CsGy1G005380 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G005380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Disulfide bond formation protein B 2, putative
Location	Gy14Chr1: 3570652 .. 3571916 (-)
RNA-Seq Expression	CsGy1G005380
Synteny	CsGy1G005380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACCTCTGAGACTTCATATATAAATACCTCCATTGATTTTCTTTGGTTTGAAGCAGAGCAGCAGTTTCATCAATGGCAGCAGCCTCTCATTTCCTTCGTTTGCTTGTCATATTCTTGGGACTTTATAACCTTCTTTGTTCCAATGCTGTCCCAACTTCAAGTAAGTCTCTAAAATCAATCTCTTTTCTCTTCTTTTTCTTTTTTTCTTCTTGTAAAATGAACTAAACTCTTCTGATCTGATTCTGTAGGAAGTGTCAGCCTCTTGCATGGATCTCTTCCATTTCCTCATGTTTCAAGCAACACCCTCATGGTATGTTACATTACCCTTCAACCTCAATGTCATTATCCCTCCAAGTTTTTAGCTTTCGATCATAGGATCAGAGCAGTGATTATGTGTTGAAACTCTATTGTTCTTTCTTTTTCCATTCCTAGTCTTTAGACCAATAACCAAAGATGAACATAAACCATAGAATATTAAAGAATCAACATACAAATTTACATAGTTCATTGATAGTGTGTTAGCTATGTTTACTGATATCAATAAGGATGTTAAGGAGTTATATGAGACACCTCCACTAAATCCTATGATCAAAATTGTAAATAATGCCAATAACATACATTACACATACAAATACAACCAAGGGTTTTGCAAAACTAGGGTCTCTAATCTCTGGTGTTTGTTCTATACCTTAGTTGTTTGAAGCGCTAGATAAAATATTCAAAGGTATTTCAACAACTAGAAAATTAGAGTGTTATGAAAATAACTTTACTGTAATGTATCCGTTTATGTTACTGAGATTTAAACAGAGAAGGCTTTCTGTTTTATGCAGGTGACTAAAACGGAGGAAGAAGAGAGCCATGGAAGAATGGTTGTGGCACTAAATGACTATCCAGGGTCAGGAGCCAACAATCGTCACACACCAAGGCCACAATTTAGGGGCTGTGCTGATTGTTGATTAGATTTTACATTACATATTTTAGGGATTGGTTGGGCTCTATATTTATATGATATTATTGGTTTGAATTATCTTTATATCTATCTATGATCATATTATATGTATTACATGGGAATATGGAAGGAGGGTTTGAGCTTCTTCATCACTCAATTAAGCTGTTGAAAAGCTGAGAAAAGAGATGGGTAGAAAAATTCATAAGATTAGGTGAAAAATGAGTCAAAAAATTGTGTACTTTGTAAAACAAAGCAAAGAGACCTTCTTTGGCTTATTTGTTTAGTAATATATAATTTTCAGGGCTGAAATCAAAG

mRNA sequence

CAACCTCTGAGACTTCATATATAAATACCTCCATTGATTTTCTTTGGTTTGAAGCAGAGCAGCAGTTTCATCAATGGCAGCAGCCTCTCATTTCCTTCGTTTGCTTGTCATATTCTTGGGACTTTATAACCTTCTTTGTTCCAATGCTGTCCCAACTTCAAGAAGTGTCAGCCTCTTGCATGGATCTCTTCCATTTCCTCATGTTTCAAGCAACACCCTCATGGTGACTAAAACGGAGGAAGAAGAGAGCCATGGAAGAATGGTTGTGGCACTAAATGACTATCCAGGGTCAGGAGCCAACAATCGTCACACACCAAGGCCACAATTTAGGGGCTGTGCTGATTGTTGATTAGATTTTACATTACATATTTTAGGGATTGGTTGGGCTCTATATTTATATGATATTATTGGTTTGAATTATCTTTATATCTATCTATGATCATATTATATGTATTACATGGGAATATGGAAGGAGGGTTTGAGCTTCTTCATCACTCAATTAAGCTGTTGAAAAGCTGAGAAAAGAGATGGGTAGAAAAATTCATAAGATTAGGTGAAAAATGAGTCAAAAAATTGTGTACTTTGTAAAACAAAGCAAAGAGACCTTCTTTGGCTTATTTGTTTAGTAATATATAATTTTCAGGGCTGAAATCAAAG

Coding sequence (CDS)

ATGGCAGCAGCCTCTCATTTCCTTCGTTTGCTTGTCATATTCTTGGGACTTTATAACCTTCTTTGTTCCAATGCTGTCCCAACTTCAAGAAGTGTCAGCCTCTTGCATGGATCTCTTCCATTTCCTCATGTTTCAAGCAACACCCTCATGGTGACTAAAACGGAGGAAGAAGAGAGCCATGGAAGAATGGTTGTGGCACTAAATGACTATCCAGGGTCAGGAGCCAACAATCGTCACACACCAAGGCCACAATTTAGGGGCTGTGCTGATTGTTGA

Protein sequence

MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESHGRMVVALNDYPGSGANNRHTPRPQFRGCADC*

Homology

[Close]

BLAST of CsGy1G005380 vs. NCBI nr
Match: XP_011649815.1 (uncharacterized protein LOC101218201 [Cucumis sativus] >KGN64005.1 hypothetical protein Csa_014107 [Cucumis sativus])

HSP 1 Score: 188 bits (478), Expect = 2.94e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60
          MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CsGy1G005380 vs. NCBI nr
Match: XP_008442734.1 (PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (456), Expect = 6.70e-57
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60
          MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPF HVSS+T MVTKTEEEESH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CsGy1G005380 vs. NCBI nr
Match: KAA0036087.1 (putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (453), Expect = 1.92e-56
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60
          MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPF HVS++T MVTKTEEEESH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CsGy1G005380 vs. NCBI nr
Match: XP_038895124.1 (uncharacterized protein LOC120083435 [Benincasa hispida])

HSP 1 Score: 157 bits (397), Expect = 6.73e-48
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60
          MAAA+HFLRLLVIFLGL +LLCSNAVPTSRSVSLL GS PF  VSSNT MVT TEEE S 
Sbjct: 1  MAAATHFLRLLVIFLGLCSLLCSNAVPTSRSVSLLRGSHPFLLVSSNTHMVTATEEEVSR 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CsGy1G005380 vs. NCBI nr
Match: KAG6607449.1 (hypothetical protein SDJN03_00791, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037107.1 hypothetical protein SDJN02_00728 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147 bits (371), Expect = 6.03e-44
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 3  AASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESHGR 62
          A+++FL LLV+FLG+ NLLCSNAVPTSRSVSLLHGS  F HVSS+T MV+ T++EESHGR
Sbjct: 2  ASTNFLCLLVVFLGVSNLLCSNAVPTSRSVSLLHGSDQFLHVSSDTHMVSATKKEESHGR 61

Query: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 91
          M V LNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 62 MAVELNDYPGSGANNRHTPRPQFRGCADC 90

[Close]

BLAST of CsGy1G005380 vs. ExPASy TrEMBL
Match: A0A0A0LQ59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033240 PE=4 SV=1)

HSP 1 Score: 188 bits (478), Expect = 1.42e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60
          MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CsGy1G005380 vs. ExPASy TrEMBL
Match: A0A5D3BKK4 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00920 PE=4 SV=1)

HSP 1 Score: 180 bits (456), Expect = 3.24e-57
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60
          MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPF HVSS+T MVTKTEEEESH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CsGy1G005380 vs. ExPASy TrEMBL
Match: A0A1S3B758 (uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=4 SV=1)

HSP 1 Score: 180 bits (456), Expect = 3.24e-57
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60
          MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPF HVSS+T MVTKTEEEESH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CsGy1G005380 vs. ExPASy TrEMBL
Match: A0A5A7T3C3 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00820 PE=4 SV=1)

HSP 1 Score: 179 bits (453), Expect = 9.30e-57
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60
          MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPF HVS++T MVTKTEEEESH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CsGy1G005380 vs. ExPASy TrEMBL
Match: A0A6J1GC04 (uncharacterized protein LOC111452592 OS=Cucurbita moschata OX=3662 GN=LOC111452592 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 1.19e-43
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 3  AASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESHGR 62
          A ++FL LLV+FLG+ NLLCSNAVPTSRSVSLLHGS  F HVSS+T MV+ T++EE+HGR
Sbjct: 2  ATTNFLCLLVVFLGVSNLLCSNAVPTSRSVSLLHGSDQFLHVSSDTHMVSATKKEENHGR 61

Query: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 91
          M V LNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 62 MAVELNDYPGSGANNRHTPRPQFRGCADC 90

[Close]

BLAST of CsGy1G005380 vs. TAIR 10
Match: AT3G47510.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 30/46 (65.22%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 47 NTLMVTKTEEEESHGRMVVALNDYPGSGANNRHTPRPQFRGC-ADC 92
          +TLM  K E EE   RMV+ LNDYPGSGANNRH PR   RGC  DC
Sbjct: 45 DTLMDVKKEVEE---RMVMELNDYPGSGANNRHLPRQ--RGCVVDC 85

[Close]

BLAST of CsGy1G005380 vs. TAIR 10
Match: AT1G74458.1 (unknown protein; LOCATED IN: endomembrane system; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 5.3e-04
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 0


Query: 67 LNDYPGSGANNRHTPRPQFRGCADC 92
          +NDYPGSGANNRHTP      C+DC
Sbjct: 75 INDYPGSGANNRHTPH-----CSDC 94

The following BLAST results are available for this feature:

BLAST of CsGy1G005380 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G005380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649815.1	2.94e-60	100.00	uncharacterized protein LOC101218201 [Cucumis sativus] >KGN64005.1 hypothetical ...	[more]
XP_008442734.1	6.70e-57	96.70	PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putat...	[more]
KAA0036087.1	1.92e-56	95.60	putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa]	[more]
XP_038895124.1	6.73e-48	87.91	uncharacterized protein LOC120083435 [Benincasa hispida]	[more]
KAG6607449.1	6.03e-44	79.78	hypothetical protein SDJN03_00791, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy1G005380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ59	1.42e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033240 PE=4 SV=1	[more]
A0A5D3BKK4	3.24e-57	96.70	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3B758	3.24e-57	96.70	uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=...	[more]
A0A5A7T3C3	9.30e-57	95.60	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1GC04	1.19e-43	78.65	uncharacterized protein LOC111452592 OS=Cucurbita moschata OX=3662 GN=LOC1114525...	[more]

BLAST of CsGy1G005380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47510.1	1.3e-07	65.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G74458.1	5.3e-04	68.00	unknown protein; LOCATED IN: endomembrane system; Has 9 Blast hits to 9 proteins...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..91
None	No IPR available	PANTHER	PTHR33474	TRANSMEMBRANE PROTEIN	coord: 2..86
None	No IPR available	PANTHER	PTHR33474:SF2	TRANSMEMBRANE PROTEIN	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G005380.2	CsGy1G005380.2	mRNA