNPEILIFFPPQTLRFSRVSASSIRFLRRYSSMAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAEGEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN*

Homology

[Close]

BLAST of CsGy1G008100 vs. NCBI nr
Match: XP_004152455.2 (uncharacterized protein LOC101218501 isoform X2 [Cucumis sativus])

HSP 1 Score: 284 bits (726), Expect = 1.50e-96
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MHFFIGQIKNIYIYNPEILIFFPPQTLRFSRVSASSIRFLRRYSSMAPSSNLSRWLRPEV 60
           MHFFIGQIKNIYIYNPEILIFFPPQTLRFSRVSASSIRFLRRYSSMAPSSNLSRWLRPEV
Sbjct: 1   MHFFIGQIKNIYIYNPEILIFFPPQTLRFSRVSASSIRFLRRYSSMAPSSNLSRWLRPEV 60

Query: 61  YPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAEGEKYSEHFLRKFVRN 120
           YPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAEGEKYSEHFLRKFVRN
Sbjct: 61  YPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAEGEKYSEHFLRKFVRN 120

Query: 121 KSPEIMPSINNFFTDPNRN 139
           KSPEIMPSINNFFTDPNRN
Sbjct: 121 KSPEIMPSINNFFTDPNRN 139

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BLAST of CsGy1G008100 vs. NCBI nr
Match: XP_031736912.1 (uncharacterized protein LOC101218501 isoform X1 [Cucumis sativus])

HSP 1 Score: 279 bits (713), Expect = 1.54e-94
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MHFFIGQIKNIYIYNPEILIFFPPQTLRFSRVSASSIRFLRRYSSMAPSSNLSRWLRPEV 60
           MHFFIGQIKNIYIYNPEILIFFPPQTLRFSRVSASSIRFLRRYSSMAPSSNLSRWLRPEV
Sbjct: 1   MHFFIGQIKNIYIYNPEILIFFPPQTLRFSRVSASSIRFLRRYSSMAPSSNLSRWLRPEV 60

Query: 61  YPLFAAVGVAVGICGFQLIRNICINPEVR--VTKENRAAGVLDNFAEGEKYSEHFLRKFV 120
           YPLFAAVGVAVGICGFQLIRNICINPEVR  VTKENRAAGVLDNFAEGEKYSEHFLRKFV
Sbjct: 61  YPLFAAVGVAVGICGFQLIRNICINPEVRIRVTKENRAAGVLDNFAEGEKYSEHFLRKFV 120

Query: 121 RNKSPEIMPSINNFFTDPNRN 139
           RNKSPEIMPSINNFFTDPNRN
Sbjct: 121 RNKSPEIMPSINNFFTDPNRN 141

[Close]

BLAST of CsGy1G008100 vs. NCBI nr
Match: KGN64280.1 (hypothetical protein Csa_013651 [Cucumis sativus])

HSP 1 Score: 197 bits (500), Expect = 1.00e-62
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 46  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 105
           MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE
Sbjct: 1   MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 60

Query: 106 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 139
           GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN
Sbjct: 61  GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 94

[Close]

BLAST of CsGy1G008100 vs. NCBI nr
Match: XP_038893556.1 (uncharacterized protein LOC120082448 [Benincasa hispida])

HSP 1 Score: 192 bits (487), Expect = 9.63e-61
Identity = 90/94 (95.74%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 46  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 105
           MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRV+KENRAAGVLDNFAE
Sbjct: 1   MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 106 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 139
           GEKY+EHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 61  GEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of CsGy1G008100 vs. NCBI nr
Match: XP_008437938.1 (PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo] >KAA0055200.1 uncharacterized protein E6C27_scaffold80G00410 [Cucumis melo var. makuwa] >TYJ99130.1 uncharacterized protein E5676_scaffold248G003360 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (485), Expect = 1.94e-60
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 46  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 105
           MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRV+KENRAAGVLDNFAE
Sbjct: 1   MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 106 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 139
           GEKYSEHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 61  GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of CsGy1G008100 vs. ExPASy TrEMBL
Match: A0A0A0LQT3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045780 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 4.86e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 46  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 105
           MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE
Sbjct: 1   MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 60

Query: 106 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 139
           GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN
Sbjct: 61  GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 94

[Close]

BLAST of CsGy1G008100 vs. ExPASy TrEMBL
Match: A0A5A7UIX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003360 PE=4 SV=1)

HSP 1 Score: 191 bits (485), Expect = 9.40e-61
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 46  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 105
           MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRV+KENRAAGVLDNFAE
Sbjct: 1   MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 106 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 139
           GEKYSEHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 61  GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of CsGy1G008100 vs. ExPASy TrEMBL
Match: A0A1S3AVT0 (uncharacterized protein LOC103483212 OS=Cucumis melo OX=3656 GN=LOC103483212 PE=4 SV=1)

HSP 1 Score: 191 bits (485), Expect = 9.40e-61
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 46  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 105
           MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRV+KENRAAGVLDNFAE
Sbjct: 1   MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 106 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 139
           GEKYSEHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 61  GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of CsGy1G008100 vs. ExPASy TrEMBL
Match: A0A6J1E888 (uncharacterized protein LOC111431708 OS=Cucurbita moschata OX=3662 GN=LOC111431708 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 2.06e-57
Identity = 87/94 (92.55%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 46  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 105
           MAPS+ ++RWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRVTKENRAAGVLDNFAE
Sbjct: 1   MAPST-VNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAE 60

Query: 106 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 139
           GEKY+EHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 61  GEKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of CsGy1G008100 vs. ExPASy TrEMBL
Match: A0A6J1C941 (uncharacterized protein LOC111009092 OS=Momordica charantia OX=3673 GN=LOC111009092 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 8.37e-57
Identity = 86/94 (91.49%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 46  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 105
           MAPS+ +SRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRV+KENR+AGVLDNFAE
Sbjct: 1   MAPST-VSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRSAGVLDNFAE 60

Query: 106 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 139
           GEKY+EHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 61  GEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of CsGy1G008100 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-36
Identity = 70/84 (83.33%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 53  SRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAEGEKYSEH 112
           SRWLRPEVYPLFAA GVAVGIC F LIRNI  NPEVR TKENRAAG+LDN AEGEKY E+
Sbjct: 3   SRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKEN 62

Query: 113 FLRKFVRNKSPEIMPSINNFFTDP 137
           FLRKFVRNK PEIMP +N FFTDP
Sbjct: 63  FLRKFVRNKKPEIMPGLNKFFTDP 86

[Close]

BLAST of CsGy1G008100 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 101.3 bits (251), Expect = 6.5e-22
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 52  LSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAEGEKYSE 111
           + RW+RPEVYPL  A+G    +  FQL RN  +NP+ R+ KE+R  G+L+N  EGEKY++
Sbjct: 1   MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 112 HFLRKFVRNKSPEIMPSINNFFT 135
           H  RK++R + P++MPS+N FF+
Sbjct: 61  HNFRKYLRTRQPQVMPSLNRFFS 83

The following BLAST results are available for this feature:

BLAST of CsGy1G008100 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G008100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152455.2	1.50e-96	100.00	uncharacterized protein LOC101218501 isoform X2 [Cucumis sativus]	[more]
XP_031736912.1	1.54e-94	98.58	uncharacterized protein LOC101218501 isoform X1 [Cucumis sativus]	[more]
KGN64280.1	1.00e-62	100.00	hypothetical protein Csa_013651 [Cucumis sativus]	[more]
XP_038893556.1	9.63e-61	95.74	uncharacterized protein LOC120082448 [Benincasa hispida]	[more]
XP_008437938.1	1.94e-60	96.81	PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo] >KAA0055200.1 unc...	[more]

BLAST of CsGy1G008100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQT3	4.86e-63	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045780 PE=4 SV=1	[more]
A0A5A7UIX5	9.40e-61	96.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AVT0	9.40e-61	96.81	uncharacterized protein LOC103483212 OS=Cucumis melo OX=3656 GN=LOC103483212 PE=...	[more]
A0A6J1E888	2.06e-57	92.55	uncharacterized protein LOC111431708 OS=Cucurbita moschata OX=3662 GN=LOC1114317...	[more]
A0A6J1C941	8.37e-57	91.49	uncharacterized protein LOC111009092 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]

BLAST of CsGy1G008100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48140.1	2.1e-36	83.33	B12D protein	[more]
AT3G29970.1	6.5e-22	49.40	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 57..124 e-value: 3.4E-25 score: 87.6
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 51..138
None	No IPR available	PANTHER	PTHR33417:SF13	OS07G0274700 PROTEIN	coord: 51..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G008100.2	CsGy1G008100.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane