Cp4.1LG20g07430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g07430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG20: 6135563 .. 6139806 (+)
RNA-Seq Expression	Cp4.1LG20g07430
Synteny	Cp4.1LG20g07430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTTTTTAAGATGAAATCGACGGTAACGTTGATGTTAACAATCGGTGGAGATTGTGGTTAGCTTTCAGGGGAGTCTGATTCTCAGTTTGTGTGGGTTAATTGCTTCATTGTATCTCTGTATTAACGACTTGATGCTCTTACACTGTAAGTGGAGCCTGCTGTCTGCTAGGAATGTTCTGCATTACTCGTACACTGTAAGTGGTACCTCTAAATTTCTTCCGTTCTTGTTTGTTTGTGTAATATTGCTCCGGAAATCGATTGTTTTGCTGTGAACTGTGTTTGTTACCAATTAGATTGGAAGAAGAATTCTGTTGTATATCTAAGTTCTGAAGTTGATAGATGTGTAAGAATGTCCAAATTAGAGTTCATGGCAGTAGTTTGTAGATGTTCTTGATAGGTGGAATCCAGATTATTTCTCAAAGTCTCTTCTAGGTCTTGATTATTGGACTTTTTGATATAGTAACCTTAGCCAGTTGGGTCTCCGAACCCTCATAACTCTCATGGATATTCTAACCCCTAGATAACGAATGCGAAAACTCCCAAATCGAGCTGATTTCATTTCAAATTATTGATACCACTTGTCACAATTACGGGACAGTGATTGTGCGATACTTGTTCTATCCTAGCGAACAAGTTAGTTGTCGGCCTTGTCACGTTTGAGAAAAATGTTATGGAAAACGTGAGCAAAAAAATATGTTGAAAGCAATGTTATAAGCTAAAAGTGATTAAACAACCACAACGGCTTAGATAGCATATAACCCGTGTAGGAAGACACTCTTGGGAATTCGATCTAGCAACCTTATCGAAGAATAAGACCTTGAGATCTAAACTATCCTAGAACCTCAAAACAATGAGGAAACACCTCAAGGGAAAGTTGATCAAATATCTCAGCAAAAGAAACTTCTTTTGAGATTTTAATTACTCCACAAGGAAGATCGATCATGTCAAGCTTGAATGATTCTAAGCATGCAACCTAATCTACCTACAATTGCAAAAAAACTTAGCATTCCCTTAAAAGATAGCAGAAATTCTCTTTTTACTACATTTTTCAAGTCCAATTTACAAAACAACATACATGACTTCATATAACCTCAAAATAAAACCCTTGACTTTTCATGTAACGGCCCAAACCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTTCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTGCTAGGGAAAGGTTTCCACACCCTTATAAAGGGTGTTTCGTTTTCCTCCTCAACCAATGTGGGATCTCACAATCCACCCCCTTTAGGGCCCAGCGTCCTCGCTAGCATTTGTTCCTTTCTTCAATCGATGTGGGACCCCCATCAAATCCACCCTCCTTCGGGCCCAGAGTCCTTACTGGCACACCGCCTCGTGTCTACCCCTTCAAGGAACAGCCTCCTCGCTGGCACATCGTCTGGTGTCTGGCTCTGATACCATTTGTAACAGCCCAAGCCCATCGCTAGCAGATATTGTCCTCTTTAGGCTTTCCCTTTCGGGTTTCCCCTCAAGGTTTTAAAACGCGTATGCTAGGGAGAGGTTTTCACACCCTTATAAAGGGTGTTTTGTTCTCCTTCCCAACCAATGTGGGATCTCACCTTCCTTGAGGCATTTCAAGAGTTCTAACCTTCCTACTTTATGATCATAATTAGCCACTATATAAATAAAAAGATTTAAAATACATTAATGAAACACCATAACTTTATAACTCTAGATCATCATCCACCCAAAATTTGTAACCATACAAGAAAAGATGAATATTTTTTTACATCTTCCTTGAAGTTCATATTGCAGGATTGAGATCTTATTTCATATCACTTTTGAATCCTTTTTAATCTGTCATTGGCAGGCTTTGATATGGATCATGTTTTCTGAGCTTATATAACCAATCTTTCTTCAGTAACTTAATTTACTAAAATTTTGTTCGTGCACATCAATTATCGAAAACCCGGCTTTGAATGCTCAATAGTCATTTAACAATTCATCAATATCATTTATCTTTCTGAGCTTAAACTTTGTTAAAAACTACATCTTACCCACCTTGACATACACATGACTTATGCTTCGAATTTTGTCTTTGCATGTCTAATACAGAATAGCATTACATCCATCCCAGTTGGTAACCCTCAAAACTGGCTGCTTTATGCCATCAGACGCTTTGGCCATCAGCCATCTACTACCAATATCTCTCCTGATGAAGAGAAGGTGAAGGATGAAGTCTTAAATCAGAATACTGTGACAAGGGAAAATGCCTCGATGTGTAGCCACGAAACCTTCGACGTTTGCATCGATAAGATGTGTAGATCAGACAATCTTACAGCTGCTGCTCAACTACTTAAATCATTATGTGATAGGAAAATATCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGAGGAGACACTACCCTTTTATGTCAAGTATTTAAAGATTCCCTTGTTTCCCGTAAACCGTTGAGTTCGACCTCGTACATGAATTTTGCCAAGGCCTTTGCCAGGACAGATGATAGTAGCAAGCTACTGGAATATGTCAAAGAAATAATCGAGATGACGTTTCCAAACTTCCTGGTCATAAACAGAATAATCTTCGCCTTCTCCGAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATATAGACCAGATTTGTACACATATAACATCATTTTGGATGCGCTAGGTCGTGCAGGTCGAATGGATGAAATTCTTCATATGTTTGTTTCCATGAAAGAAGATGGCATCGCCCCGGATATTGTGTCGTATAATACATTAATAAATAGCTTAAGGAAGGTGGGTAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAGAATTGAACCTGATTTGCTTACTTATACTGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACGTCGAGGAAGCTTTGACACTCCTCAGGGAGATGAAGCTTAAGCATATCCGACCTTCGAGCTATATCTACAAGTCTCTCATTAGTAATTCAATGAAGATTGGGAAGGTGGAGTTGGCTATGAACCTTCTCAAGGAGATGAAATTAAGTTACTCAAAACTTGCTGGTCCAAAGGATTTCAAACGAAAAAGAAGTTAACCAATTACGAGGCTTTTCATGGTGACTTTCAGGCTGATAAACCTGTGGATGCCTTTAATCTTCAAACTGAGATTTTCCAGAATTACTGCTGTCTGTAGGTAATATTTGTACCCATTTATCTACCTCTTTGATGTCTGACATGAAATACAAAGATTAGTTACAGTGATCAGTTGAATTTTACTATTTCTAGTATGTATGCTTCAGAGGGACAGAGTTCGGAATTCAAATCTATATCCATAAATACCATATCTTGACTCGAGCCAACTCAATAAGGAAAACACGACATAAAGAAAGCTCGGAATCTGTTTTATTTATCTGGGTAAAGCTGCTTCTCTCCTTCCCCTCGTAACCTCGGTAAAGCTGCTTGTTTGCTCTTGAACCTTTGACTCTTTTCCCTGACTTGATTTCACGAGATAAAGCAGTTGAGGATTGCAACGTATTTGATCTGGAATTGAGGACGAAGACGAAGATGAAGAATTGATCGATAACTTGAAACTTATTTGCGAGGACGGGTTTGTTGGTTTGAGAGAATTGTACAGAGAATGGGTATGAAGAAACAGTTTCCTTTGAGTGAACAGAAAATCGTTTATATGCAACTTATTGAGCAAACTTGTGGGGATGGAAACCTCAGATCCAGGTTTGGTTGAACAAATTTTACTGTTTAAAAGCCCCTCATGGTTCAGATCTTTCACAGTAGGTTCTCATCAGACATTGAATATGTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGTGGGTGCATAATTCAACCTCTGTCACGGGTTGGGACATAATATCGGCACACTTGTGTTGTCTTGTAATATCTTCAAAAATTTCATTTCAAAGGAAGAGGCCTGAAACACTCGTCTCGTAACGCTCGACCACACTTTGACACATGTATGTGTCATGGAGCTTGTTTAGGTCATAGGGTCCAAGAGTGGTGGAGAACTAACACCATGCCTCCAATCTTTCTCGAGTAGACATTATTTTGGCAAGCGGTCGTACGACCTTATGCATTGTCCGTTGATTATTCA

mRNA sequence

ATGGATTGGAAGAAGAATTCTGTTGTATATCTAAGTTCTGAAGTTGATAGATGTGTAAGAATGTCCAAATTAGAGTTCATGGCAGTAAATAGCATTACATCCATCCCAGTTGGTAACCCTCAAAACTGGCTGCTTTATGCCATCAGACGCTTTGGCCATCAGCCATCTACTACCAATATCTCTCCTGATGAAGAGAAGGTGAAGGATGAAGTCTTAAATCAGAATACTGTGACAAGGGAAAATGCCTCGATGTGTAGCCACGAAACCTTCGACGTTTGCATCGATAAGATGTGTAGATCAGACAATCTTACAGCTGCTGCTCAACTACTTAAATCATTATGTGATAGGAAAATATCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGAGGAGACACTACCCTTTTATGTCAAGTATTTAAAGATTCCCTTGTTTCCCGTAAACCGTTGAGTTCGACCTCGTACATGAATTTTGCCAAGGCCTTTGCCAGGACAGATGATAGTAGCAAGCTACTGGAATATGTCAAAGAAATAATCGAGATGACGTTTCCAAACTTCCTGGTCATAAACAGAATAATCTTCGCCTTCTCCGAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATATAGACCAGATTTGTACACATATAACATCATTTTGGATGCGCTAGGTCGTGCAGGTCGAATGGATGAAATTCTTCATATGTTTGTTTCCATGAAAGAAGATGGCATCGCCCCGGATATTGTGTCGTATAATACATTAATAAATAGCTTAAGGAAGGTGGGTAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAGAATTGAACCTGATTTGCTTACTTATACTGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACGTCGAGGAAGCTTTGACACTCCTCAGGGAGATGAAGCTTAAGCATATCCGACCTTCGAGCTATATCTACAAGTCTCTCATTAGTAATTCAATGAAGATTGGGAAGGTGGAGTTGGCTATGAACCTTCTCAAGGAGATGAAATTAAGTTACTCAAAACTTGCTGGTCCAAAGGATTTCAAACGAAAAAGAAGTTAACCAATTACGAGGCTTTTCATGGTGACTTTCAGGCTGATAAACCTGTGGATGCCTTTAATCTTCAAACTGAGATTTTCCAGAATTACTGCTGTCTGTAGTATGTATGCTTCAGAGGGACAGAGTTCGGAATTCAAATCTATATCCATAAATACCATATCTTGACTCGAGCCAACTCAATAAGGAAAACACGACATAAAGAAAGCTCGGAATCTGTTTTATTTATCTGGGTAAAGCTGCTTCTCTCCTTCCCCTCGTAACCTCGGTAAAGCTGCTTGTTTGCTCTTGAACCTTTGACTCTTTTCCCTGACTTGATTTCACGAGATAAAGCAGTTGAGGATTGCAACGTATTTGATCTGGAATTGAGGACGAAGACGAAGATGAAGAATTGATCGATAACTTGAAACTTATTTGCGAGGACGGGTTTGTTGGTTTGAGAGAATTGTACAGAGAATGGGTATGAAGAAACAGTTTCCTTTGAGTGAACAGAAAATCGTTTATATGCAACTTATTGAGCAAACTTGTGGGGATGGAAACCTCAGATCCAGGTTTGGTTGAACAAATTTTACTGTTTAAAAGCCCCTCATGGTTCAGATCTTTCACAGTAGGTTCTCATCAGACATTGAATATGTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGTGGGTGCATAATTCAACCTCTGTCACGGGTTGGGACATAATATCGGCACACTTGTGTTGTCTTGTAATATCTTCAAAAATTTCATTTCAAAGGAAGAGGCCTGAAACACTCGTCTCGTAACGCTCGACCACACTTTGACACATGTATGTGTCATGGAGCTTGTTTAGGTCATAGGGTCCAAGAGTGGTGGAGAACTAACACCATGCCTCCAATCTTTCTCGAGTAGACATTATTTTGGCAAGCGGTCGTACGACCTTATGCATTGTCCGTTGATTATTCA

Coding sequence (CDS)

ATGGATTGGAAGAAGAATTCTGTTGTATATCTAAGTTCTGAAGTTGATAGATGTGTAAGAATGTCCAAATTAGAGTTCATGGCAGTAAATAGCATTACATCCATCCCAGTTGGTAACCCTCAAAACTGGCTGCTTTATGCCATCAGACGCTTTGGCCATCAGCCATCTACTACCAATATCTCTCCTGATGAAGAGAAGGTGAAGGATGAAGTCTTAAATCAGAATACTGTGACAAGGGAAAATGCCTCGATGTGTAGCCACGAAACCTTCGACGTTTGCATCGATAAGATGTGTAGATCAGACAATCTTACAGCTGCTGCTCAACTACTTAAATCATTATGTGATAGGAAAATATCTCTTAGCTCCTCCAAGGCATATGATATGGTTTTGCTTGCAGCAAGTGAAAGAGGAGACACTACCCTTTTATGTCAAGTATTTAAAGATTCCCTTGTTTCCCGTAAACCGTTGAGTTCGACCTCGTACATGAATTTTGCCAAGGCCTTTGCCAGGACAGATGATAGTAGCAAGCTACTGGAATATGTCAAAGAAATAATCGAGATGACGTTTCCAAACTTCCTGGTCATAAACAGAATAATCTTCGCCTTCTCCGAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATATAGACCAGATTTGTACACATATAACATCATTTTGGATGCGCTAGGTCGTGCAGGTCGAATGGATGAAATTCTTCATATGTTTGTTTCCATGAAAGAAGATGGCATCGCCCCGGATATTGTGTCGTATAATACATTAATAAATAGCTTAAGGAAGGTGGGTAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAGAATTGAACCTGATTTGCTTACTTATACTGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACGTCGAGGAAGCTTTGACACTCCTCAGGGAGATGAAGCTTAAGCATATCCGACCTTCGAGCTATATCTACAAGTCTCTCATTAGTAATTCAATGAAGATTGGGAAGGTGGAGTTGGCTATGAACCTTCTCAAGGAGATGAAATTAAGTTACTCAAAACTTGCTGGTCCAAAGGATTTCAAACGAAAAAGAAGTTAA

Protein sequence

MDWKKNSVVYLSSEVDRCVRMSKLEFMAVNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQNTVTRENASMCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS

Homology

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BLAST of Cp4.1LG20g07430 vs. ExPASy Swiss-Prot
Match: Q5BIV3 (Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana OX=3702 GN=At1g11900 PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.8e-63
Identity = 142/316 (44.94%), Postives = 206/316 (65.19%), Query Frame = 0


Query: 63  DEEKVKDEVLNQNTVTRENASMCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSS 122
           DEE++  +++N    +   + + S   +   ++K  R  NL+ A  LL+SL ++ I L  
Sbjct: 49  DEEELLKKIVNH---SESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICLPI 108

Query: 123 SKAYDMVLLAASERGDTTLLCQVFKDSLV--SRKPLSSTSYMNFAKAFARTDDSSKLLEY 182
           S  +  +L AA E  D  L C+VF++ L+   ++PLSS  Y+N A+AF  TDD + L   
Sbjct: 109 S-VFKNLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFINTDDCTYLTSL 168

Query: 183 VKEIIEMTFP-NFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGR 242
           +KEI E + P   +V+NRIIFAF+E R+IDK L I  +MK    +PD+ TYN +LD LGR
Sbjct: 169 LKEISESSLPYRLIVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGR 228

Query: 243 AGRMDEILHMFVSMKED-GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLL 302
           AG ++EIL +  +MKED  ++ +I++YNT++N +RK  R DMCL+ + EMV   IEPDLL
Sbjct: 229 AGLVNEILGVLSTMKEDCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLL 288

Query: 303 TYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEM 362
           +YTA+I+S GRSGNV+E+L L  EMK + IRPS Y+Y++LI    K G  + A+ L  E+
Sbjct: 289 SYTAVIDSLGRSGNVKESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQLSDEL 348

Query: 363 KLSYS-KLAGPKDFKR 374
           K + S  LAGP+DFKR
Sbjct: 349 KNTSSLDLAGPQDFKR 360

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BLAST of Cp4.1LG20g07430 vs. ExPASy Swiss-Prot
Match: Q9ZU27 (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-25
Identity = 64/201 (31.84%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 160 SYMNFAKAFARTDDSSKLLEYVKEIIEM-TFPNFLVINRIIFAFSECREIDKALQIFNQM 219
           SYM+  ++      + + +E + +I E     + ++ N +  A  + ++I     +F +M
Sbjct: 409 SYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKM 468

Query: 220 KLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRL 279
           K     PD++TYNI++ + GR G +DE +++F  ++     PDI+SYN+LIN L K G +
Sbjct: 469 KKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDV 528

Query: 280 DMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSL 339
           D   + F+EM    + PD++TY+ L+E FG++  VE A +L  EM +K  +P+   Y  L
Sbjct: 529 DEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNIL 588

Query: 340 ISNSMKIGKVELAMNLLKEMK 360
           +    K G+   A++L  +MK
Sbjct: 589 LDCLEKNGRTAEAVDLYSKMK 609

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BLAST of Cp4.1LG20g07430 vs. ExPASy Swiss-Prot
Match: Q9SXD1 (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-24
Identity = 71/274 (25.91%), Postives = 139/274 (50.73%), Query Frame = 0


Query: 89  TFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLCQVFKD 148
           T+   I  +C     + A++LL  + +RKI+      +  ++ A  + G      +++ +
Sbjct: 293 TYSSLISCLCNYGRWSDASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAEKLYDE 352

Query: 149 SLVSRKPLSSTSYMNFAKAFA---RTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFSEC 208
            +      S  +Y +    F    R D++ ++ E++  + +  FP+ +  N +I  F + 
Sbjct: 353 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVTYNTLIKGFCKY 412

Query: 209 REIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSY 268
           + +++ +++F +M       +  TYNI++  L +AG  D    +F  M  DG+ P+I++Y
Sbjct: 413 KRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTY 472

Query: 269 NTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKL 328
           NTL++ L K G+L+  ++ F  +   ++EP + TY  +IE   ++G VE+   L   + L
Sbjct: 473 NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 532

Query: 329 KHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 360
           K ++P    Y ++IS   + G  E A  L KEMK
Sbjct: 533 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

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BLAST of Cp4.1LG20g07430 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 2.8e-24
Identity = 72/274 (26.28%), Postives = 139/274 (50.73%), Query Frame = 0


Query: 89  TFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLCQVFKD 148
           T++  I  +C     + A++LL  + +RKI+  +   +  ++ A  + G      +++ +
Sbjct: 292 TYNSLIRCLCNYGRWSDASRLLSDMIERKIN-PNVVTFSALIDAFVKEGKLVEAEKLYDE 351

Query: 149 SLVSRKPLSSTSYMNFAKAFA---RTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFSEC 208
            +         +Y +    F    R D++  + E +  I +  FPN +  N +I  F + 
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKA 411

Query: 209 REIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSY 268
           + +++ +++F +M       +  TYN ++  L +AG  D    +F  M  DG+ PDI++Y
Sbjct: 412 KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITY 471

Query: 269 NTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKL 328
           + L++ L K G+L+  L+ F  +   ++EPD+ TY  +IE   ++G VE+   L   + L
Sbjct: 472 SILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 531

Query: 329 KHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 360
           K ++P+  IY ++IS   + G  E A  L +EMK
Sbjct: 532 KGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

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BLAST of Cp4.1LG20g07430 vs. ExPASy Swiss-Prot
Match: Q9SIC9 (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-23
Identity = 59/164 (35.98%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 196 NRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKE 255
           N ++ A  +  ++D A +I  QM +    P++ +Y+ ++D   +AGR DE L++F  M+ 
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 256 DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEE 315
            GIA D VSYNTL++   KVGR +  L   REM ++ I+ D++TY AL+  +G+ G  +E
Sbjct: 438 LGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497

Query: 316 ALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 360
              +  EMK +H+ P+   Y +LI    K G  + AM + +E K
Sbjct: 498 VKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541

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BLAST of Cp4.1LG20g07430 vs. NCBI nr
Match: XP_023518970.1 (pentatricopeptide repeat-containing protein At1g11900 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 675 bits (1741), Expect = 1.58e-243
Identity = 348/353 (98.58%), Postives = 349/353 (98.87%), Query Frame = 0


Query: 24  LEFMAVNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQNTVTRENAS 83
           L +   NSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQNTVTRENAS
Sbjct: 16  LHYSYTNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQNTVTRENAS 75

Query: 84  MCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC 143
           MCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC
Sbjct: 76  MCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC 135

Query: 144 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 203
           QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS
Sbjct: 136 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 195

Query: 204 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 263
           ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV
Sbjct: 196 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 255

Query: 264 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 323
           SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM
Sbjct: 256 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 315

Query: 324 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 376
           KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS
Sbjct: 316 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 368

[Close]

BLAST of Cp4.1LG20g07430 vs. NCBI nr
Match: KAG6583593.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 667 bits (1721), Expect = 1.76e-240
Identity = 343/353 (97.17%), Postives = 347/353 (98.30%), Query Frame = 0


Query: 24  LEFMAVNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQNTVTRENAS 83
           L +   NSITS+PVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQ T TRENAS
Sbjct: 16  LHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQITATRENAS 75

Query: 84  MCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC 143
           MCSHETFD+CIDKMCRS+NLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC
Sbjct: 76  MCSHETFDICIDKMCRSNNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC 135

Query: 144 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 203
           QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS
Sbjct: 136 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 195

Query: 204 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 263
           ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV
Sbjct: 196 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 255

Query: 264 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 323
           SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM
Sbjct: 256 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 315

Query: 324 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 376
           KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS
Sbjct: 316 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 368

[Close]

BLAST of Cp4.1LG20g07430 vs. NCBI nr
Match: XP_022964991.1 (pentatricopeptide repeat-containing protein At1g11900-like [Cucurbita moschata])

HSP 1 Score: 665 bits (1716), Expect = 1.02e-239
Identity = 342/353 (96.88%), Postives = 346/353 (98.02%), Query Frame = 0


Query: 24  LEFMAVNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQNTVTRENAS 83
           L +   NSITS+PVGNPQNWLLYAIRRFGHQPSTTNISPDEEKV+DEVLNQ T TRENAS
Sbjct: 16  LHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQITATRENAS 75

Query: 84  MCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC 143
           MCSHETFD+CIDKMCRSDNLTAAAQLLKS CDRKISLSSSKAYDMVLLAASERGDTTLLC
Sbjct: 76  MCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAASERGDTTLLC 135

Query: 144 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 203
           QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS
Sbjct: 136 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 195

Query: 204 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 263
           ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV
Sbjct: 196 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 255

Query: 264 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 323
           SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM
Sbjct: 256 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 315

Query: 324 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 376
           KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS
Sbjct: 316 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 368

[Close]

BLAST of Cp4.1LG20g07430 vs. NCBI nr
Match: XP_022970322.1 (pentatricopeptide repeat-containing protein At1g11900 [Cucurbita maxima])

HSP 1 Score: 660 bits (1702), Expect = 1.38e-237
Identity = 342/353 (96.88%), Postives = 343/353 (97.17%), Query Frame = 0


Query: 24  LEFMAVNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQNTVTRENAS 83
           L +   NSITSIPVGNPQNWLLYAIRRFGHQ ST NISPDEEKVKDEVLNQ T TRENAS
Sbjct: 16  LHYSYTNSITSIPVGNPQNWLLYAIRRFGHQSSTNNISPDEEKVKDEVLNQITATRENAS 75

Query: 84  MCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC 143
            CSHETFDVCIDKMCRS NLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC
Sbjct: 76  RCSHETFDVCIDKMCRSGNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC 135

Query: 144 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 203
           QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS
Sbjct: 136 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 195

Query: 204 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 263
           ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV
Sbjct: 196 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 255

Query: 264 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 323
           SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM
Sbjct: 256 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 315

Query: 324 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 376
           KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS
Sbjct: 316 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 368

[Close]

BLAST of Cp4.1LG20g07430 vs. NCBI nr
Match: XP_038893594.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11900 [Benincasa hispida])

HSP 1 Score: 557 bits (1435), Expect = 5.65e-197
Identity = 294/358 (82.12%), Postives = 313/358 (87.43%), Query Frame = 0


Query: 19  VRMSKLEFMAVNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQNTVT 78
           V  + L     NSI S+PVGN Q W LYAIR   HQ S+TNI PDE KV DEVLNQ    
Sbjct: 8   VHRNLLHCSYANSIASVPVGNSQFWPLYAIRLLSHQSSSTNICPDEVKVGDEVLNQIIAP 67

Query: 79  RENASMCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGD 138
           RENAS CSHETFD CIDKMCR  +L AAAQLLKSLCD KI LSSSKAYDMVLLAASE GD
Sbjct: 68  RENASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKAYDMVLLAASESGD 127

Query: 139 TTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRI 198
           TTLL QVFKDSLVS K LSSTSY +FA AF RT+DS+KLLEYVKEIIEMTFPN +VINRI
Sbjct: 128 TTLLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEIIEMTFPNCIVINRI 187

Query: 199 IFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGI 258
           IFAFS+CREIDKALQIFNQMKLLS RPDLYTYNIILD LGRAGR+DEILH+FVSMKEDGI
Sbjct: 188 IFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRVDEILHLFVSMKEDGI 247

Query: 259 APDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALT 318
           APDIVSYNTLINS RKVGRLDMCL+YF+EMVA+RIEPDLLTYTALIESFGRSGN+EEA T
Sbjct: 248 APDIVSYNTLINSFRKVGRLDMCLVYFKEMVAVRIEPDLLTYTALIESFGRSGNIEEAWT 307

Query: 319 LLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 376
           LLREMKLK+I PSSYIYKSLI NSMK+GKVELAMNLLKEMKLS SKLAGPKDFKR++S
Sbjct: 308 LLREMKLKNICPSSYIYKSLIGNSMKMGKVELAMNLLKEMKLSDSKLAGPKDFKRRKS 365

[Close]

BLAST of Cp4.1LG20g07430 vs. ExPASy TrEMBL
Match: A0A6J1HKH0 (pentatricopeptide repeat-containing protein At1g11900-like OS=Cucurbita moschata OX=3662 GN=LOC111464935 PE=4 SV=1)

HSP 1 Score: 665 bits (1716), Expect = 4.93e-240
Identity = 342/353 (96.88%), Postives = 346/353 (98.02%), Query Frame = 0


Query: 24  LEFMAVNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQNTVTRENAS 83
           L +   NSITS+PVGNPQNWLLYAIRRFGHQPSTTNISPDEEKV+DEVLNQ T TRENAS
Sbjct: 16  LHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQITATRENAS 75

Query: 84  MCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC 143
           MCSHETFD+CIDKMCRSDNLTAAAQLLKS CDRKISLSSSKAYDMVLLAASERGDTTLLC
Sbjct: 76  MCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAASERGDTTLLC 135

Query: 144 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 203
           QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS
Sbjct: 136 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 195

Query: 204 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 263
           ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV
Sbjct: 196 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 255

Query: 264 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 323
           SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM
Sbjct: 256 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 315

Query: 324 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 376
           KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS
Sbjct: 316 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 368

[Close]

BLAST of Cp4.1LG20g07430 vs. ExPASy TrEMBL
Match: A0A6J1HYS7 (pentatricopeptide repeat-containing protein At1g11900 OS=Cucurbita maxima OX=3661 GN=LOC111469320 PE=4 SV=1)

HSP 1 Score: 660 bits (1702), Expect = 6.69e-238
Identity = 342/353 (96.88%), Postives = 343/353 (97.17%), Query Frame = 0


Query: 24  LEFMAVNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQNTVTRENAS 83
           L +   NSITSIPVGNPQNWLLYAIRRFGHQ ST NISPDEEKVKDEVLNQ T TRENAS
Sbjct: 16  LHYSYTNSITSIPVGNPQNWLLYAIRRFGHQSSTNNISPDEEKVKDEVLNQITATRENAS 75

Query: 84  MCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC 143
            CSHETFDVCIDKMCRS NLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC
Sbjct: 76  RCSHETFDVCIDKMCRSGNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLC 135

Query: 144 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 203
           QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS
Sbjct: 136 QVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFS 195

Query: 204 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 263
           ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV
Sbjct: 196 ECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIV 255

Query: 264 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 323
           SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM
Sbjct: 256 SYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREM 315

Query: 324 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 376
           KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS
Sbjct: 316 KLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKRS 368

[Close]

BLAST of Cp4.1LG20g07430 vs. ExPASy TrEMBL
Match: A0A6J1D2E8 (pentatricopeptide repeat-containing protein At1g11900-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016680 PE=3 SV=1)

HSP 1 Score: 534 bits (1375), Expect = 1.40e-187
Identity = 280/354 (79.10%), Postives = 306/354 (86.44%), Query Frame = 0


Query: 24  LEFMAVNSITSIPVGNPQNWLLYAI--RRFGHQPSTTNISPDEEKVKDEVLNQNTVTREN 83
           L +   N I S PVG+PQ WL +A   +RF HQ   T+ SPDEEKV DEVLNQ   TR+N
Sbjct: 48  LHYPYTNCIASFPVGDPQIWLFFANMGKRFSHQSYPTDTSPDEEKVIDEVLNQIVATRDN 107

Query: 84  ASMCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTL 143
           AS  SHETFD CI KMCRS NL AAAQLLKSLCD KISLS+SKAYDMVLLAASERGDT+L
Sbjct: 108 ASRSSHETFDACIYKMCRSGNLAAAAQLLKSLCDGKISLSASKAYDMVLLAASERGDTSL 167

Query: 144 LCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFA 203
            CQVFKD LVS K LSS +YMN AKAF  T+D  KLLEYVKE+IEMTFPN +VIN+IIFA
Sbjct: 168 FCQVFKDCLVSCKSLSSATYMNLAKAFISTNDVGKLLEYVKEVIEMTFPNLIVINKIIFA 227

Query: 204 FSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPD 263
           FS+CREI+KAL+IFNQMKLLS +PDLYTYNIILD LGRAGRMDEILHMFVSMKE GIAPD
Sbjct: 228 FSKCREIEKALRIFNQMKLLSCKPDLYTYNIILDMLGRAGRMDEILHMFVSMKEAGIAPD 287

Query: 264 IVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLR 323
           IVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTA+IESFGRSGN+EEAL LLR
Sbjct: 288 IVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTAMIESFGRSGNIEEALGLLR 347

Query: 324 EMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKR 375
           EMKLK++ PS+YIYKSLISNSMKIGKVELAM+LL E+KLS S LA PKDFKR++
Sbjct: 348 EMKLKNVYPSNYIYKSLISNSMKIGKVELAMSLLNELKLSGSNLANPKDFKRRK 401

[Close]

BLAST of Cp4.1LG20g07430 vs. ExPASy TrEMBL
Match: A0A6J1D272 (pentatricopeptide repeat-containing protein At1g11900-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016680 PE=3 SV=1)

HSP 1 Score: 523 bits (1348), Expect = 3.95e-184
Identity = 274/340 (80.59%), Postives = 299/340 (87.94%), Query Frame = 0


Query: 38  GNPQNWLLYAI--RRFGHQPSTTNISPDEEKVKDEVLNQNTVTRENASMCSHETFDVCID 97
           G+PQ WL +A   +RF HQ   T+ SPDEEKV DEVLNQ   TR+NAS  SHETFD CI 
Sbjct: 20  GDPQIWLFFANMGKRFSHQSYPTDTSPDEEKVIDEVLNQIVATRDNASRSSHETFDACIY 79

Query: 98  KMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLCQVFKDSLVSRKP 157
           KMCRS NL AAAQLLKSLCD KISLS+SKAYDMVLLAASERGDT+L CQVFKD LVS K 
Sbjct: 80  KMCRSGNLAAAAQLLKSLCDGKISLSASKAYDMVLLAASERGDTSLFCQVFKDCLVSCKS 139

Query: 158 LSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFSECREIDKALQIF 217
           LSS +YMN AKAF  T+D  KLLEYVKE+IEMTFPN +VIN+IIFAFS+CREI+KAL+IF
Sbjct: 140 LSSATYMNLAKAFISTNDVGKLLEYVKEVIEMTFPNLIVINKIIFAFSKCREIEKALRIF 199

Query: 218 NQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKV 277
           NQMKLLS +PDLYTYNIILD LGRAGRMDEILHMFVSMKE GIAPDIVSYNTLINSLRKV
Sbjct: 200 NQMKLLSCKPDLYTYNIILDMLGRAGRMDEILHMFVSMKEAGIAPDIVSYNTLINSLRKV 259

Query: 278 GRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIY 337
           GRLDMCLIYFREMVAMRIEPDLLTYTA+IESFGRSGN+EEAL LLREMKLK++ PS+YIY
Sbjct: 260 GRLDMCLIYFREMVAMRIEPDLLTYTAMIESFGRSGNIEEALGLLREMKLKNVYPSNYIY 319

Query: 338 KSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKR 375
           KSLISNSMKIGKVELAM+LL E+KLS S LA PKDFKR++
Sbjct: 320 KSLISNSMKIGKVELAMSLLNELKLSGSNLANPKDFKRRK 359

[Close]

BLAST of Cp4.1LG20g07430 vs. ExPASy TrEMBL
Match: A0A5D3DB98 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00260 PE=4 SV=1)

HSP 1 Score: 514 bits (1323), Expect = 2.93e-178
Identity = 277/379 (73.09%), Postives = 310/379 (81.79%), Query Frame = 0


Query: 14  EVDRCVRMSKLEFMAV-----------------NSITSIPVGNPQNWLLYAIRRFGHQPS 73
           +VD CV MS LEF+A+                 N I SIPVGN Q W LYAI+ F HQ S
Sbjct: 39  KVDGCVTMSDLEFIAIEILASGLLMIQSTPLRINRIASIPVGNSQIWPLYAIKCFSHQSS 98

Query: 74  TTNISPDEEKVKDEVLNQNTVTRENASMCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDR 133
           +TNISPDE KV DEVLNQ    RENAS CSHE  D CIDK+C   +L AAAQLLKSLC+ 
Sbjct: 99  STNISPDEVKVGDEVLNQIIAPRENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNE 158

Query: 134 KISLSSSKAYDMVLLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSK 193
           KISL+SSKAYDMVLLAASERGDT LLCQVFK ++VS K LSS SYM+FA+AF +T+DSSK
Sbjct: 159 KISLNSSKAYDMVLLAASERGDTPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSK 218

Query: 194 LLEYVKEIIEMTFPNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDA 253
           LLE VKEI+E+T  N  VINRIIFAFS+CREIDKA QIFNQMK LS  PDLYTYNI+LD 
Sbjct: 219 LLECVKEIVEVTSQNCSVINRIIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDM 278

Query: 254 LGRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPD 313
           LGRAGR++EILH+FVSMK++GIAPDIVSYNTLINSLRKVGRLD+ LIYFREMVAM I+PD
Sbjct: 279 LGRAGRVNEILHLFVSMKDEGIAPDIVSYNTLINSLRKVGRLDISLIYFREMVAMGIKPD 338

Query: 314 LLTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLK 373
           LLTYTALIESFGR GN+EEALTLL+EMKLK I PSSYIYKSLI+NS K+GKVELA NLL 
Sbjct: 339 LLTYTALIESFGRFGNIEEALTLLKEMKLKKICPSSYIYKSLIANSKKMGKVELATNLLN 398

Query: 374 EMKLSYSKLAGPKDFKRKR 375
           EMKLS SKLA P+DFKR++
Sbjct: 399 EMKLSESKLARPEDFKRRK 417

[Close]

BLAST of Cp4.1LG20g07430 vs. TAIR 10
Match: AT1G11900.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 244.6 bits (623), Expect = 1.3e-64
Identity = 142/316 (44.94%), Postives = 206/316 (65.19%), Query Frame = 0


Query: 63  DEEKVKDEVLNQNTVTRENASMCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSS 122
           DEE++  +++N    +   + + S   +   ++K  R  NL+ A  LL+SL ++ I L  
Sbjct: 49  DEEELLKKIVNH---SESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICLPI 108

Query: 123 SKAYDMVLLAASERGDTTLLCQVFKDSLV--SRKPLSSTSYMNFAKAFARTDDSSKLLEY 182
           S  +  +L AA E  D  L C+VF++ L+   ++PLSS  Y+N A+AF  TDD + L   
Sbjct: 109 S-VFKNLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFINTDDCTYLTSL 168

Query: 183 VKEIIEMTFP-NFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGR 242
           +KEI E + P   +V+NRIIFAF+E R+IDK L I  +MK    +PD+ TYN +LD LGR
Sbjct: 169 LKEISESSLPYRLIVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGR 228

Query: 243 AGRMDEILHMFVSMKED-GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLL 302
           AG ++EIL +  +MKED  ++ +I++YNT++N +RK  R DMCL+ + EMV   IEPDLL
Sbjct: 229 AGLVNEILGVLSTMKEDCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLL 288

Query: 303 TYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEM 362
           +YTA+I+S GRSGNV+E+L L  EMK + IRPS Y+Y++LI    K G  + A+ L  E+
Sbjct: 289 SYTAVIDSLGRSGNVKESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQLSDEL 348

Query: 363 KLSYS-KLAGPKDFKR 374
           K + S  LAGP+DFKR
Sbjct: 349 KNTSSLDLAGPQDFKR 360

[Close]

BLAST of Cp4.1LG20g07430 vs. TAIR 10
Match: AT1G51965.1 (ABA Overly-Sensitive 5 )

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-26
Identity = 64/201 (31.84%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 160 SYMNFAKAFARTDDSSKLLEYVKEIIEM-TFPNFLVINRIIFAFSECREIDKALQIFNQM 219
           SYM+  ++      + + +E + +I E     + ++ N +  A  + ++I     +F +M
Sbjct: 409 SYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKM 468

Query: 220 KLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSYNTLINSLRKVGRL 279
           K     PD++TYNI++ + GR G +DE +++F  ++     PDI+SYN+LIN L K G +
Sbjct: 469 KKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDV 528

Query: 280 DMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKLKHIRPSSYIYKSL 339
           D   + F+EM    + PD++TY+ L+E FG++  VE A +L  EM +K  +P+   Y  L
Sbjct: 529 DEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNIL 588

Query: 340 ISNSMKIGKVELAMNLLKEMK 360
           +    K G+   A++L  +MK
Sbjct: 589 LDCLEKNGRTAEAVDLYSKMK 609

[Close]

BLAST of Cp4.1LG20g07430 vs. TAIR 10
Match: AT1G62670.1 (rna processing factor 2 )

HSP 1 Score: 115.5 bits (288), Expect = 9.0e-26
Identity = 71/274 (25.91%), Postives = 139/274 (50.73%), Query Frame = 0


Query: 89  TFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLCQVFKD 148
           T+   I  +C     + A++LL  + +RKI+      +  ++ A  + G      +++ +
Sbjct: 293 TYSSLISCLCNYGRWSDASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAEKLYDE 352

