Cp4.1LG20g07290 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g07290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L19, chloroplastic-like
Location	Cp4.1LG20: 6224129 .. 6226536 (+)
RNA-Seq Expression	Cp4.1LG20g07290
Synteny	Cp4.1LG20g07290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTTTTTCGATTACTCATCGCTCATGGACTTTCTGTGGGTTATGCAGCTGGAAATCAAGTGCGAAGATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATCGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAATATCCGGAAGCCTTTGTATGTATTTCTGTTTGTTTAAATATTTTGTGCATTATGTAGTATGATATGTTCTTGTTTGTTTTCAAAGGTTCTATAGCTATTCAGTAAATCTACTTCGGTTTTATACATATATAATTTGCGACATTTAGTCTAGTTCGAATTCCAAGCTTTTACGAATTCATTTATGCTTCTTGTTTGAGTTCATAAGCAATGAGGCACAAGTAAATCTCATGATATCGGTCTTGGCCGACACCTGATTGACGGTAGGGGAAAGGGTAATTTGTATAGTAACTTATCAATTGTGTACATTATGCACGTCTCTCTAATACTGACCAGACATGATTGGTGCTAAACGTCTTATTGCTATAAATGAGTATGAGTACATTTGCTAGAACTGGCTTTTGAGTTCAGTTATGGCTTAATCAACAAAACTATGAACTTGTAATAGCCCAAGCCCACCACTATCAGATATTGTCCTCTTTGGACTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAATGCGTTTGCTAGGGAGAGGTTTTCACACCCTTTTAAAGAATGTTTTGTTCTCCTCCCAAACCGTTGTGGGATCTCATAGAACTTCACTATTGTCTAGAACACTTAGTTAGTATGTATCCTATTTTCCTTCACAACAAATTAGGTATAGAGAACCACCTACTCATTCTGTAATTAGTCTGTCTGAAAAAATAATTAGCTCGAGTCGAGCTGATGTCCCTTTTCAAGGGAAAAAAATGTGGTTATAGCTCTTTGCTTCTATGATCCTTTCCAATTGAAGAGCCTTTCATTAATTTCCTTGGCATCTATGGAAATTGGTAATCTTCCTCTTATATACTTCTTTTCTTTCAATATATTGCTGGTTTTTGTATTCATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACAGGAAAAACAGAAAAATTATCAACTATCAACTATCCTCGTGAGATATGATTTCAAAAAATTGTATATATGATCTTTCTGTTGGTTTATGTGTACTCATTGGAAGCAATATCTTTTTATTCAAGAGTCTGTTTTGGAATATATCACTTTGTAACAATTTATCAACTATTTGTCAGAGAAGTATGGGCTCTCAAATGGAATTTGTGCCTTCGAGAAATCATGTAGCTTCAACTTGTTCAGCATTCCAAAGTCTTTGGCAACATTCATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGCAGGGGTATTGCTACGACAAGTTCAATGGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAACACATAATGCAGGTATTTGCATTTCTGAGTACTTTTGGAAAAGAAGTAATTTCATTTTATCGTCCCGTCTGTTTGATTTCGATATATTGTTTTCTTTTCCCCACAGATTTTAGATAAGGAAGCTATTGGGGAAGTAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAGAGTTCATTTCAGTCAAATACTATATCAGCAGTTGTAGATGAGGTTACTGAACAATTTTCTGGCTTTTGCTGTCTTGTGTGAACAGGAAGTACCTGAGAACAAGCGACGTATCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAATGCTGATTTAAAAATCTGATACAAACGTATTAGAACATGATGAACGCTACGATCACACGTGTTGAAGTTGGCGTATTAATATGAACATACATATGTGTTTATTCTTCTTGTGTATGTCTATTTCTGATAGCACTTTGCTTATGACTAAACAAGTGGGTGATGCAGCATGACAGATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTCCCTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCAC

mRNA sequence

GCTTTTTTCGATTACTCATCGCTCATGGACTTTCTGTGGGTTATGCAGCTGGAAATCAAGTGCGAAGATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATCGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAATATCCGGAAGCCTTTGTATTCTGTTTTGGAATATATCACTTTGTAACAATTTATCAACTATTTGTCAGAGAAGTATGGGCTCTCAAATGGAATTTGTGCCTTCGAGAAATCATGTAGCTTCAACTTGTTCAGCATTCCAAAGTCTTTGGCAACATTCATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGCAGGGGTATTGCTACGACAAGTTCAATGGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAACACATAATGCAGATTTTAGATAAGGAAGCTATTGGGGAAGTAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTATCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTCCCTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCAC

Coding sequence (CDS)

ATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTAAATCGGGATGCTGGCTGTAGCTGCTCGGCGCCAAGGTCGATGGAATGTAGTTTTGGGAATCCGTATGCGTCTTTGAGTGGGCAATCAATATCCGGAAGCCTTTGTATTCTGTTTTGGAATATATCACTTTGTAACAATTTATCAACTATTTGTCAGAGAAGTATGGGCTCTCAAATGGAATTTGTGCCTTCGAGAAATCATGTAGCTTCAACTTGTTCAGCATTCCAAAGTCTTTGGCAACATTCATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGCAGGGGTATTGCTACGACAAGTTCAATGGAATCGGCTCCACAAGGATCTCCCGCAGTTGATTCTGATATAACTCCTCGCATCAAATTTAAGCGGCTTGATAAAACCTCAAAACACATAATGCAGATTTTAGATAAGGAAGCTATTGGGGAAGTAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTATCTCAACGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTCCCTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCAC

Protein sequence

MQGFRRINQLVRRQSPDAHFKLIRGYPLNRDAGCSCSAPRSMECSFGNPYASLSGQSISGSLCILFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPFSSSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLPYLRDKMNALKKH

Homology

[Close]

BLAST of Cp4.1LG20g07290 vs. ExPASy Swiss-Prot
Match: P82413 (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 PE=1 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-29
Identity = 71/137 (51.82%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 133 ESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVKAQREIPDIKPGYIVQLK 192
           E  P  S A   +  PR +  +L      IM IL+K+A+   +  R +P I+ G IVQ++
Sbjct: 97  EELPVESEAEAEERPPRQQRVKLG----DIMGILNKKAVHAAEELRPVPGIRTGDIVQIR 156

Query: 193 VEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKK 252
           +EVPENKRR+S  KGIVI+R+NAG++TT R+RR++AGVG+E +FPLYSPNIKEI V+  +
Sbjct: 157 LEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHR 216

Query: 253 KVRRAKLPYLRDKMNAL 270
           KVR+A+L YLRDK+  L
Sbjct: 217 KVRKARLYYLRDKLPRL 229

[Close]

BLAST of Cp4.1LG20g07290 vs. ExPASy Swiss-Prot
Match: Q8W463 (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.1e-29
Identity = 61/108 (56.48%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 162 IMQILDKEAIGEVKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTF 221
           +M IL+++AI   +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 114 VMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 173

Query: 222 RLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLPYLRDKMNAL 270
           R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+L YLRDK+  L
Sbjct: 174 RIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 221

[Close]

BLAST of Cp4.1LG20g07290 vs. ExPASy Swiss-Prot
Match: Q8RXX5 (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.0e-29
Identity = 61/108 (56.48%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 162 IMQILDKEAIGEVKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTF 221
           IM +L+K+AI   +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 177

Query: 222 RLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLPYLRDKMNAL 270
           R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+L YLRDK+  L
Sbjct: 178 RIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 225

[Close]

BLAST of Cp4.1LG20g07290 vs. ExPASy Swiss-Prot
Match: A5G0G7 (50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplS PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-18
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 161 HIMQILDKEAIGEVKAQREIPDIKPGYIVQLKVEVPENKR-RISTLKGIVIARRNAGLNT 220
           +++Q +D E IG++   R +PD KPG  +++ V V E +R RI   +G+ IAR N G+N+
Sbjct: 2   NVIQTIDAEQIGKLAEARAVPDFKPGDNLRVSVRVTEGERTRIQAFEGVCIARSNRGINS 61

Query: 221 TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLPYLRDK 266
            F +R++  G G+E +FPLYSPN+ EI V  +  VRRAKL YLR +
Sbjct: 62  NFTVRKISYGEGVERVFPLYSPNVTEIAVTRRGVVRRAKLYYLRGR 107

[Close]

BLAST of Cp4.1LG20g07290 vs. ExPASy Swiss-Prot
Match: Q2G8H1 (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplS PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.7e-18
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 161 HIMQILDKEAIGEVKAQREIPDIKPGYIVQLKVEVPENKR-RISTLKGIVIARRNAGLNT 220
           +++Q L+ EAI E KA++EIPD + G  V++ V V E +R R+   +G+ IAR N GL +
Sbjct: 2   NLIQQLEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGS 61

Query: 221 TFRLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLPYLRDK 266
            F +R++  G G+E +FPLYSPNI  I V+ +  VRRAKL YLR +
Sbjct: 62  NFTVRKISFGEGVERVFPLYSPNIDSITVVRRGVVRRAKLYYLRGR 107

[Close]

BLAST of Cp4.1LG20g07290 vs. NCBI nr
Match: XP_022970336.1 (50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_022970337.1 50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 417 bits (1071), Expect = 6.00e-145
Identity = 227/272 (83.46%), Postives = 234/272 (86.03%), Query Frame = 0


Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNRDAGCSCSAPRSMECSFGNPYASLSGQSISG 60
           MQGFRRINQLVRRQSPD HFKLIRGYPLN DAGCSCSAP SMECSFGNPY SLSG     
Sbjct: 1   MQGFRRINQLVRRQSPDVHFKLIRGYPLNGDAGCSCSAPMSMECSFGNPYGSLSGS---- 60

Query: 61  SLCILFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPF 120
               L  + S   N      RSMGSQMEFVPS NH++S+CSAFQSL  HS+QLAEIAAPF
Sbjct: 61  ----LLRSFSRLGNQYPEAFRSMGSQMEFVPSGNHISSSCSAFQSLRPHSYQLAEIAAPF 120

Query: 121 SSSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVKAQREI 180
           SS RGIA TSS ES+PQGSP VDSDIT RIKFK LDKTSKHIMQILDKEA GEVKAQREI
Sbjct: 121 SS-RGIAMTSSTESSPQGSPTVDSDIT-RIKFKWLDKTSKHIMQILDKEAFGEVKAQREI 180

Query: 181 PDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYS 240
           PDIK GYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYS
Sbjct: 181 PDIKSGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYS 240

Query: 241 PNIKEIMVLDKKKVRRAKLPYLRDKMNALKKH 272
           PNIKEI VLDKKKVRRAKL YLRDKMNALKKH
Sbjct: 241 PNIKEIKVLDKKKVRRAKLYYLRDKMNALKKH 262

[Close]

BLAST of Cp4.1LG20g07290 vs. NCBI nr
Match: XP_023522393.1 (50S ribosomal protein L19, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404 bits (1038), Expect = 2.42e-140
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 65  LFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPFSSSR 124
           LFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPFSSSR
Sbjct: 28  LFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPFSSSR 87

Query: 125 GIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVKAQREIPDIK 184
           GIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVKAQREIPDIK
Sbjct: 88  GIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVKAQREIPDIK 147

Query: 185 PGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIK 244
           PGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIK
Sbjct: 148 PGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIK 207

Query: 245 EIMVLDKKKVRRAKLPYLRDKMNALKKH 272
           EIMVLDKKKVRRAKLPYLRDKMNALKKH
Sbjct: 208 EIMVLDKKKVRRAKLPYLRDKMNALKKH 235

[Close]

