Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGTAAAGAGAGAAGATCGAGTGAATCGCTTTGTGAGAAGTCGATGTTGTTGCTTGCGAATTTAATCAAGCTTTCGAGCTCGATTTCTTTTGCTAATACGGCGAATGAAACAACCGCTGGAACTTCGGCGACGAGAGAGAGATCTGGCGGAAATTCAGCGGCGACGCCTCTGATTCCGGGAAGTAGACGGCTGCAGGAGCCGCAGAACCGAGCGAAACCGATCTACGTGACGAAGCCGGGCGGAGGCAGCTTCCAAATCAGCCATGGATCGCCAAGGTATTCGCCTTCTTCTTCTTCTTCTTCTTCTTCGAATGTGATTCACGGAGAGAGCGATTGTGATGAGGCGAATGTCGATGGTTGGGCCTCTAAGTACATAGAGAGAGTTCATAGGAACAGGAAGGATTTTGATCAATATCCGACGAACGAGAAGCCGTATTCAATGGGTAAAAATCGCCTTCGTACAGCCACTAGCTACGGTTTGGCCAGAATAAACCCCTAG
mRNA sequence
ATGATCGGTAAAGAGAGAAGATCGAGTGAATCGCTTTGTGAGAAGTCGATGTTGTTGCTTGCGAATTTAATCAAGCTTTCGAGCTCGATTTCTTTTGCTAATACGGCGAATGAAACAACCGCTGGAACTTCGGCGACGAGAGAGAGATCTGGCGGAAATTCAGCGGCGACGCCTCTGATTCCGGGAAGTAGACGGCTGCAGGAGCCGCAGAACCGAGCGAAACCGATCTACGTGACGAAGCCGGGCGGAGGCAGCTTCCAAATCAGCCATGGATCGCCAAGGTATTCGCCTTCTTCTTCTTCTTCTTCTTCTTCGAATGTGATTCACGGAGAGAGCGATTGTGATGAGGCGAATGTCGATGGTTGGGCCTCTAAGTACATAGAGAGAGTTCATAGGAACAGGAAGGATTTTGATCAATATCCGACGAACGAGAAGCCGTATTCAATGGGTAAAAATCGCCTTCGTACAGCCACTAGCTACGGTTTGGCCAGAATAAACCCCTAG
Coding sequence (CDS)
ATGATCGGTAAAGAGAGAAGATCGAGTGAATCGCTTTGTGAGAAGTCGATGTTGTTGCTTGCGAATTTAATCAAGCTTTCGAGCTCGATTTCTTTTGCTAATACGGCGAATGAAACAACCGCTGGAACTTCGGCGACGAGAGAGAGATCTGGCGGAAATTCAGCGGCGACGCCTCTGATTCCGGGAAGTAGACGGCTGCAGGAGCCGCAGAACCGAGCGAAACCGATCTACGTGACGAAGCCGGGCGGAGGCAGCTTCCAAATCAGCCATGGATCGCCAAGGTATTCGCCTTCTTCTTCTTCTTCTTCTTCTTCGAATGTGATTCACGGAGAGAGCGATTGTGATGAGGCGAATGTCGATGGTTGGGCCTCTAAGTACATAGAGAGAGTTCATAGGAACAGGAAGGATTTTGATCAATATCCGACGAACGAGAAGCCGTATTCAATGGGTAAAAATCGCCTTCGTACAGCCACTAGCTACGGTTTGGCCAGAATAAACCCCTAG
Protein sequence
MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLIPGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVDGWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP
Homology
BLAST of Cp4.1LG20g02110 vs. NCBI nr
Match:
XP_022923867.1 (uncharacterized protein LOC111431459 [Cucurbita moschata])
HSP 1 Score: 307 bits (787), Expect = 5.69e-105
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0
Query: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANE TAGTSATRERSGGNSAATPLI
Sbjct: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANEATAGTSATRERSGGNSAATPLI 60
Query: 61 PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
PGSRRLQEPQ+RAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSS NVI GESDCDEANVD
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSS-NVIPGESDCDEANVD 120
Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP 167
GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP
Sbjct: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP 166
BLAST of Cp4.1LG20g02110 vs. NCBI nr
Match:
KAG6584248.1 (hypothetical protein SDJN03_20180, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 301 bits (772), Expect = 1.06e-102
Identity = 160/167 (95.81%), Postives = 161/167 (96.41%), Query Frame = 0
Query: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
MIGKERRSSESLCEKSMLLLANLIKLSSSI FANTANE TAGTSATRERSGGNSAATPLI
Sbjct: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSIPFANTANEATAGTSATRERSGGNSAATPLI 60
Query: 61 PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
PGSRRLQEPQ+RAKPIYVTKPGGGSFQISHGSPRYSPSSSSSS NVI GESDCDEANVD
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSS--NVIPGESDCDEANVD 120
Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP 167
GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYG ARINP
Sbjct: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGSARINP 165
BLAST of Cp4.1LG20g02110 vs. NCBI nr
Match:
XP_023000854.1 (uncharacterized protein LOC111495176 [Cucurbita maxima])
HSP 1 Score: 278 bits (711), Expect = 2.05e-93
Identity = 149/161 (92.55%), Postives = 151/161 (93.79%), Query Frame = 0
Query: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
MIGKE RSSESLCEKSMLLLANLIKLSSSISFANTANE TAGTSATR+RSGGNSAATPLI
Sbjct: 1 MIGKEGRSSESLCEKSMLLLANLIKLSSSISFANTANEATAGTSATRQRSGGNSAATPLI 60
Query: 61 PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSS--NVIHGESDCDEAN 120
PGSRRLQEPQ+RAKPIYVTKPGG FQISHGSPRYSPSSSSSSSS NVIHGESDCDEAN
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGDGFQISHGSPRYSPSSSSSSSSSSNVIHGESDCDEAN 120
Query: 121 VDGWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
VDGWA KYIERVHRNRKDFDQYPTNEKPYSMGKNR R TS
Sbjct: 121 VDGWAYKYIERVHRNRKDFDQYPTNEKPYSMGKNRHRRVTS 161
BLAST of Cp4.1LG20g02110 vs. NCBI nr
Match:
XP_022954798.1 (uncharacterized protein LOC111456949 [Cucurbita moschata])
HSP 1 Score: 211 bits (536), Expect = 8.31e-67
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 0
Query: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
MIGKERRSSESLCEKSMLL+ANLIKLSSSISFA TANE TAG+ A +S GN A TPLI
Sbjct: 1 MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAGRQSRGNPATTPLI 60
Query: 61 PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
PGSRRLQEPQ+RAKPIYVTKPGGG FQI HGSPRYS S S SS +I ESD EANVD
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSLPSPSSYLIREESDFVEANVD 120
Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
GWAS+YIE+VH+NRK+ D+ T +KPYS+ ++RLR A+S
Sbjct: 121 GWASEYIEKVHKNRKNLDE-STAKKPYSIAESRLRRASS 158
BLAST of Cp4.1LG20g02110 vs. NCBI nr
Match:
XP_023541667.1 (uncharacterized protein LOC111801757 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 211 bits (536), Expect = 8.31e-67
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 0
Query: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
MIGKERRSSESLCEKSMLL+ANLIKLSSSISFA TANE TAG+ A +S GN A TPLI
Sbjct: 1 MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAVRQSRGNPATTPLI 60
Query: 61 PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
PGSRRLQEPQ+RAKPIYVTKPGGG FQI HGSPRYS SS S SS +I ESD EANVD
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSSPSPSSYLIREESDFIEANVD 120
Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
GWAS+YIE+VH+NRK+ D+ T +KPY + ++RLR A+S
Sbjct: 121 GWASEYIEKVHKNRKNLDE-STAKKPYPIAESRLRRASS 158
BLAST of Cp4.1LG20g02110 vs. ExPASy TrEMBL
Match:
A0A6J1E7B0 (uncharacterized protein LOC111431459 OS=Cucurbita moschata OX=3662 GN=LOC111431459 PE=4 SV=1)
HSP 1 Score: 307 bits (787), Expect = 2.75e-105
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0
Query: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANE TAGTSATRERSGGNSAATPLI
Sbjct: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANEATAGTSATRERSGGNSAATPLI 60
Query: 61 PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
PGSRRLQEPQ+RAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSS NVI GESDCDEANVD
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSS-NVIPGESDCDEANVD 120
Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP 167
GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP
Sbjct: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP 166
BLAST of Cp4.1LG20g02110 vs. ExPASy TrEMBL
Match:
A0A6J1KL49 (uncharacterized protein LOC111495176 OS=Cucurbita maxima OX=3661 GN=LOC111495176 PE=4 SV=1)
HSP 1 Score: 278 bits (711), Expect = 9.90e-94
Identity = 149/161 (92.55%), Postives = 151/161 (93.79%), Query Frame = 0
Query: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
MIGKE RSSESLCEKSMLLLANLIKLSSSISFANTANE TAGTSATR+RSGGNSAATPLI
Sbjct: 1 MIGKEGRSSESLCEKSMLLLANLIKLSSSISFANTANEATAGTSATRQRSGGNSAATPLI 60
Query: 61 PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSS--NVIHGESDCDEAN 120
PGSRRLQEPQ+RAKPIYVTKPGG FQISHGSPRYSPSSSSSSSS NVIHGESDCDEAN
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGDGFQISHGSPRYSPSSSSSSSSSSNVIHGESDCDEAN 120
Query: 121 VDGWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
VDGWA KYIERVHRNRKDFDQYPTNEKPYSMGKNR R TS
Sbjct: 121 VDGWAYKYIERVHRNRKDFDQYPTNEKPYSMGKNRHRRVTS 161
BLAST of Cp4.1LG20g02110 vs. ExPASy TrEMBL
Match:
A0A6J1GS37 (uncharacterized protein LOC111456949 OS=Cucurbita moschata OX=3662 GN=LOC111456949 PE=4 SV=1)
HSP 1 Score: 211 bits (536), Expect = 4.03e-67
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 0
Query: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
MIGKERRSSESLCEKSMLL+ANLIKLSSSISFA TANE TAG+ A +S GN A TPLI
Sbjct: 1 MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAGRQSRGNPATTPLI 60
Query: 61 PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
PGSRRLQEPQ+RAKPIYVTKPGGG FQI HGSPRYS S S SS +I ESD EANVD
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSLPSPSSYLIREESDFVEANVD 120
Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
GWAS+YIE+VH+NRK+ D+ T +KPYS+ ++RLR A+S
Sbjct: 121 GWASEYIEKVHKNRKNLDE-STAKKPYSIAESRLRRASS 158
BLAST of Cp4.1LG20g02110 vs. ExPASy TrEMBL
Match:
A0A5D3BLA2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003300 PE=4 SV=1)
HSP 1 Score: 210 bits (535), Expect = 5.71e-67
Identity = 120/160 (75.00%), Postives = 134/160 (83.75%), Query Frame = 0
Query: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTAN-ETTAGTSATRERSGGNSAATPL 60
MI KE RS+ESLCEKSMLL+ANLIKLSSSISFA TAN E TAG+ TR RSGGN AATPL
Sbjct: 1 MIRKESRSTESLCEKSMLLVANLIKLSSSISFAKTANNEATAGSPTTRRRSGGNPAATPL 60
Query: 61 IPGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANV 120
IPGS+RLQEPQ+RAKPIYVTKPGGG FQI HGSP SP S+SSSS+VI+ ESD DEANV
Sbjct: 61 IPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSP--SPRYSTSSSSSVIYEESDFDEANV 120
Query: 121 DGWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
DGWAS+YIE+VH+NRKDF+Q T +KP SM K+R R S
Sbjct: 121 DGWASEYIEKVHKNRKDFEQ-STMKKPKSMAKSRFRRTNS 157
BLAST of Cp4.1LG20g02110 vs. ExPASy TrEMBL
Match:
A0A0A0LTD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045720 PE=4 SV=1)
HSP 1 Score: 210 bits (534), Expect = 8.38e-67
Identity = 122/161 (75.78%), Postives = 135/161 (83.85%), Query Frame = 0
Query: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTAN-ETTAGTSAT-RERSGGNSAATP 60
MIGKE RS+ESLCEKSMLL+ANLIKLSSSISFA TAN E TAG+S T R RSGGN AATP
Sbjct: 1 MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP 60
Query: 61 LIPGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEAN 120
LIPGS+RLQEPQ+RAKPIYVTKPGGG FQI HGSP SP SSSSSS+VI+ ESD DE N
Sbjct: 61 LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSP--SPRYSSSSSSSVIYEESDFDEGN 120
Query: 121 VDGWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
VDGWAS+YIE+VH+NRKDF+Q T +KP SM K+R R S
Sbjct: 121 VDGWASEYIEKVHKNRKDFEQ-STMKKPKSMAKSRFRRTNS 158
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_022923867.1 | 5.69e-105 | 97.60 | uncharacterized protein LOC111431459 [Cucurbita moschata] | [more] |
KAG6584248.1 | 1.06e-102 | 95.81 | hypothetical protein SDJN03_20180, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023000854.1 | 2.05e-93 | 92.55 | uncharacterized protein LOC111495176 [Cucurbita maxima] | [more] |
XP_022954798.1 | 8.31e-67 | 73.58 | uncharacterized protein LOC111456949 [Cucurbita moschata] | [more] |
XP_023541667.1 | 8.31e-67 | 73.58 | uncharacterized protein LOC111801757 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1E7B0 | 2.75e-105 | 97.60 | uncharacterized protein LOC111431459 OS=Cucurbita moschata OX=3662 GN=LOC1114314... | [more] |
A0A6J1KL49 | 9.90e-94 | 92.55 | uncharacterized protein LOC111495176 OS=Cucurbita maxima OX=3661 GN=LOC111495176... | [more] |
A0A6J1GS37 | 4.03e-67 | 73.58 | uncharacterized protein LOC111456949 OS=Cucurbita moschata OX=3662 GN=LOC1114569... | [more] |
A0A5D3BLA2 | 5.71e-67 | 75.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LTD3 | 8.38e-67 | 75.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045720 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |