Cp4.1LG20g06870 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGAGAAGACGGAGGATATGGCGAAGGAGGGGTCGAAGAAGGCGACGGAGACGGTGCAGAATATTGGGGAGAAGGCGAAGAGGACGGTGGAAGGGGCATGGGAGGCAGCGAAGGATACAACGCAAAAGATAAAGGAGAGGGTTGTAGGGTCAGATGAAGATGAGGGGGAAGAAGGGAGAGGGGGGAAGAAGTTGGATGATTGAAATAATGGGTGGAGTTCCTTAGAGTTGCATCAATGAAATTTCATGTTGTTTTAGGCTTTTGATCCAAAGATGTTCAATGTGTTTGTGGGAACTATGGAATAAGGTAGATATTTGAAGGAAATTTGTTTTGTTATCCTCTTTCTAAGTGTCTATGAATTTAAACACAAAGGAATTTATTTGGGGTATATACGTTGGGTCCAGATTTGTTGCTCTTTCGGCCAAGAGCTTTGATATGTGTTGTCCACTTCAAAGGGCAAGGTGAGATGAACCAGTATTTTTCTTTTCAATTTTTTCATGGTCTACTTCTTTCTTCTTTCTTTTTTTTTTAGTTTTTTATGGCTTTCTTTCTCTATCTTTTAGCTTTAATAATGGTGGCTCTAAATCATTTTGAACCCCATTTTCTTTGATTTGGCTTTGTGGGTGTTGGAATCTCCGTCGAAAATTTGTGTTTTGAGCTTAATTTGTGGAAGGGTTTTGATTGATAAGGCTTCTAGTGGGTGGAGTCTAAGTGGGTTGCTTCGATTTTGTGCCATGGTTGTGATTGAAGAGGGAAAATTGTAATGGAGGAGAGTGTCGGTTGAAAAGAGTCAAGGGATTGGTCACATTGTGCCTGAAAATGAGACGTTTGGCCATTTGATTGAAGAACATGGACGTGAGAGTAGCCGTGCTCTGATTTTCTTACATCAGAGACCACAAAGACCACAGGGCTTGAGGAGCACAGTCATAGCGGCTATGAGGACTCATCTTCCCCTTCTTCATTGAGTTGGTCCACTCGAAAAGCTGACGAACCCGATTGTATTAGACTTAATGTTGCTGATAAAGTAGAAAAAATTATGTTGTTAATAGGAAGCTGGGGAAGAAAGTATCTTCATCATCAGGTAATTTTAATCCTCTTTCCTTTATGGGGTTTCTCCATATAAATTGTATTAATATTTTAATGGTGTGTGGGGCTATAGAGATTGAGATGATGAAGGAAAGATTTTCTAAACTGCTGCTTCGAGAAGATATGTTAGGCTGCGGAAATGGGGTTCGTACGACATTGGCTATATCTAATGCCATTACAAATATTTGTGATATGCTTTGTCTCTTTTACACACCATTGTCTAATATTCTATCTAGGATGGGCATTGGTTACAGTGTCTAATGATTCTCTTCCCCATTGTTTTTGTTATAGCCACTCTGTTTAGGCAATTAGAACCTATTCCCCAACGGAAGAAAGTGCTCGGCTTCTTTGTGTTAGCAATCATTGATGCCTACTTGGCAGGCAAGCTTGAGGCACTGAATAAGGATAACTTCAAACAGGTTTTTTTATGGCAGTATGGGTTTTTGGAAAATAAACTTTTTGCAGGAAGTATTAGATAGTTTTGAAGTTTTCCTAAACCCTAAACTCTCCTCGCGTCGTTGAAGGAAGCTCTAAATTCGACCAAGGAGTTGCTTAGACTTGAGAGCAAGGGGAGCAAGGTTTGTCTGGTGCGTTTTCTCTACTTTTTGTGTGCTATCTGTTCAATTAGCGCGGTCTACCCTGCAATGTTGTGAATTGTTGAACAAGTTTGGGCAAAGATCTGGTCAAGTTTGGGGCTTGAAGGAGCTGCTTTGA ATGAAGGAGAAGACGGAGGATATGGCGAAGGAGGGGTCGAAGAAGGCGACGGAGACGGTGCAGAATATTGGGGAGAAGGCGAAGAGGACGGTGGAAGGGGCATGGGAGGCAGCGAAGGATACAACGCAAAAGATAAAGGAGAGGGTTGTAGGATTTGTTGCTCTTTCGGCCAAGAGCTTTGATATGTGTTGTCCACTTCAAAGGGCAAGAAAAAATTATGTTGTTAATAGGAAGCTGGGGAAGAAAGTATCTTCATCATCAGCCACTCTGTTTAGGCAATTAGAACCTATTCCCCAACGGAAGAAAGTGCTCGGCTTCTTTGTGTTAGCAATCATTGATGCCTACTTGGCAGGCAAGCTTGAGGCACTGAATAAGGATAACTTCAAACAGGAAGCTCTAAATTCGACCAAGGAGTTGCTTAGACTTGAGAGCAAGGGGAGCAAGTTTGGGCAAAGATCTGGTCAAGTTTGGGGCTTGAAGGAGCTGCTTTGA ATGAAGGAGAAGACGGAGGATATGGCGAAGGAGGGGTCGAAGAAGGCGACGGAGACGGTGCAGAATATTGGGGAGAAGGCGAAGAGGACGGTGGAAGGGGCATGGGAGGCAGCGAAGGATACAACGCAAAAGATAAAGGAGAGGGTTGTAGGATTTGTTGCTCTTTCGGCCAAGAGCTTTGATATGTGTTGTCCACTTCAAAGGGCAAGAAAAAATTATGTTGTTAATAGGAAGCTGGGGAAGAAAGTATCTTCATCATCAGCCACTCTGTTTAGGCAATTAGAACCTATTCCCCAACGGAAGAAAGTGCTCGGCTTCTTTGTGTTAGCAATCATTGATGCCTACTTGGCAGGCAAGCTTGAGGCACTGAATAAGGATAACTTCAAACAGGAAGCTCTAAATTCGACCAAGGAGTTGCTTAGACTTGAGAGCAAGGGGAGCAAGTTTGGGCAAAGATCTGGTCAAGTTTGGGGCTTGAAGGAGCTGCTTTGA MKEKTEDMAKEGSKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVGFVALSAKSFDMCCPLQRARKNYVVNRKLGKKVSSSSATLFRQLEPIPQRKKVLGFFVLAIIDAYLAGKLEALNKDNFKQEALNSTKELLRLESKGSKFGQRSGQVWGLKELL Homology
BLAST of Cp4.1LG20g06870 vs. NCBI nr
Match: KAG7015487.1 (Rop guanine nucleotide exchange factor 7, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 148 bits (373), Expect = 3.96e-40 Identity = 121/314 (38.54%), Postives = 132/314 (42.04%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. NCBI nr
Match: KAG6601678.1 (hypothetical protein SDJN03_06911, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 108 bits (270), Expect = 4.60e-27 Identity = 66/111 (59.46%), Postives = 68/111 (61.26%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. NCBI nr
Match: XP_022954521.1 (late embryogenesis abundant protein, group 3 isoform X1 [Cucurbita moschata]) HSP 1 Score: 94.4 bits (233), Expect = 2.19e-20 Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. NCBI nr
Match: KAG7012442.1 (hypothetical protein SDJN02_25194, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 94.4 bits (233), Expect = 2.43e-20 Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. NCBI nr
Match: KAG6573277.1 (hypothetical protein SDJN03_27164, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 94.4 bits (233), Expect = 2.43e-20 Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. ExPASy TrEMBL
Match: A0A6J1GR50 (late embryogenesis abundant protein, group 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456764 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.06e-20 Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. ExPASy TrEMBL
Match: A0A6J1K2X8 (late embryogenesis abundant protein, group 3-like OS=Cucurbita maxima OX=3661 GN=LOC111490179 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.88e-20 Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. ExPASy TrEMBL
Match: A0A5D3DRU4 (ABA-inducible protein PHV A1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00910 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 9.28e-17 Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. ExPASy TrEMBL
Match: A0A1S3B5V3 (ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 9.28e-17 Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. ExPASy TrEMBL
Match: A0A0A0LRY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.66e-15 Identity = 39/51 (76.47%), Postives = 49/51 (96.08%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. TAIR 10
Match: AT3G15280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 36 Blast hits to 36 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 44.7 bits (104), Expect = 8.4e-05 Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 0
BLAST of Cp4.1LG20g06870 vs. TAIR 10
Match: AT4G13230.1 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 42.4 bits (98), Expect = 4.2e-04 Identity = 21/50 (42.00%), Postives = 32/50 (64.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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