Cp4.1LG20g08550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CACTTTCCCTGTTTGCTTCTTCGTCTTCGTCTTGCAAAGCCCCGACCCACATGTCTGCTTTCGGAACTTCGATATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGATGACTCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCCAGAGGGACTGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGGTGAATTGATTCCTTCTCTTTTGACTAGTATCATTTCGATGTTGAATTTTGAGTTCCTTTTCTTGACTGGCGTTCTTGAGTTTTGGAAGATCGTGTTCAAAGTGGAGATGAGTCAGTTTTGGTAATTGTTCGACCATGCAAGCAATATTCTGTTCCATGGCTCTGGTTACTGAACTTCTCTATGCAATTTAATGTCCGATGATAGAACAGGGCTTTACCGTCGCTGGAATTTTTTTTCTTCTACTCTAGCCGTTGGACTCTTGGTTTAGAATTTCTACCAGTCAGGAATGATTTTTCGGATGAAAACATGAACCAATTAGAGAAATTATCATTGTTTACTGAAAATGATCTTTTGTTTTTGCTTCGAGGAGTTGGTTGTAGTAGCATTCCCTAGTCGATTGTTCTCTCATCAGTTATGGGAAAGAAGAACTGTATCAAGTAGTAAAGGGTTTAGTAATTACTTCTGGAATGTGATCATCCGAAAAATGAATCACTACCTAAATTCTCTGTCGTATTGATGGGGATTGCAGTTTTAGTTACCTGATTGGGAATTTTGAAGTTCCGTAGGAACAAGTAAACTACAAGAATTCATTTCCTTCCTCTCTAAATTTGTTTAGGGAATTCATTTTTCATTTATTTGGTATAGTATTTAAGTATGTCCATGATTTCGAGTGAGTTCATCTGACAATCCGAGTGATTCCGTCGTGCAGTTACGATATCGAACTTTCTTAGTCCTTTTCTCTGGATGGTGAACAAGCCTCGACGAACTTTGATATAGACTTAGGTGCTTCTTTGGATTTTGGAACTCTAGCTACTTACCATTTATATGAAATCAATTAGCATAACAGAGCTTGGTTGATTAGGATGGAGACTATCATTGGAAAAAGAATAACAAAAACCTCCACTGTTATGTTAGCCTGTTCATAAATGATGAGGTTCAAATTGTAGGATAGTATTTGGAACTGCCCAAGCCCACCGCTAGCAAATACTGTCTCTTTAGCCCGTTACGTATCATTGTCAGCCTCACGATTTAAAACGCGTCTACTAGGTAGAGGTTTCCATACCCTTATAAGAAATGTTTTGTTCCCTTCTCTAACCAATGTGGGATCTCACAATCCACCCCCTTAGGGCCCAACGTCTTGCTGGAACACCGCTCGGTGTTTGCTTTGATACCATTTGTAACAACCCAAGCTCCTGCTAGCAAATATTGTCCGCTTTGGCCCGTTACTTATCACCTTTATAAGGAATGTTTCGTTTCCTTCTCCAACCAATATGGGATCTCACCTCTGTATGCATGAGGGTGTACAGAGGTGAATAGCTCTTGACTCCATACTTGGACTGTTGCTTGGTGCTTGATATATGATGCTTCACTAAGAATCATGTTTGAGATGGATTATACCTTAACTTTGTATTCATATATAGCTCTGTTTAAAAGCACATTGACATTGTCAATAGACAAAACAAATGCAAGCAATTAAGTACGGTCACAAGTACCATTTAGCATTTAATGATTGACTACGAGTTCGAGTGTCGTTTGAATTGAGTGTTCTTTTTTTTTTTTCATGTCATGTTGAATTAGTTGGGAGCATGCTTGGGCCCATTTATTTCTTGAGATTCCCCTTTCTTATTATCCTGCTTTACATATTTATTAAACAAACAAACAGTAGAGAATGTCAAAGGAATCTAATCCATCCTCATGTTTCTTGCAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGGTGAGTCGAAAGCTAACATTCCTTCTTTTGCACCCAATGGGATATTCAGACCTTCTCATACGTTTTATCGCTTCGATTTACAATTGCAGTCTGCTGACGGCCCCGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTAAACTCCTCAGCCGATCAAAAGCTTGAGGTTTGAAGGCAATTTCATCCCTTTTGGACACTGTTTGGGATACCCATTCAGGTCAGAACCGTCCTCCCTCCCTCTAATGGCTTCCTATCTCCAATTCTTTTGGTCTTTTTTTTGGATGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTCAAAACCAGATTTGGT CACTTTCCCTGTTTGCTTCTTCGTCTTCGTCTTGCAAAGCCCCGACCCACATGTCTGCTTTCGGAACTTCGATATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGATGACTCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCCAGAGGGACTGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGTCTGCTGACGGCCCCGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTAAACTCCTCAGCCGATCAAAAGCTTGAGGTTTGAAGGCAATTTCATCCCTTTTGGACACTGTTTGGGATACCCATTCAGGTCAGAACCGTCCTCCCTCCCTCTAATGGCTTCCTATCTCCAATTCTTTTGGTCTTTTTTTTGGATGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTCAAAACCAGATTTGGT ATGTCTGCTTTCGGAACTTCGATATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGATGACTCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCCAGAGGGACTGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGTCTGCTGACGGCCCCGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTAAACTCCTCAGCCGATCAAAAGCTTGA MSAFGTSISDPDWPRRDPTRFNLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSKA Homology
BLAST of Cp4.1LG20g08550 vs. ExPASy Swiss-Prot
Match: Q9LTJ1 (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 9.3e-32 Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. ExPASy Swiss-Prot
Match: Q9SNC0 (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 1.0e-30 Identity = 75/171 (43.86%), Postives = 98/171 (57.31%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. ExPASy Swiss-Prot
Match: Q9UBB5 (Methyl-CpG-binding domain protein 2 OS=Homo sapiens OX=9606 GN=MBD2 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 3.3e-05 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. ExPASy Swiss-Prot
Match: Q9Z2E1 (Methyl-CpG-binding domain protein 2 OS=Mus musculus OX=10090 GN=Mbd2 PE=2 SV=2) HSP 1 Score: 50.4 bits (119), Expect = 3.3e-05 Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match: XP_023519565.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 509 bits (1310), Expect = 7.10e-182 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match: KAG6583427.1 (Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 503 bits (1295), Expect = 1.38e-179 Identity = 249/252 (98.81%), Postives = 250/252 (99.21%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match: KAG7019190.1 (Methyl-CpG-binding domain-containing protein 6 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 500 bits (1287), Expect = 2.28e-178 Identity = 248/252 (98.41%), Postives = 249/252 (98.81%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match: XP_022964800.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita moschata]) HSP 1 Score: 499 bits (1285), Expect = 4.61e-178 Identity = 247/251 (98.41%), Postives = 248/251 (98.80%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match: XP_022970567.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita maxima]) HSP 1 Score: 496 bits (1277), Expect = 7.64e-177 Identity = 246/251 (98.01%), Postives = 247/251 (98.41%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. ExPASy TrEMBL
Match: A0A6J1HLU8 (methyl-CpG-binding domain-containing protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464796 PE=4 SV=1) HSP 1 Score: 499 bits (1285), Expect = 2.23e-178 Identity = 247/251 (98.41%), Postives = 248/251 (98.80%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. ExPASy TrEMBL
Match: A0A6J1HZG9 (methyl-CpG-binding domain-containing protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111469504 PE=4 SV=1) HSP 1 Score: 496 bits (1277), Expect = 3.70e-177 Identity = 246/251 (98.01%), Postives = 247/251 (98.41%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. ExPASy TrEMBL
Match: A0A6J1KC76 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1) HSP 1 Score: 405 bits (1042), Expect = 3.43e-141 Identity = 205/261 (78.54%), Postives = 223/261 (85.44%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. ExPASy TrEMBL
Match: A0A6J1GAC7 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1) HSP 1 Score: 404 bits (1038), Expect = 1.40e-140 Identity = 205/261 (78.54%), Postives = 222/261 (85.06%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. ExPASy TrEMBL
Match: A0A6J1K9Z4 (methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1) HSP 1 Score: 401 bits (1030), Expect = 2.15e-139 Identity = 205/261 (78.54%), Postives = 223/261 (85.44%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. TAIR 10
Match: AT5G59380.1 (methyl-CPG-binding domain 6 ) HSP 1 Score: 138.7 bits (348), Expect = 6.6e-33 Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 0
BLAST of Cp4.1LG20g08550 vs. TAIR 10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5 ) HSP 1 Score: 135.2 bits (339), Expect = 7.3e-32 Identity = 75/171 (43.86%), Postives = 98/171 (57.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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