BLAST of Cp4.1LG20g07290 vs. NCBI nr
Match: XP_038896029.1 (uncharacterized protein LOC120084206 [Benincasa hispida])

HSP 1 Score: 399 bits (1025), Expect = 7.76e-138
Identity = 220/277 (79.42%), Postives = 228/277 (82.31%), Query Frame = 0


Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNRDAGCSCSAPRSME------CSFGNPYASLS 60
           MQGFRRINQLVRRQSPDAHFKLIRGYPLN +AGCSCS P  ME      C FGN Y S S
Sbjct: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGNAGCSCSTPMLMENSSAISCLFGNSYVSFS 60

Query: 61  GQSISGSLCILFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLA 120
           G         L  + S   N      ++M SQMEFVPSR HV+S CSAF S   H FQLA
Sbjct: 61  GS--------LLRSFSRLGNQDPEAFKNMSSQMEFVPSRKHVSSVCSAFPSSRPHLFQLA 120

Query: 121 EIAAPFSSSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEV 180
           EI APFSS RGIATTSSMESA QGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEA+ EV
Sbjct: 121 EIVAPFSS-RGIATTSSMESALQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAVEEV 180

Query: 181 KAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIES 240
           KAQREIPDI+PGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRRLVAGVGIES
Sbjct: 181 KAQREIPDIRPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIES 240

Query: 241 LFPLYSPNIKEIMVLDKKKVRRAKLPYLRDKMNALKK 271
           LFPLYSPNIKEI VLDKKKVRRAKL YLRDKMNALKK
Sbjct: 241 LFPLYSPNIKEIKVLDKKKVRRAKLYYLRDKMNALKK 268

[Close]

BLAST of Cp4.1LG20g07290 vs. NCBI nr
Match: KAG6583579.1 (50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396 bits (1018), Expect = 2.50e-137
Identity = 221/273 (80.95%), Postives = 225/273 (82.42%), Query Frame = 0


Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNRDAGCSCSAPRSMECSFGNPYASLSGQSISG 60
           MQGFRRINQLVRRQSPDAHFKLIRGYPLN DAGCSCSAPRSMECSFGNPYASLSGQS SG
Sbjct: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSG 60

Query: 61  SLCILFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPF 120
           SL                                       +FQSL  HS+QLAEIAAPF
Sbjct: 61  SL---------------------------------------SFQSLRPHSYQLAEIAAPF 120

Query: 121 SSSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVK-AQRE 180
           S  RGIATTSS ESAPQGSPAVDSDITPRIKFKRLDKTSK+IMQILDKEAIGEVK AQRE
Sbjct: 121 SR-RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQRE 180

Query: 181 IPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLY 240
           IPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLY
Sbjct: 181 IPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLY 233

Query: 241 SPNIKEIMVLDKKKVRRAKLPYLRDKMNALKKH 272
           SPNIKEIMVLDKKKVRRAKL YLRDKMNALKKH
Sbjct: 241 SPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH 233

[Close]

BLAST of Cp4.1LG20g07290 vs. NCBI nr
Match: KAG7019281.1 (50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396 bits (1018), Expect = 4.13e-137
Identity = 221/273 (80.95%), Postives = 225/273 (82.42%), Query Frame = 0


Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNRDAGCSCSAPRSMECSFGNPYASLSGQSISG 60
           MQGFRRINQLVRRQSPDAHFKLIRGYPLN DAGCSCSAPRSMECSFGNPYASLSGQS SG
Sbjct: 15  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPRSMECSFGNPYASLSGQSKSG 74

Query: 61  SLCILFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPF 120
           SL                                       +FQSL  HS+QLAEIAAPF
Sbjct: 75  SL---------------------------------------SFQSLRPHSYQLAEIAAPF 134

Query: 121 SSSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVK-AQRE 180
           S  RGIATTSS ESAPQGSPAVDSDITPRIKFKRLDKTSK+IMQILDKEAIGEVK AQRE
Sbjct: 135 SR-RGIATTSSTESAPQGSPAVDSDITPRIKFKRLDKTSKYIMQILDKEAIGEVKKAQRE 194

Query: 181 IPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLY 240
           IPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLY
Sbjct: 195 IPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLY 247

Query: 241 SPNIKEIMVLDKKKVRRAKLPYLRDKMNALKKH 272
           SPNIKEIMVLDKKKVRRAKL YLRDKMNALKKH
Sbjct: 255 SPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH 247

[Close]

BLAST of Cp4.1LG20g07290 vs. ExPASy TrEMBL
Match: A0A6J1I0B3 (50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469331 PE=3 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 2.90e-145
Identity = 227/272 (83.46%), Postives = 234/272 (86.03%), Query Frame = 0


Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNRDAGCSCSAPRSMECSFGNPYASLSGQSISG 60
           MQGFRRINQLVRRQSPD HFKLIRGYPLN DAGCSCSAP SMECSFGNPY SLSG     
Sbjct: 1   MQGFRRINQLVRRQSPDVHFKLIRGYPLNGDAGCSCSAPMSMECSFGNPYGSLSGS---- 60

Query: 61  SLCILFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPF 120
               L  + S   N      RSMGSQMEFVPS NH++S+CSAFQSL  HS+QLAEIAAPF
Sbjct: 61  ----LLRSFSRLGNQYPEAFRSMGSQMEFVPSGNHISSSCSAFQSLRPHSYQLAEIAAPF 120

Query: 121 SSSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVKAQREI 180
           SS RGIA TSS ES+PQGSP VDSDIT RIKFK LDKTSKHIMQILDKEA GEVKAQREI
Sbjct: 121 SS-RGIAMTSSTESSPQGSPTVDSDIT-RIKFKWLDKTSKHIMQILDKEAFGEVKAQREI 180

Query: 181 PDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYS 240
           PDIK GYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYS
Sbjct: 181 PDIKSGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYS 240

Query: 241 PNIKEIMVLDKKKVRRAKLPYLRDKMNALKKH 272
           PNIKEI VLDKKKVRRAKL YLRDKMNALKKH
Sbjct: 241 PNIKEIKVLDKKKVRRAKLYYLRDKMNALKKH 262

[Close]

BLAST of Cp4.1LG20g07290 vs. ExPASy TrEMBL
Match: A0A6J1GVN3 (54S ribosomal protein subunit img1, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457281 PE=3 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 8.68e-135
Identity = 217/279 (77.78%), Postives = 230/279 (82.44%), Query Frame = 0


Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNRDAGCSCSAPRSMECSF------GNPYASLS 60
           MQ FRRINQLVRRQSPDAHFK IRGYPLN DA C CSA  SME SF      GNPY SL+
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 61  GQSISGSLCILFWNIS-LCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQL 120
           G         LF + S L N      Q+ MGSQMEF+PS   V+STC AFQS  +H FQL
Sbjct: 61  GS--------LFRSFSKLGNQYPEAFQKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQL 120

Query: 121 AEIAAPFSSSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGE 180
           AEIAAPFSS RGIATTSSMESAPQGS  +D+DITPRIKFKRLDKTSKHIMQILDKEA+ E
Sbjct: 121 AEIAAPFSS-RGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEE 180

Query: 181 VKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIE 240
           VKA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRR+VAGVGIE
Sbjct: 181 VKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIE 240

Query: 241 SLFPLYSPNIKEIMVLDKKKVRRAKLPYLRDKMNALKKH 272
           SLFPLYSPNIKEI VLDKKKVRRAKL YLRDKM +LKKH
Sbjct: 241 SLFPLYSPNIKEITVLDKKKVRRAKLYYLRDKMKSLKKH 270

[Close]

BLAST of Cp4.1LG20g07290 vs. ExPASy TrEMBL
Match: A0A6J1GUP7 (54S ribosomal protein subunit img1, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457281 PE=3 SV=1)

HSP 1 Score: 390 bits (1001), Expect = 1.69e-134
Identity = 215/278 (77.34%), Postives = 228/278 (82.01%), Query Frame = 0


Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNRDAGCSCSAPRSMECSF------GNPYASLS 60
           MQ FRRINQLVRRQSPDAHFK IRGYPLN DA C CSA  SME SF      GNPY SL+
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 61  GQSISGSLCILFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLA 120
           G         LF + S   N      + MGSQMEF+PS   V+STC AFQS  +H FQLA
Sbjct: 61  GS--------LFRSFSKLGNQYPEAFKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLA 120

Query: 121 EIAAPFSSSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEV 180
           EIAAPFSS RGIATTSSMESAPQGS  +D+DITPRIKFKRLDKTSKHIMQILDKEA+ EV
Sbjct: 121 EIAAPFSS-RGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEV 180

Query: 181 KAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIES 240
           KA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRR+VAGVGIES
Sbjct: 181 KAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIES 240

Query: 241 LFPLYSPNIKEIMVLDKKKVRRAKLPYLRDKMNALKKH 272
           LFPLYSPNIKEI VLDKKKVRRAKL YLRDKM +LKKH
Sbjct: 241 LFPLYSPNIKEITVLDKKKVRRAKLYYLRDKMKSLKKH 269

[Close]

BLAST of Cp4.1LG20g07290 vs. ExPASy TrEMBL
Match: A0A6J1K3G4 (50S ribosomal protein L19, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490302 PE=3 SV=1)

HSP 1 Score: 382 bits (981), Expect = 1.93e-131
Identity = 216/279 (77.42%), Postives = 227/279 (81.36%), Query Frame = 0


Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNRDAGCSCSAPRSMECS------FGNPYASLS 60
           MQ F RINQLVRRQS  AHFK IRGYPLN DA   CSA  SME S      F NPY SL+
Sbjct: 1   MQNFPRINQLVRRQSSYAHFKPIRGYPLNGDASSCCSASMSMENSLTSLRLFANPYGSLN 60

Query: 61  GQSISGSLCILFWNIS-LCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQL 120
           G         LF + S L N      Q+ MGSQMEF+PS   V+S C AFQS  +H FQL
Sbjct: 61  GS--------LFRSFSKLGNQYPEAFQKDMGSQMEFLPSGKRVSSACPAFQSPRKHLFQL 120

Query: 121 AEIAAPFSSSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGE 180
           AEIAAPFSS RGIATTSSMESAPQGSPA+DSDITPRIKFKRLDKTSKHIMQILDKEAI E
Sbjct: 121 AEIAAPFSS-RGIATTSSMESAPQGSPAIDSDITPRIKFKRLDKTSKHIMQILDKEAIEE 180

Query: 181 VKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIE 240
           VKA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRR+VAGVGIE
Sbjct: 181 VKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIE 240

Query: 241 SLFPLYSPNIKEIMVLDKKKVRRAKLPYLRDKMNALKKH 272
           SLFPLYSPNIKEI VLDKKKVRRAKL YLRDKMNALK+H
Sbjct: 241 SLFPLYSPNIKEITVLDKKKVRRAKLYYLRDKMNALKRH 270

[Close]

BLAST of Cp4.1LG20g07290 vs. ExPASy TrEMBL
Match: A0A6J1K1Y5 (50S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490302 PE=3 SV=1)

HSP 1 Score: 381 bits (979), Expect = 3.76e-131
Identity = 214/278 (76.98%), Postives = 225/278 (80.94%), Query Frame = 0


Query: 1   MQGFRRINQLVRRQSPDAHFKLIRGYPLNRDAGCSCSAPRSMECS------FGNPYASLS 60
           MQ F RINQLVRRQS  AHFK IRGYPLN DA   CSA  SME S      F NPY SL+
Sbjct: 1   MQNFPRINQLVRRQSSYAHFKPIRGYPLNGDASSCCSASMSMENSLTSLRLFANPYGSLN 60

Query: 61  GQSISGSLCILFWNISLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLA 120
           G         LF + S   N      + MGSQMEF+PS   V+S C AFQS  +H FQLA
Sbjct: 61  GS--------LFRSFSKLGNQYPEAFKDMGSQMEFLPSGKRVSSACPAFQSPRKHLFQLA 120

Query: 121 EIAAPFSSSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEV 180
           EIAAPFSS RGIATTSSMESAPQGSPA+DSDITPRIKFKRLDKTSKHIMQILDKEAI EV
Sbjct: 121 EIAAPFSS-RGIATTSSMESAPQGSPAIDSDITPRIKFKRLDKTSKHIMQILDKEAIEEV 180

Query: 181 KAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIES 240
           KA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRR+VAGVGIES
Sbjct: 181 KAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIES 240

Query: 241 LFPLYSPNIKEIMVLDKKKVRRAKLPYLRDKMNALKKH 272
           LFPLYSPNIKEI VLDKKKVRRAKL YLRDKMNALK+H
Sbjct: 241 LFPLYSPNIKEITVLDKKKVRRAKLYYLRDKMNALKRH 269

[Close]

BLAST of Cp4.1LG20g07290 vs. TAIR 10
Match: AT5G11750.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 221.5 bits (563), Expect = 8.4e-58
Identity = 111/145 (76.55%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 128 TTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVKAQREIPDIKPGY 187
           T  S++S PQGSP  D  +  RIKFKRLDKT+KHIMQI+DKEA+ EV+  REIP+IKPGY
Sbjct: 85  TGDSVQSTPQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEVRNLREIPEIKPGY 144

Query: 188 IVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIM 247
           IVQLKVEVPENKRR+S +KG+VIARRNAGLN+TFR+RRLVAGVG+ES+FPLYSPN++EI 
Sbjct: 145 IVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLREIK 204

Query: 248 VLDKKKVRRAKLPYLRDKMNALKKH 273
           V+DKKKVRRAKL YLRDK+NALKKH
Sbjct: 205 VVDKKKVRRAKLYYLRDKVNALKKH 229

[Close]

BLAST of Cp4.1LG20g07290 vs. TAIR 10
Match: AT4G11630.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 218.0 bits (554), Expect = 9.3e-57
Identity = 112/151 (74.17%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 122 SSRGIATTSSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVKAQREIP 181
           +SR  +TT   +S+ QGSP  D  +  RIKFKRLDKT+KHIMQI+DKEA+ EV++ REIP
Sbjct: 77  ASRCFSTTG--DSSVQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEVRSLREIP 136

Query: 182 DIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSP 241
           +IKPGYIVQLKVEVPENKRR+S +KG+VIARRNAGLN+TFR+RRLVAGVG+ES+FPLYSP
Sbjct: 137 EIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSP 196

Query: 242 NIKEIMVLDKKKVRRAKLPYLRDKMNALKKH 273
           N++EI V+DKKKVRRAKL YLRDK+NALKKH
Sbjct: 197 NLREIKVVDKKKVRRAKLYYLRDKVNALKKH 225

[Close]

BLAST of Cp4.1LG20g07290 vs. TAIR 10
Match: AT1G24240.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-54
Identity = 121/203 (59.61%), Postives = 148/203 (72.91%), Query Frame = 0


Query: 70  SLCNNLSTICQRSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPFSSSRGIATT 129
           S C + S    R +G   +  PS        S+ ++    S  LA +     SSR  +TT
Sbjct: 27  SSCGSWSANESRKLG--FDSFPSTRAATYLISSLKNAGFSS--LAVVPKQNFSSRCFSTT 86

Query: 130 SSMESAPQGSPAVDSDITPRIKFKRLDKTSKHIMQILDKEAIGEVKAQREIPDIKPGYIV 189
                + QGSP  D  +  RIKFKRLDKT+KHIMQI+DKEA+ EV+  REIP+IKPGYIV
Sbjct: 87  G---DSVQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEVRTLREIPEIKPGYIV 146

Query: 190 QLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIMVL 249
           QLKVEVPENKRR+S +KG+VIARRNAGLN+TFR+RRLVAGVG+ES+FPLYSPN++ I V+
Sbjct: 147 QLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLRVIKVV 206

Query: 250 DKKKVRRAKLPYLRDKMNALKKH 273
           DKKKVRRAKL YLR+K+NALKKH
Sbjct: 207 DKKKVRRAKLYYLREKVNALKKH 222

[Close]

BLAST of Cp4.1LG20g07290 vs. TAIR 10
Match: AT4G17560.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 129.4 bits (324), Expect = 4.3e-30
Identity = 61/108 (56.48%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 162 IMQILDKEAIGEVKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTF 221
           +M IL+++AI   +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 114 VMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 173

Query: 222 RLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLPYLRDKMNAL 270
           R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+L YLRDK+  L
Sbjct: 174 RIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 221

[Close]

BLAST of Cp4.1LG20g07290 vs. TAIR 10
Match: AT5G47190.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 129.0 bits (323), Expect = 5.7e-30
Identity = 61/108 (56.48%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 162 IMQILDKEAIGEVKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTF 221
           IM +L+K+AI   +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 177

Query: 222 RLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLPYLRDKMNAL 270
           R+RR++AG+G+E +FP+YSPNIKEI V+  +KVRRA+L YLRDK+  L
Sbjct: 178 RIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 225

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g07290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82413	1.6e-29	51.82	50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 P...	[more]
Q8W463	6.1e-29	56.48	50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q8RXX5	8.0e-29	56.48	50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
A5G0G7	1.3e-18	45.28	50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]
Q2G8H1	3.7e-18	47.17	50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278...	[more]

BLAST of Cp4.1LG20g07290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970336.1	6.00e-145	83.46	50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima] >X...	[more]
XP_023522393.1	2.42e-140	100.00	50S ribosomal protein L19, chloroplastic-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_038896029.1	7.76e-138	79.42	uncharacterized protein LOC120084206 [Benincasa hispida]	[more]
KAG6583579.1	2.50e-137	80.95	50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
KAG7019281.1	4.13e-137	80.95	50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Cp4.1LG20g07290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I0B3	2.90e-145	83.46	50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1GVN3	8.68e-135	77.78	54S ribosomal protein subunit img1, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1GUP7	1.69e-134	77.34	54S ribosomal protein subunit img1, mitochondrial-like isoform X2 OS=Cucurbita m...	[more]
A0A6J1K3G4	1.93e-131	77.42	50S ribosomal protein L19, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A6J1K1Y5	3.76e-131	76.98	50S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=...	[more]

BLAST of Cp4.1LG20g07290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11750.1	8.4e-58	76.55	Ribosomal protein L19 family protein	[more]
AT4G11630.1	9.3e-57	74.17	Ribosomal protein L19 family protein	[more]
AT1G24240.1	1.5e-54	59.61	Ribosomal protein L19 family protein	[more]
AT4G17560.1	4.3e-30	56.48	Ribosomal protein L19 family protein	[more]
AT5G47190.1	5.7e-30	56.48	Ribosomal protein L19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PRINTS	PR00061	RIBOSOMALL19	coord: 167..196 score: 19.03 coord: 226..249 score: 39.24
IPR001857	Ribosomal protein L19	TIGRFAM	TIGR01024	TIGR01024	coord: 169..266 e-value: 1.0E-26 score: 91.2
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 173..266 e-value: 1.1E-28 score: 99.4
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 69..269
IPR038657	Ribosomal protein L19 superfamily	GENE3D	2.30.30.790		coord: 152..272 e-value: 6.6E-33 score: 115.2
None	No IPR available	PANTHER	PTHR15680:SF9	39S RIBOSOMAL PROTEIN L19, MITOCHONDRIAL	coord: 69..269
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 173..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g07290.1	Cp4.1LG20g07290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome