Cp4.1LG20g06870 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g06870
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionlate embryogenesis abundant protein, group 3-like
LocationCp4.1LG20: 5175953 .. 5177756 (-)
RNA-Seq ExpressionCp4.1LG20g06870
SyntenyCp4.1LG20g06870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGAAGACGGAGGATATGGCGAAGGAGGGGTCGAAGAAGGCGACGGAGACGGTGCAGAATATTGGGGAGAAGGCGAAGAGGACGGTGGAAGGGGCATGGGAGGCAGCGAAGGATACAACGCAAAAGATAAAGGAGAGGGTTGTAGGGTCAGATGAAGATGAGGGGGAAGAAGGGAGAGGGGGGAAGAAGTTGGATGATTGAAATAATGGGTGGAGTTCCTTAGAGTTGCATCAATGAAATTTCATGTTGTTTTAGGCTTTTGATCCAAAGATGTTCAATGTGTTTGTGGGAACTATGGAATAAGGTAGATATTTGAAGGAAATTTGTTTTGTTATCCTCTTTCTAAGTGTCTATGAATTTAAACACAAAGGAATTTATTTGGGGTATATACGTTGGGTCCAGATTTGTTGCTCTTTCGGCCAAGAGCTTTGATATGTGTTGTCCACTTCAAAGGGCAAGGTGAGATGAACCAGTATTTTTCTTTTCAATTTTTTCATGGTCTACTTCTTTCTTCTTTCTTTTTTTTTTAGTTTTTTATGGCTTTCTTTCTCTATCTTTTAGCTTTAATAATGGTGGCTCTAAATCATTTTGAACCCCATTTTCTTTGATTTGGCTTTGTGGGTGTTGGAATCTCCGTCGAAAATTTGTGTTTTGAGCTTAATTTGTGGAAGGGTTTTGATTGATAAGGCTTCTAGTGGGTGGAGTCTAAGTGGGTTGCTTCGATTTTGTGCCATGGTTGTGATTGAAGAGGGAAAATTGTAATGGAGGAGAGTGTCGGTTGAAAAGAGTCAAGGGATTGGTCACATTGTGCCTGAAAATGAGACGTTTGGCCATTTGATTGAAGAACATGGACGTGAGAGTAGCCGTGCTCTGATTTTCTTACATCAGAGACCACAAAGACCACAGGGCTTGAGGAGCACAGTCATAGCGGCTATGAGGACTCATCTTCCCCTTCTTCATTGAGTTGGTCCACTCGAAAAGCTGACGAACCCGATTGTATTAGACTTAATGTTGCTGATAAAGTAGAAAAAATTATGTTGTTAATAGGAAGCTGGGGAAGAAAGTATCTTCATCATCAGGTAATTTTAATCCTCTTTCCTTTATGGGGTTTCTCCATATAAATTGTATTAATATTTTAATGGTGTGTGGGGCTATAGAGATTGAGATGATGAAGGAAAGATTTTCTAAACTGCTGCTTCGAGAAGATATGTTAGGCTGCGGAAATGGGGTTCGTACGACATTGGCTATATCTAATGCCATTACAAATATTTGTGATATGCTTTGTCTCTTTTACACACCATTGTCTAATATTCTATCTAGGATGGGCATTGGTTACAGTGTCTAATGATTCTCTTCCCCATTGTTTTTGTTATAGCCACTCTGTTTAGGCAATTAGAACCTATTCCCCAACGGAAGAAAGTGCTCGGCTTCTTTGTGTTAGCAATCATTGATGCCTACTTGGCAGGCAAGCTTGAGGCACTGAATAAGGATAACTTCAAACAGGTTTTTTTATGGCAGTATGGGTTTTTGGAAAATAAACTTTTTGCAGGAAGTATTAGATAGTTTTGAAGTTTTCCTAAACCCTAAACTCTCCTCGCGTCGTTGAAGGAAGCTCTAAATTCGACCAAGGAGTTGCTTAGACTTGAGAGCAAGGGGAGCAAGGTTTGTCTGGTGCGTTTTCTCTACTTTTTGTGTGCTATCTGTTCAATTAGCGCGGTCTACCCTGCAATGTTGTGAATTGTTGAACAAGTTTGGGCAAAGATCTGGTCAAGTTTGGGGCTTGAAGGAGCTGCTTTGA

mRNA sequence

ATGAAGGAGAAGACGGAGGATATGGCGAAGGAGGGGTCGAAGAAGGCGACGGAGACGGTGCAGAATATTGGGGAGAAGGCGAAGAGGACGGTGGAAGGGGCATGGGAGGCAGCGAAGGATACAACGCAAAAGATAAAGGAGAGGGTTGTAGGATTTGTTGCTCTTTCGGCCAAGAGCTTTGATATGTGTTGTCCACTTCAAAGGGCAAGAAAAAATTATGTTGTTAATAGGAAGCTGGGGAAGAAAGTATCTTCATCATCAGCCACTCTGTTTAGGCAATTAGAACCTATTCCCCAACGGAAGAAAGTGCTCGGCTTCTTTGTGTTAGCAATCATTGATGCCTACTTGGCAGGCAAGCTTGAGGCACTGAATAAGGATAACTTCAAACAGGAAGCTCTAAATTCGACCAAGGAGTTGCTTAGACTTGAGAGCAAGGGGAGCAAGTTTGGGCAAAGATCTGGTCAAGTTTGGGGCTTGAAGGAGCTGCTTTGA

Coding sequence (CDS)

ATGAAGGAGAAGACGGAGGATATGGCGAAGGAGGGGTCGAAGAAGGCGACGGAGACGGTGCAGAATATTGGGGAGAAGGCGAAGAGGACGGTGGAAGGGGCATGGGAGGCAGCGAAGGATACAACGCAAAAGATAAAGGAGAGGGTTGTAGGATTTGTTGCTCTTTCGGCCAAGAGCTTTGATATGTGTTGTCCACTTCAAAGGGCAAGAAAAAATTATGTTGTTAATAGGAAGCTGGGGAAGAAAGTATCTTCATCATCAGCCACTCTGTTTAGGCAATTAGAACCTATTCCCCAACGGAAGAAAGTGCTCGGCTTCTTTGTGTTAGCAATCATTGATGCCTACTTGGCAGGCAAGCTTGAGGCACTGAATAAGGATAACTTCAAACAGGAAGCTCTAAATTCGACCAAGGAGTTGCTTAGACTTGAGAGCAAGGGGAGCAAGTTTGGGCAAAGATCTGGTCAAGTTTGGGGCTTGAAGGAGCTGCTTTGA

Protein sequence

MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVGFVALSAKSFDMCCPLQRARKNYVVNRKLGKKVSSSSATLFRQLEPIPQRKKVLGFFVLAIIDAYLAGKLEALNKDNFKQEALNSTKELLRLESKGSKFGQRSGQVWGLKELL
Homology
BLAST of Cp4.1LG20g06870 vs. NCBI nr
Match: KAG7015487.1 (Rop guanine nucleotide exchange factor 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148 bits (373), Expect = 3.96e-40
Identity = 121/314 (38.54%), Postives = 132/314 (42.04%), Query Frame = 0

Query: 1   MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG--------- 60
           MKEKTEDMAKEG+KKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG         
Sbjct: 1   MKEKTEDMAKEGTKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVGSDEDEGEEG 60

Query: 61  -----------------------------FVALSAKSFDMCCPLQRARKNYVVNRKL--- 120
                                        FVALS +SF MCCPLQRA  N   ++ L   
Sbjct: 61  RGGKVMDEDVADAFDPKMFNVLCGNCGIRFVALSTRSFAMCCPLQRASFNNGGSKSLVLE 120

Query: 121 -----------------------------------------------------------G 148
                                                                      G
Sbjct: 121 SPTKICVLSLICGTSQGIGHIGPENETFGHLIEEHRRESSSCSDFLTSETTGLEEHNHSG 180

BLAST of Cp4.1LG20g06870 vs. NCBI nr
Match: KAG6601678.1 (hypothetical protein SDJN03_06911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108 bits (270), Expect = 4.60e-27
Identity = 66/111 (59.46%), Postives = 68/111 (61.26%), Query Frame = 0

Query: 1   MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG--------- 60
           MKEKTEDMAKEG+KKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG         
Sbjct: 1   MKEKTEDMAKEGTKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVGSDEDERDED 60

Query: 61  --------------------------------FVALSAKSFDMCCPLQRAR 70
                                           FVALS +SF MCCPLQRAR
Sbjct: 61  ERDEDVVDVRRKSFDQLLIKRCSVLCGNCGIRFVALSTRSFAMCCPLQRAR 111

BLAST of Cp4.1LG20g06870 vs. NCBI nr
Match: XP_022954521.1 (late embryogenesis abundant protein, group 3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 94.4 bits (233), Expect = 2.19e-20
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1   MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 51
           MKEKTE+MAKEG+KKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG
Sbjct: 148 MKEKTEEMAKEGTKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 198

BLAST of Cp4.1LG20g06870 vs. NCBI nr
Match: KAG7012442.1 (hypothetical protein SDJN02_25194, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 2.43e-20
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1   MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 51
           MKEKTE+MAKEG+KKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG
Sbjct: 148 MKEKTEEMAKEGTKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 198

BLAST of Cp4.1LG20g06870 vs. NCBI nr
Match: KAG6573277.1 (hypothetical protein SDJN03_27164, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 2.43e-20
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1   MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 51
           MKEKTE+MAKEG+KKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG
Sbjct: 148 MKEKTEEMAKEGTKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 198

BLAST of Cp4.1LG20g06870 vs. ExPASy TrEMBL
Match: A0A6J1GR50 (late embryogenesis abundant protein, group 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456764 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.06e-20
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1   MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 51
           MKEKTE+MAKEG+KKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG
Sbjct: 148 MKEKTEEMAKEGTKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 198

BLAST of Cp4.1LG20g06870 vs. ExPASy TrEMBL
Match: A0A6J1K2X8 (late embryogenesis abundant protein, group 3-like OS=Cucurbita maxima OX=3661 GN=LOC111490179 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.88e-20
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1   MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 51
           MKEKTE+MAKEG+KKATETVQNIGEKAK+TVEGAWEAAKDTTQKIKERVVG
Sbjct: 148 MKEKTEEMAKEGTKKATETVQNIGEKAKKTVEGAWEAAKDTTQKIKERVVG 198

BLAST of Cp4.1LG20g06870 vs. ExPASy TrEMBL
Match: A0A5D3DRU4 (ABA-inducible protein PHV A1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00910 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.28e-17
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 0

Query: 1   MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 51
           MKEKTE+MAKEG+ KATETVQNIGEKAK+TV+GAWEAAKDTT K+KE+V+G
Sbjct: 152 MKEKTEEMAKEGTNKATETVQNIGEKAKQTVQGAWEAAKDTTNKMKEKVMG 202

BLAST of Cp4.1LG20g06870 vs. ExPASy TrEMBL
Match: A0A1S3B5V3 (ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.28e-17
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 0

Query: 1   MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 51
           MKEKTE+MAKEG+ KATETVQNIGEKAK+TV+GAWEAAKDTT K+KE+V+G
Sbjct: 152 MKEKTEEMAKEGTNKATETVQNIGEKAKQTVQGAWEAAKDTTNKMKEKVMG 202

BLAST of Cp4.1LG20g06870 vs. ExPASy TrEMBL
Match: A0A0A0LRY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.66e-15
Identity = 39/51 (76.47%), Postives = 49/51 (96.08%), Query Frame = 0

Query: 1   MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 51
           MK+KT++MAKEG+ KATET+QNIGEKAK+TV+GAWEAAKDTT K+KE+V+G
Sbjct: 164 MKDKTKEMAKEGTNKATETMQNIGEKAKQTVQGAWEAAKDTTNKVKEKVMG 214

BLAST of Cp4.1LG20g06870 vs. TAIR 10
Match: AT3G15280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 36 Blast hits to 36 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 8.4e-05
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 0

Query: 7   DMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 52
           D AKEG KKAT+   + G+  K  ++GAW+AAK+T Q I + V G
Sbjct: 61  DKAKEGVKKATDAAVSTGDNMKDAMDGAWKAAKETGQNISDAVTG 105

BLAST of Cp4.1LG20g06870 vs. TAIR 10
Match: AT4G13230.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 42.4 bits (98), Expect = 4.2e-04
Identity = 21/50 (42.00%), Postives = 32/50 (64.00%), Query Frame = 0

Query: 2  KEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVG 52
          ++K    A EG++  ++   N+ +KAK T E AW+  KDTT+KIK+ V G
Sbjct: 45 QQKVAKKADEGAQTISDAAGNLKDKAKNTAEEAWDKVKDTTEKIKDTVTG 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7015487.13.96e-4038.54Rop guanine nucleotide exchange factor 7, partial [Cucurbita argyrosperma subsp.... [more]
KAG6601678.14.60e-2759.46hypothetical protein SDJN03_06911, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022954521.12.19e-2096.08late embryogenesis abundant protein, group 3 isoform X1 [Cucurbita moschata][more]
KAG7012442.12.43e-2096.08hypothetical protein SDJN02_25194, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6573277.12.43e-2096.08hypothetical protein SDJN03_27164, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1GR501.06e-2096.08late embryogenesis abundant protein, group 3 isoform X1 OS=Cucurbita moschata OX... [more]
A0A6J1K2X82.88e-2094.12late embryogenesis abundant protein, group 3-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A5D3DRU49.28e-1782.35ABA-inducible protein PHV A1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3B5V39.28e-1782.35ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 S... [more]
A0A0A0LRY01.66e-1576.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G15280.18.4e-0548.89unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochond... [more]
AT4G13230.14.2e-0442.00Late embryogenesis abundant protein (LEA) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 125..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR47372:SF24OSJNBA0085I10.12 PROTEINcoord: 2..71
NoneNo IPR availablePANTHERPTHR47372DAUER UP-REGULATED-RELATEDcoord: 2..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g06870.1Cp4.1LG20g06870.1mRNA