Query: 149 SLVSRKPLSSTSYMNFAKAFA---RTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFSEC 208
            +      S  +Y +    F    R D++ ++ E++  + +  FP+ +  N +I  F + 
Sbjct: 353 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVTYNTLIKGFCKY 412

Query: 209 REIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSY 268
           + +++ +++F +M       +  TYNI++  L +AG  D    +F  M  DG+ P+I++Y
Sbjct: 413 KRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTY 472

Query: 269 NTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKL 328
           NTL++ L K G+L+  ++ F  +   ++EP + TY  +IE   ++G VE+   L   + L
Sbjct: 473 NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 532

Query: 329 KHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 360
           K ++P    Y ++IS   + G  E A  L KEMK
Sbjct: 533 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

[Close]

BLAST of Cp4.1LG20g07430 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-25
Identity = 72/274 (26.28%), Postives = 139/274 (50.73%), Query Frame = 0


Query: 89  TFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASERGDTTLLCQVFKD 148
           T++  I  +C     + A++LL  + +RKI+  +   +  ++ A  + G      +++ +
Sbjct: 292 TYNSLIRCLCNYGRWSDASRLLSDMIERKIN-PNVVTFSALIDAFVKEGKLVEAEKLYDE 351

Query: 149 SLVSRKPLSSTSYMNFAKAFA---RTDDSSKLLEYVKEIIEMTFPNFLVINRIIFAFSEC 208
            +         +Y +    F    R D++  + E +  I +  FPN +  N +I  F + 
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKA 411

Query: 209 REIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKEDGIAPDIVSY 268
           + +++ +++F +M       +  TYN ++  L +AG  D    +F  M  DG+ PDI++Y
Sbjct: 412 KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITY 471

Query: 269 NTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEALTLLREMKL 328
           + L++ L K G+L+  L+ F  +   ++EPD+ TY  +IE   ++G VE+   L   + L
Sbjct: 472 SILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 531

Query: 329 KHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 360
           K ++P+  IY ++IS   + G  E A  L +EMK
Sbjct: 532 KGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

[Close]

BLAST of Cp4.1LG20g07430 vs. TAIR 10
Match: AT2G31400.1 (genomes uncoupled 1 )

HSP 1 Score: 112.1 bits (279), Expect = 9.9e-25
Identity = 59/164 (35.98%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 196 NRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKE 255
           N ++ A  +  ++D A +I  QM +    P++ +Y+ ++D   +AGR DE L++F  M+ 
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 256 DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEE 315
            GIA D VSYNTL++   KVGR +  L   REM ++ I+ D++TY AL+  +G+ G  +E
Sbjct: 438 LGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497

Query: 316 ALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMK 360
              +  EMK +H+ P+   Y +LI    K G  + AM + +E K
Sbjct: 498 VKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g07430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5BIV3	1.8e-63	44.94	Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana OX...	[more]
Q9ZU27	2.5e-25	31.84	Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidop...	[more]
Q9SXD1	1.3e-24	25.91	Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop...	[more]
Q9LQ14	2.8e-24	26.28	Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop...	[more]
Q9SIC9	1.4e-23	35.98	Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG20g07430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518970.1	1.58e-243	98.58	pentatricopeptide repeat-containing protein At1g11900 [Cucurbita pepo subsp. pep...	[more]
KAG6583593.1	1.76e-240	97.17	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022964991.1	1.02e-239	96.88	pentatricopeptide repeat-containing protein At1g11900-like [Cucurbita moschata]	[more]
XP_022970322.1	1.38e-237	96.88	pentatricopeptide repeat-containing protein At1g11900 [Cucurbita maxima]	[more]
XP_038893594.1	5.65e-197	82.12	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11900 [Beni...	[more]

BLAST of Cp4.1LG20g07430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HKH0	4.93e-240	96.88	pentatricopeptide repeat-containing protein At1g11900-like OS=Cucurbita moschata...	[more]
A0A6J1HYS7	6.69e-238	96.88	pentatricopeptide repeat-containing protein At1g11900 OS=Cucurbita maxima OX=366...	[more]
A0A6J1D2E8	1.40e-187	79.10	pentatricopeptide repeat-containing protein At1g11900-like isoform X1 OS=Momordi...	[more]
A0A6J1D272	3.95e-184	80.59	pentatricopeptide repeat-containing protein At1g11900-like isoform X2 OS=Momordi...	[more]
A0A5D3DB98	2.93e-178	73.09	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG20g07430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11900.1	1.3e-64	44.94	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G51965.1	1.8e-26	31.84	ABA Overly-Sensitive 5	[more]
AT1G62670.1	9.0e-26	25.91	rna processing factor 2	[more]
AT1G62930.1	2.0e-25	26.28	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G31400.1	9.9e-25	35.98	genomes uncoupled 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 225..272 e-value: 1.6E-12 score: 47.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 196..226 e-value: 0.0015 score: 16.6 coord: 263..296 e-value: 1.1E-6 score: 26.4 coord: 228..262 e-value: 3.5E-10 score: 37.4 coord: 299..331 e-value: 1.9E-8 score: 32.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 196..219 e-value: 0.12 score: 12.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 285..340 e-value: 9.2E-10 score: 38.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 261..295 score: 11.224429
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 191..225 score: 8.845827
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 296..330 score: 12.495939
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 226..260 score: 13.033043
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 148..276 e-value: 1.8E-27 score: 97.9 coord: 277..366 e-value: 7.8E-20 score: 73.0
None	No IPR available	PANTHER	PTHR47942:SF17	OS05G0481800 PROTEIN	coord: 31..376
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 31..376
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 160..355

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g07430.1	Cp4.1LG20g07430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding