Cp4.1LG20g07400 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g07400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionCyclin-dependent protein kinase inhibitor SMR2
LocationCp4.1LG20: 6129524 .. 6129847 (+)
RNA-Seq ExpressionCp4.1LG20g07400
SyntenyCp4.1LG20g07400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAAAAGAACCACCAAAGCCACCGGAGGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCAACATCGAATTCCCACCGCACGAAGCTACCCGACGACGCCGAGAAAGCGGAAGGTTGCGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTCGAGGTCGCCGGACGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTACAGGGTCTCTTCTACCAAAAGAAGATTTACAAATATATAA

mRNA sequence

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAAAAGAACCACCAAAGCCACCGGAGGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCAACATCGAATTCCCACCGCACGAAGCTACCCGACGACGCCGAGAAAGCGGAAGGTTGCGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTCGAGGTCGCCGGACGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTACAGGGTCTCTTCTACCAAAAGAAGATTTACAAATATATAA

Coding sequence (CDS)

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAAAAGAACCACCAAAGCCACCGGAGGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCAACATCGAATTCCCACCGCACGAAGCTACCCGACGACGCCGAGAAAGCGGAAGGTTGCGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTCGAGGTCGCCGGACGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTACAGGGTCTCTTCTACCAAAAGAAGATTTACAAATATATAA

Protein sequence

MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCGGESCRTPTSLQHRIPTARSYPTTPRKRKVASKRKFSDQSFFEVAGRGEVESLFALFYRVSSTKRRFTNI
Homology
BLAST of Cp4.1LG20g07400 vs. NCBI nr
Match: KAG6583595.1 (hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203 bits (517), Expect = 1.02e-65
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0

Query: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCGGESCRTPTSLQHRIPTARSYPT 60
           MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCGGESCRTPTSL+HRIPTARSYPT
Sbjct: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCGGESCRTPTSLRHRIPTARSYPT 60

Query: 61  TPRKRKVASKRKFSDQSFFEVAGRGEVESLFALFYRVSSTKRRFTNI 107
           TPRKRKVASKRKFSDQSFFEV GRGEVESLFALFYRVSS KRRFTNI
Sbjct: 61  TPRKRKVASKRKFSDQSFFEVTGRGEVESLFALFYRVSSAKRRFTNI 107

BLAST of Cp4.1LG20g07400 vs. NCBI nr
Match: KAG7019295.1 (hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201 bits (510), Expect = 1.19e-64
Identity = 102/107 (95.33%), Postives = 104/107 (97.20%), Query Frame = 0

Query: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCGGESCRTPTSLQHRIPTARSYPT 60
           MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDC GESCRTPTSL+HRIPTARSYPT
Sbjct: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCSGESCRTPTSLRHRIPTARSYPT 60

Query: 61  TPRKRKVASKRKFSDQSFFEVAGRGEVESLFALFYRVSSTKRRFTNI 107
           TPRKRK+ASKRKFSDQSFFEV GRGEVESLFALFYRVSS KRRFTNI
Sbjct: 61  TPRKRKIASKRKFSDQSFFEVTGRGEVESLFALFYRVSSAKRRFTNI 107

BLAST of Cp4.1LG20g07400 vs. NCBI nr
Match: KAG6586014.1 (hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037379.1 hypothetical protein SDJN02_01004, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139 bits (350), Expect = 3.22e-40
Identity = 82/111 (73.87%), Postives = 88/111 (79.28%), Query Frame = 0

Query: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAV----DCGGESCRTPTSLQHRIPTAR 60
           MS+F  SDHQK  EP KP EE DRSKEEDGG EA+    D GGESCRTP+SL+HRIP AR
Sbjct: 1   MSEFQNSDHQKSLEPQKPAEEVDRSKEEDGG-EALLAVEDGGGESCRTPSSLKHRIPAAR 60

Query: 61  SYPTTPRKRKVASKRKFSDQSFFEVAGRGEVESLFALFYRVSSTKRRFTNI 107
           S PTTPRK+KV SKRKFSDQSFFE   R EVESLF LFYRVSS KRR T+I
Sbjct: 61  SCPTTPRKKKVVSKRKFSDQSFFESTRREEVESLFGLFYRVSSGKRRCTSI 110

BLAST of Cp4.1LG20g07400 vs. NCBI nr
Match: KAA0052125.1 (cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98071.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 6.19e-38
Identity = 78/111 (70.27%), Postives = 87/111 (78.38%), Query Frame = 0

Query: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAV----DCGGESCRTPTSLQHRIPTAR 60
           MSQ HKSD +KV E PK  E GDRS EE G GEA+    D  GESCRTPTSL+HRIP A+
Sbjct: 1   MSQIHKSDQEKVLETPKALEYGDRSTEE-GSGEALKAAEDDEGESCRTPTSLRHRIPIAQ 60

Query: 61  SYPTTPRKRKVASKRKFSDQSFFEVAGRGEVESLFALFYRVSSTKRRFTNI 107
           S PTTPRK++VA KRK SDQSFFE  GRGEVESLF LFYRVSS+KRR T++
Sbjct: 61  SCPTTPRKQRVARKRKISDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 110

BLAST of Cp4.1LG20g07400 vs. NCBI nr
Match: KAE8652786.1 (hypothetical protein Csa_022878 [Cucumis sativus])

HSP 1 Score: 109 bits (272), Expect = 3.08e-28
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 0

Query: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCG----GESCRTPTSLQHRIPTAR 60
          MSQFHKSD QKV E P+ PE GDRS EE G GEA+       GESCRTPTS QHRIP A+
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEE-GRGEALKAAEHDDGESCRTPTSPQHRIPIAQ 60

Query: 61 SYPTTPRKRKVASKRKFSDQSFFEVAGRGEV 87
          S PTTPRK++V  KRKFSDQSFFE  GRGE+
Sbjct: 61 SCPTTPRKQRVVRKRKFSDQSFFEATGRGEI 90

BLAST of Cp4.1LG20g07400 vs. ExPASy TrEMBL
Match: A0A5D3BHE9 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00010 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 3.00e-38
Identity = 78/111 (70.27%), Postives = 87/111 (78.38%), Query Frame = 0

Query: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAV----DCGGESCRTPTSLQHRIPTAR 60
           MSQ HKSD +KV E PK  E GDRS EE G GEA+    D  GESCRTPTSL+HRIP A+
Sbjct: 1   MSQIHKSDQEKVLETPKALEYGDRSTEE-GSGEALKAAEDDEGESCRTPTSLRHRIPIAQ 60

Query: 61  SYPTTPRKRKVASKRKFSDQSFFEVAGRGEVESLFALFYRVSSTKRRFTNI 107
           S PTTPRK++VA KRK SDQSFFE  GRGEVESLF LFYRVSS+KRR T++
Sbjct: 61  SCPTTPRKQRVARKRKISDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 110

BLAST of Cp4.1LG20g07400 vs. ExPASy TrEMBL
Match: A0A0A0LV74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 1.85e-28
Identity = 63/90 (70.00%), Postives = 68/90 (75.56%), Query Frame = 0

Query: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCG----GESCRTPTSLQHRIPTAR 60
          MSQFHKSD QKV E P+ PE GDRS EE G GEA+       GESCRTPTS QHRIP A+
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEE-GRGEALKAAEHDDGESCRTPTSPQHRIPIAQ 60

Query: 61 SYPTTPRKRKVASKRKFSDQSFFEVAGRGE 86
          S PTTPRK++V  KRKFSDQSFFE  GRGE
Sbjct: 61 SCPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

BLAST of Cp4.1LG20g07400 vs. ExPASy TrEMBL
Match: A0A6A4M587 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_02734 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.72e-09
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 0

Query: 32  GEAVDCGGESCRTPTSLQHRIPTARSYPTTPRKRK---VASKRKFSDQSFFEVAGRGEVE 91
           G  VD G + C TPTS +H+IPT  S P  P+K     V+ KRK  +  FFE+  R EVE
Sbjct: 32  GNVVDVGDDECHTPTSAEHKIPTILSCPPAPKKPSRSAVSCKRKLCELDFFEIVAREEVE 91

Query: 92  SLFALFYRVSSTKRR 103
           S FA     S  KRR
Sbjct: 92  SFFAAVNLSSVFKRR 106

BLAST of Cp4.1LG20g07400 vs. ExPASy TrEMBL
Match: M5W3L3 (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019744mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.75e-09
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 39  GESCRTPTSLQHRIPTARSYPTTPRKRKVA--SKRKFSDQSFFEVAGRGEVESLFALFYR 98
           G+ CRTPTS  H+IPT +S PTTPRK+  A   KRK +   FFE  GR EVES F   + 
Sbjct: 38  GDDCRTPTSRDHKIPTIQSCPTTPRKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCFE 97

Query: 99  VSS--TKRRFTNI 107
             S   K+R T+I
Sbjct: 98  SPSPRVKKRCTSI 110

BLAST of Cp4.1LG20g07400 vs. ExPASy TrEMBL
Match: A0A251NNT8 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G114400 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.10e-09
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 39  GESCRTPTSLQHRIPTARSYPTTPRKRKVA--SKRKFSDQSFFEVAGRGEVESLFALFYR 98
           G+ CRTPTS  H+IPT +S PTTPRK+  A   KRK +   FFE  GR EVES F   + 
Sbjct: 42  GDDCRTPTSRDHKIPTIQSCPTTPRKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCFE 101

Query: 99  VSS--TKRRFTNI 107
             S   K+R T+I
Sbjct: 102 SPSPRVKKRCTSI 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6583595.11.02e-6597.20hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7019295.11.19e-6495.33hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6586014.13.22e-4073.87hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0052125.16.19e-3870.27cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98... [more]
KAE8652786.13.08e-2869.23hypothetical protein Csa_022878 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5D3BHE93.00e-3870.27Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0LV741.85e-2870.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1[more]
A0A6A4M5872.72e-0946.67Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
M5W3L33.75e-0950.68Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019744m... [more]
A0A251NNT84.10e-0950.68Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G114400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availablePANTHERPTHR33142:SF13CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-LIKEcoord: 6..103
IPR040389Cyclin-dependent protein kinase inhibitor SMRPANTHERPTHR33142CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13coord: 6..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g07400.1Cp4.1LG20g07400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032875 regulation of DNA endoreduplication