Cp4.1LG20g05250 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g05250
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein TIFY 5A-like
Location	Cp4.1LG20: 3054614 .. 3055051 (-)
RNA-Seq Expression	Cp4.1LG20g05250
Synteny	Cp4.1LG20g05250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACATCCTCAACTGCAACTTGGAACTCTGTCTCTCTCCCCCTTCTTCCTCCCCTTCCACCGCCACCGCCACCGCCAATTCAACGTCGACATCTTGCCACAACCATATCGACCCTACTCGAGTCCCGATACCTGATCTTACAGAGCTCCAGGTATGTTTCTCTCGATGAAGTAGATATCTGTATTAATACGATGAATCCAATAGCTTTAGCTAATGAATTGTACGTGGTTGGGTATTGCAGGCAAGGGCAATAATCGTACGAGCGACAACACAAATGGAGGTCGAGAGAAGATTAACGACATGTCATATCAGTTCACCGAAGCAACGGGTGTCGATGAAGAGTGGGGCTAGCCCCTCCATGAGAAGATCGTTGCAAAGATTTCTTCAAAAGAGAAAGCATCGCATTCAAACACTTTCACCCTACTCTCACTAG

mRNA sequence

ATGGAAAACATCCTCAACTGCAACTTGGAACTCTGTCTCTCTCCCCCTTCTTCCTCCCCTTCCACCGCCACCGCCACCGCCAATTCAACGTCGACATCTTGCCACAACCATATCGACCCTACTCGAGTCCCGATACCTGATCTTACAGAGCTCCAGGCAAGGGCAATAATCGTACGAGCGACAACACAAATGGAGGTCGAGAGAAGATTAACGACATGTCATATCAGTTCACCGAAGCAACGGGTGTCGATGAAGAGTGGGGCTAGCCCCTCCATGAGAAGATCGTTGCAAAGATTTCTTCAAAAGAGAAAGCATCGCATTCAAACACTTTCACCCTACTCTCACTAG

Coding sequence (CDS)

ATGGAAAACATCCTCAACTGCAACTTGGAACTCTGTCTCTCTCCCCCTTCTTCCTCCCCTTCCACCGCCACCGCCACCGCCAATTCAACGTCGACATCTTGCCACAACCATATCGACCCTACTCGAGTCCCGATACCTGATCTTACAGAGCTCCAGGCAAGGGCAATAATCGTACGAGCGACAACACAAATGGAGGTCGAGAGAAGATTAACGACATGTCATATCAGTTCACCGAAGCAACGGGTGTCGATGAAGAGTGGGGCTAGCCCCTCCATGAGAAGATCGTTGCAAAGATTTCTTCAAAAGAGAAAGCATCGCATTCAAACACTTTCACCCTACTCTCACTAG

Protein sequence

MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRATTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH

Homology

[Close]

BLAST of Cp4.1LG20g05250 vs. ExPASy Swiss-Prot
Match: Q8LBM2 (Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.9e-04
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 0


Query: 6   NCNLELCLSPPSSSPSTATATANSTSTSCHN---HIDPTRVPI---------PDLTELQA 65
           NC+LEL L P S    ++  T+   STS  N   + +  R+ I          D+T LQA
Sbjct: 6   NCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQA 65

Query: 66  RAIIVRATTQMEVERRLTTCHISSPKQRVSMKSGASP----SMRRSLQRFLQKRKHRIQT 114
           R+II  A+ +M+   + ++     P +  S      P    SM++SLQ FLQKRK RIQ 
Sbjct: 66  RSIISIASREMKT--KSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIRIQA 125

[Close]

BLAST of Cp4.1LG20g05250 vs. NCBI nr
Match: XP_023520316.1 (protein TIFY 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220 bits (560), Expect = 5.04e-72
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRA 60
           MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRA
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRA 60

Query: 61  TTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115
           TTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH
Sbjct: 61  TTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of Cp4.1LG20g05250 vs. NCBI nr
Match: KAG7019513.1 (Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213 bits (543), Expect = 1.98e-69
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRA 60
           MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPD TELQARAIIVRA
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDHTELQARAIIVRA 60

Query: 61  TTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115
           TTQME ERRLTTCHISSP QRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH
Sbjct: 61  TTQMEAERRLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of Cp4.1LG20g05250 vs. NCBI nr
Match: KAG6583895.1 (Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210 bits (534), Expect = 4.66e-68
Identity = 110/115 (95.65%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRA 60
           MENILNCNLELCLSPPSSSPSTATATANS STSCHNHIDPTRVPIPD TELQARAIIVRA
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSMSTSCHNHIDPTRVPIPDHTELQARAIIVRA 60

Query: 61  TTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115
           TTQME ERRLTTCHISSP QRVSMKSGA+PSMRRSLQRFLQKRKHRIQTLSPYSH
Sbjct: 61  TTQMEAERRLTTCHISSPTQRVSMKSGANPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of Cp4.1LG20g05250 vs. NCBI nr
Match: XP_022927150.1 (protein TIFY 5A-like [Cucurbita moschata])

HSP 1 Score: 205 bits (522), Expect = 2.96e-66
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRA 60
           MENILNCNLELCLSPPSSSPSTATA  NSTSTSCHNHIDPTRVPIPD TELQARAIIVRA
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATA--NSTSTSCHNHIDPTRVPIPDHTELQARAIIVRA 60

Query: 61  TTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115
           TTQME ERRLTTCHISSP QRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH
Sbjct: 61  TTQMEAERRLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 113

[Close]

BLAST of Cp4.1LG20g05250 vs. NCBI nr
Match: XP_023001493.1 (protein TIFY 5A-like [Cucurbita maxima])

HSP 1 Score: 180 bits (457), Expect = 2.57e-56
Identity = 100/117 (85.47%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MENILNCNLELCLSPPSSSPSTAT--ATANSTSTSCHNHIDPTRVPIPDLTELQARAIIV 60
           MENILNCNLELCLSPPSSSPST    A ANSTSTSCHNH  PTRVP+ DLTELQARAIIV
Sbjct: 1   MENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNH--PTRVPLLDLTELQARAIIV 60

Query: 61  RATTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115
           RA TQME ERRLTTC+IS P + +SMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH
Sbjct: 61  RAITQMEAERRLTTCYISLPTEPMSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of Cp4.1LG20g05250 vs. ExPASy TrEMBL
Match: A0A6J1EN30 (protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 1.43e-66
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRA 60
           MENILNCNLELCLSPPSSSPSTATA  NSTSTSCHNHIDPTRVPIPD TELQARAIIVRA
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATA--NSTSTSCHNHIDPTRVPIPDHTELQARAIIVRA 60

Query: 61  TTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115
           TTQME ERRLTTCHISSP QRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH
Sbjct: 61  TTQMEAERRLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 113

[Close]

BLAST of Cp4.1LG20g05250 vs. ExPASy TrEMBL
Match: A0A6J1KQP6 (protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.25e-56
Identity = 100/117 (85.47%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MENILNCNLELCLSPPSSSPSTAT--ATANSTSTSCHNHIDPTRVPIPDLTELQARAIIV 60
           MENILNCNLELCLSPPSSSPST    A ANSTSTSCHNH  PTRVP+ DLTELQARAIIV
Sbjct: 1   MENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNH--PTRVPLLDLTELQARAIIV 60

Query: 61  RATTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115
           RA TQME ERRLTTC+IS P + +SMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH
Sbjct: 61  RAITQMEAERRLTTCYISLPTEPMSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of Cp4.1LG20g05250 vs. ExPASy TrEMBL
Match: A0A1S3BA64 (protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 3.72e-43
Identity = 87/120 (72.50%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MENILNCNLELCLSPPSSSPSTATAT----ANSTSTSCHNHIDPTRVPIPDLTELQARAI 60
           ME+  N NLELCLSPPSSSPST T T    A S S+S HNHI P  VP PDLTE+QA+AI
Sbjct: 1   MEHFPNFNLELCLSPPSSSPSTTTTTTTAAAASNSSSQHNHITPIGVPTPDLTEIQAKAI 60

Query: 61  IVRATTQMEVERRLTTCHISSPKQRVSMKSG-ASPSMRRSLQRFLQKRKHRIQTLSPYSH 115
           IV AT QME ERR TTC ISS  +RV M+SG ASPSMRRSLQRFLQKRK RIQTLSPY+H
Sbjct: 61  IVEATRQMEAERRWTTCRISSSAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLSPYTH 120

[Close]

BLAST of Cp4.1LG20g05250 vs. ExPASy TrEMBL
Match: A0A0A0LX13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 5.11e-36
Identity = 81/119 (68.07%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 1   MENILNCNLELCLSPPSSSPSTATATAN--STSTSCHNHIDPTRVPIPDLTELQARAIIV 60
           ME + N NLELCLSPPSSSPST T+T    S STS  NHI P  +  PDLTE+QA+AIIV
Sbjct: 1   MEPLSNFNLELCLSPPSSSPSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAKAIIV 60

Query: 61  RATTQMEVER-RLTTCHISSPKQRVSMKSG-ASPSMRRSLQRFLQKRKHRIQTLSPYSH 115
           +AT QME ER R  TC ISS  +RV M +G ASPS+RRSLQRFLQKRK RIQTLSPY+H
Sbjct: 61  QATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSPYAH 119

[Close]

BLAST of Cp4.1LG20g05250 vs. ExPASy TrEMBL
Match: A0A6J1CG02 (protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 4.40e-26
Identity = 67/118 (56.78%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 2   ENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPT-----RVPIPDLTELQARAI 61
           ++ L+CNLELCLSPP + PS+ATA A ST+TS  +H  P        P+ DLTELQARAI
Sbjct: 13  QHTLHCNLELCLSPPPAPPSSATA-AESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 72

Query: 62  IVRATTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114
           I+ AT QME   R TTC   S +++       S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 73  IIGATRQME--ERKTTCRTRSAEEK-------SSSMKRSLQRFLQKRKHRIQTLTPYT 120

[Close]

BLAST of Cp4.1LG20g05250 vs. TAIR 10
Match: AT1G30135.1 (jasmonate-zim-domain protein 8 )

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-05
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 0


Query: 6   NCNLELCLSPPSSSPSTATATANSTSTSCHN---HIDPTRVPI---------PDLTELQA 65
           NC+LEL L P S    ++  T+   STS  N   + +  R+ I          D+T LQA
Sbjct: 6   NCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQA 65

Query: 66  RAIIVRATTQMEVERRLTTCHISSPKQRVSMKSGASP----SMRRSLQRFLQKRKHRIQT 114
           R+II  A+ +M+   + ++     P +  S      P    SM++SLQ FLQKRK RIQ 
Sbjct: 66  RSIISIASREMKT--KSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIRIQA 125

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g05250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBM2	4.9e-04	36.29	Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1	[more]

BLAST of Cp4.1LG20g05250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520316.1	5.04e-72	100.00	protein TIFY 5A-like [Cucurbita pepo subsp. pepo]	[more]
KAG7019513.1	1.98e-69	97.39	Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6583895.1	4.66e-68	95.65	Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022927150.1	2.96e-66	95.65	protein TIFY 5A-like [Cucurbita moschata]	[more]
XP_023001493.1	2.57e-56	85.47	protein TIFY 5A-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG20g05250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EN30	1.43e-66	95.65	protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1	[more]
A0A6J1KQP6	1.25e-56	85.47	protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1	[more]
A0A1S3BA64	3.72e-43	72.50	protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1	[more]
A0A0A0LX13	5.11e-36	68.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1	[more]
A0A6J1CG02	4.40e-26	56.78	protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1	[more]

BLAST of Cp4.1LG20g05250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30135.1	3.5e-05	36.29	jasmonate-zim-domain protein 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	Jas_motif	coord: 93..114 e-value: 1.4E-9 score: 37.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..96
None	No IPR available	PANTHER	PTHR33077:SF99	SUBFAMILY NOT NAMED	coord: 6..115
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	PROTEIN TIFY 4A-RELATED-RELATED	coord: 6..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g05250.1	Cp4.1LG20g05250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031347	regulation of defense response
biological_process	GO:2000022	regulation of jasmonic acid mediated signaling pathway
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005634	nucleus