Cp4.1LG20g06860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g06860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionMitotic spindle checkpoint protein MAD2
LocationCp4.1LG20: 5128972 .. 5129184 (+)
RNA-Seq ExpressionCp4.1LG20g06860
SyntenyCp4.1LG20g06860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTAGATGGTGGTCTGTCATGGGCAGATCAATGGGATTCCAACCCTGACCCAGGCCCTCCACCGTCGTCGGCAGAAAACGGGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGGAGGGGGGATCCTCCTCGTCAGAGAAGAGCATATTTAAGAAGGCAAGCTTGAAGTGGATAAAGGAATTGCGAAAGAAATCTGAGAAATCTTGA

mRNA sequence

ATGGGTTTAGATGGTGGTCTGTCATGGGCAGATCAATGGGATTCCAACCCTGACCCAGGCCCTCCACCGTCGTCGGCAGAAAACGGGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGGAGGGGGGATCCTCCTCGTCAGAGAAGAGCATATTTAAGAAGGCAAGCTTGAAGTGGATAAAGGAATTGCGAAAGAAATCTGAGAAATCTTGA

Coding sequence (CDS)

ATGGGTTTAGATGGTGGTCTGTCATGGGCAGATCAATGGGATTCCAACCCTGACCCAGGCCCTCCACCGTCGTCGGCAGAAAACGGGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGGAGGGGGGATCCTCCTCGTCAGAGAAGAGCATATTTAAGAAGGCAAGCTTGAAGTGGATAAAGGAATTGCGAAAGAAATCTGAGAAATCTTGA

Protein sequence

MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWIKELRKKSEKS
Homology
BLAST of Cp4.1LG20g06860 vs. NCBI nr
Match: XP_022932206.1 (uncharacterized protein LOC111438527 [Cucurbita moschata] >XP_023519855.1 uncharacterized protein LOC111783185 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127 bits (320), Expect = 8.20e-37
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60
          MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI
Sbjct: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60

Query: 61 KELRKKSEKS 70
          KELRKKSEKS
Sbjct: 61 KELRKKSEKS 70

BLAST of Cp4.1LG20g06860 vs. NCBI nr
Match: KAG6583660.1 (hypothetical protein SDJN03_19592, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032466.1 hypothetical protein SDJN02_06514, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121 bits (304), Expect = 2.40e-34
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0

Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKK--EKEEGGSSSSEKSIFKKASLK 60
          MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKK  EKE+GGSSSSEKSIFKKASLK
Sbjct: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKKKEKEDGGSSSSEKSIFKKASLK 60

Query: 61 WIKELRKKSEKS 70
          WIKELRKKSEKS
Sbjct: 61 WIKELRKKSEKS 72

BLAST of Cp4.1LG20g06860 vs. NCBI nr
Match: XP_022970362.1 (uncharacterized protein LOC111469348 [Cucurbita maxima])

HSP 1 Score: 117 bits (292), Expect = 1.42e-32
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 0

Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60
          MGLDGGLSWADQWDSNPDPGPPPSS ENGKKKKKKK   EEGGSSSSEKSIFKKASLKWI
Sbjct: 1  MGLDGGLSWADQWDSNPDPGPPPSSTENGKKKKKKK---EEGGSSSSEKSIFKKASLKWI 60

Query: 61 KELRKKSEKS 70
          KELRKKSEKS
Sbjct: 61 KELRKKSEKS 67

BLAST of Cp4.1LG20g06860 vs. NCBI nr
Match: KAG7012753.1 (Mitotic spindle checkpoint protein MAD2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (256), Expect = 8.55e-25
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 4   DGGLSWADQWDSNPDPGPPPSSAENGKKK---KKKKKEKEEGGSSSS-EKSIFKKASLKW 63
           D GLSWADQWD+NPDP PPPSSAENGKKK   KKKKKEKEEGGSSSS EK+IFKKA+LKW
Sbjct: 206 DDGLSWADQWDNNPDPNPPPSSAENGKKKNIFKKKKKEKEEGGSSSSSEKNIFKKANLKW 265

Query: 64  IKELRKKSEKS 70
           IKELRKKSEKS
Sbjct: 266 IKELRKKSEKS 276

BLAST of Cp4.1LG20g06860 vs. NCBI nr
Match: XP_038892905.1 (uncharacterized protein LOC120081808 [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 7.19e-14
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASL--K 60
          MGLDGGLSWADQWD+NPDP PP SS+EN KKK K           SSEK  F+K  L  K
Sbjct: 1  MGLDGGLSWADQWDNNPDP-PPSSSSENEKKKNK---------DGSSEKGKFRKTILGFK 60

Query: 61 WIKELRKKSEKS 70
          W+KELRKKS+KS
Sbjct: 61 WMKELRKKSDKS 62

BLAST of Cp4.1LG20g06860 vs. ExPASy TrEMBL
Match: A0A6J1EVQ9 (uncharacterized protein LOC111438527 OS=Cucurbita moschata OX=3662 GN=LOC111438527 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 3.97e-37
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60
          MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI
Sbjct: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60

Query: 61 KELRKKSEKS 70
          KELRKKSEKS
Sbjct: 61 KELRKKSEKS 70

BLAST of Cp4.1LG20g06860 vs. ExPASy TrEMBL
Match: A0A6J1HYV9 (uncharacterized protein LOC111469348 OS=Cucurbita maxima OX=3661 GN=LOC111469348 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 6.87e-33
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 0

Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60
          MGLDGGLSWADQWDSNPDPGPPPSS ENGKKKKKKK   EEGGSSSSEKSIFKKASLKWI
Sbjct: 1  MGLDGGLSWADQWDSNPDPGPPPSSTENGKKKKKKK---EEGGSSSSEKSIFKKASLKWI 60

Query: 61 KELRKKSEKS 70
          KELRKKSEKS
Sbjct: 61 KELRKKSEKS 67

BLAST of Cp4.1LG20g06860 vs. ExPASy TrEMBL
Match: A0A0A0KVC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G590180 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.82e-14
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASL--K 60
          MGLDGGLSWADQWD NPDP  PPSS+EN KKK K           SS+KS F+K  L  K
Sbjct: 1  MGLDGGLSWADQWDYNPDP--PPSSSENEKKKNK---------DGSSDKSKFRKTILGFK 60

Query: 61 WIKELRKKSEKS 70
          W+KELRKKS+KS
Sbjct: 61 WMKELRKKSDKS 61

BLAST of Cp4.1LG20g06860 vs. ExPASy TrEMBL
Match: A0A1S3BE81 (uncharacterized protein LOC103488917 OS=Cucumis melo OX=3656 GN=LOC103488917 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.79e-13
Identity = 44/72 (61.11%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASL--K 60
          MGLDGGLSWADQWD NPDP  PPSS++N KKK K           SS+KS F+K  L  K
Sbjct: 1  MGLDGGLSWADQWDYNPDP--PPSSSDNDKKKNK---------DGSSDKSKFRKTILGFK 60

Query: 61 WIKELRKKSEKS 70
          W+K+LRKKS+KS
Sbjct: 61 WMKDLRKKSDKS 61

BLAST of Cp4.1LG20g06860 vs. ExPASy TrEMBL
Match: A0A6P4PMA4 (uncharacterized protein LOC108479077 OS=Gossypium arboreum OX=29729 GN=LOC108479077 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.69e-10
Identity = 44/68 (64.71%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 3  LDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKA--SLKWI 62
          +D GLSWADQWD+NPDP P    AE  KKKKKKKKE  EG    S KS F K+  S KWI
Sbjct: 1  MDSGLSWADQWDTNPDPSP----AEPDKKKKKKKKE--EG----STKSKFSKSVLSFKWI 58

Query: 63 KELRKKSE 68
          KELRKK+E
Sbjct: 61 KELRKKAE 58

BLAST of Cp4.1LG20g06860 vs. TAIR 10
Match: AT1G67670.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24405.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 5.4e-09
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 3  LDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWIKE 62
          +D G SWADQWD N +P P PSS +  + KKK KK+KEE GS SS          KW+KE
Sbjct: 1  MDSGPSWADQWDYN-NPDPLPSSTKEDESKKKNKKKKEEDGSKSSLGKTL--LGFKWMKE 60

Query: 63 LRKKSEK 70
          LRKKSEK
Sbjct: 61 LRKKSEK 64

BLAST of Cp4.1LG20g06860 vs. TAIR 10
Match: AT1G24405.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 3  LDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWIKE 62
          +D GLSWADQWD N D  PPP+S+    KKKKKKK+KE+G  S   K+I      KW+K 
Sbjct: 1  MDSGLSWADQWDYNSD--PPPNSSNEDDKKKKKKKKKEDGSKSGIGKAIL---GFKWMK- 60

Query: 63 LRKKSEK 70
          L KKS+K
Sbjct: 61 LGKKSDK 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022932206.18.20e-37100.00uncharacterized protein LOC111438527 [Cucurbita moschata] >XP_023519855.1 unchar... [more]
KAG6583660.12.40e-3495.83hypothetical protein SDJN03_19592, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022970362.11.42e-3294.29uncharacterized protein LOC111469348 [Cucurbita maxima][more]
KAG7012753.18.55e-2587.32Mitotic spindle checkpoint protein MAD2 [Cucurbita argyrosperma subsp. argyrospe... [more]
XP_038892905.17.19e-1463.89uncharacterized protein LOC120081808 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1EVQ93.97e-37100.00uncharacterized protein LOC111438527 OS=Cucurbita moschata OX=3662 GN=LOC1114385... [more]
A0A6J1HYV96.87e-3394.29uncharacterized protein LOC111469348 OS=Cucurbita maxima OX=3661 GN=LOC111469348... [more]
A0A0A0KVC14.82e-1463.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G590180 PE=4 SV=1[more]
A0A1S3BE812.79e-1361.11uncharacterized protein LOC103488917 OS=Cucumis melo OX=3656 GN=LOC103488917 PE=... [more]
A0A6P4PMA41.69e-1064.71uncharacterized protein LOC108479077 OS=Gossypium arboreum OX=29729 GN=LOC108479... [more]
Match NameE-valueIdentityDescription
AT1G67670.15.4e-0956.72unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G24405.12.1e-0855.22unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availablePANTHERPTHR33386:SF1F12A21.18-RELATEDcoord: 4..69
NoneNo IPR availablePANTHERPTHR33386OS02G0740600 PROTEINcoord: 4..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g06860.1Cp4.1LG20g06860.1mRNA