Cp4.1LG20g02110 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g02110
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG20: 1227196 .. 1227699 (+)
RNA-Seq ExpressionCp4.1LG20g02110
SyntenyCp4.1LG20g02110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGTAAAGAGAGAAGATCGAGTGAATCGCTTTGTGAGAAGTCGATGTTGTTGCTTGCGAATTTAATCAAGCTTTCGAGCTCGATTTCTTTTGCTAATACGGCGAATGAAACAACCGCTGGAACTTCGGCGACGAGAGAGAGATCTGGCGGAAATTCAGCGGCGACGCCTCTGATTCCGGGAAGTAGACGGCTGCAGGAGCCGCAGAACCGAGCGAAACCGATCTACGTGACGAAGCCGGGCGGAGGCAGCTTCCAAATCAGCCATGGATCGCCAAGGTATTCGCCTTCTTCTTCTTCTTCTTCTTCTTCGAATGTGATTCACGGAGAGAGCGATTGTGATGAGGCGAATGTCGATGGTTGGGCCTCTAAGTACATAGAGAGAGTTCATAGGAACAGGAAGGATTTTGATCAATATCCGACGAACGAGAAGCCGTATTCAATGGGTAAAAATCGCCTTCGTACAGCCACTAGCTACGGTTTGGCCAGAATAAACCCCTAG

mRNA sequence

ATGATCGGTAAAGAGAGAAGATCGAGTGAATCGCTTTGTGAGAAGTCGATGTTGTTGCTTGCGAATTTAATCAAGCTTTCGAGCTCGATTTCTTTTGCTAATACGGCGAATGAAACAACCGCTGGAACTTCGGCGACGAGAGAGAGATCTGGCGGAAATTCAGCGGCGACGCCTCTGATTCCGGGAAGTAGACGGCTGCAGGAGCCGCAGAACCGAGCGAAACCGATCTACGTGACGAAGCCGGGCGGAGGCAGCTTCCAAATCAGCCATGGATCGCCAAGGTATTCGCCTTCTTCTTCTTCTTCTTCTTCTTCGAATGTGATTCACGGAGAGAGCGATTGTGATGAGGCGAATGTCGATGGTTGGGCCTCTAAGTACATAGAGAGAGTTCATAGGAACAGGAAGGATTTTGATCAATATCCGACGAACGAGAAGCCGTATTCAATGGGTAAAAATCGCCTTCGTACAGCCACTAGCTACGGTTTGGCCAGAATAAACCCCTAG

Coding sequence (CDS)

ATGATCGGTAAAGAGAGAAGATCGAGTGAATCGCTTTGTGAGAAGTCGATGTTGTTGCTTGCGAATTTAATCAAGCTTTCGAGCTCGATTTCTTTTGCTAATACGGCGAATGAAACAACCGCTGGAACTTCGGCGACGAGAGAGAGATCTGGCGGAAATTCAGCGGCGACGCCTCTGATTCCGGGAAGTAGACGGCTGCAGGAGCCGCAGAACCGAGCGAAACCGATCTACGTGACGAAGCCGGGCGGAGGCAGCTTCCAAATCAGCCATGGATCGCCAAGGTATTCGCCTTCTTCTTCTTCTTCTTCTTCTTCGAATGTGATTCACGGAGAGAGCGATTGTGATGAGGCGAATGTCGATGGTTGGGCCTCTAAGTACATAGAGAGAGTTCATAGGAACAGGAAGGATTTTGATCAATATCCGACGAACGAGAAGCCGTATTCAATGGGTAAAAATCGCCTTCGTACAGCCACTAGCTACGGTTTGGCCAGAATAAACCCCTAG

Protein sequence

MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLIPGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVDGWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP
Homology
BLAST of Cp4.1LG20g02110 vs. NCBI nr
Match: XP_022923867.1 (uncharacterized protein LOC111431459 [Cucurbita moschata])

HSP 1 Score: 307 bits (787), Expect = 5.69e-105
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0

Query: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
           MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANE TAGTSATRERSGGNSAATPLI
Sbjct: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANEATAGTSATRERSGGNSAATPLI 60

Query: 61  PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
           PGSRRLQEPQ+RAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSS NVI GESDCDEANVD
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSS-NVIPGESDCDEANVD 120

Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP 167
           GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP
Sbjct: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP 166

BLAST of Cp4.1LG20g02110 vs. NCBI nr
Match: KAG6584248.1 (hypothetical protein SDJN03_20180, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 301 bits (772), Expect = 1.06e-102
Identity = 160/167 (95.81%), Postives = 161/167 (96.41%), Query Frame = 0

Query: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
           MIGKERRSSESLCEKSMLLLANLIKLSSSI FANTANE TAGTSATRERSGGNSAATPLI
Sbjct: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSIPFANTANEATAGTSATRERSGGNSAATPLI 60

Query: 61  PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
           PGSRRLQEPQ+RAKPIYVTKPGGGSFQISHGSPRYSPSSSSSS  NVI GESDCDEANVD
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSS--NVIPGESDCDEANVD 120

Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP 167
           GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYG ARINP
Sbjct: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGSARINP 165

BLAST of Cp4.1LG20g02110 vs. NCBI nr
Match: XP_023000854.1 (uncharacterized protein LOC111495176 [Cucurbita maxima])

HSP 1 Score: 278 bits (711), Expect = 2.05e-93
Identity = 149/161 (92.55%), Postives = 151/161 (93.79%), Query Frame = 0

Query: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
           MIGKE RSSESLCEKSMLLLANLIKLSSSISFANTANE TAGTSATR+RSGGNSAATPLI
Sbjct: 1   MIGKEGRSSESLCEKSMLLLANLIKLSSSISFANTANEATAGTSATRQRSGGNSAATPLI 60

Query: 61  PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSS--NVIHGESDCDEAN 120
           PGSRRLQEPQ+RAKPIYVTKPGG  FQISHGSPRYSPSSSSSSSS  NVIHGESDCDEAN
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGDGFQISHGSPRYSPSSSSSSSSSSNVIHGESDCDEAN 120

Query: 121 VDGWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
           VDGWA KYIERVHRNRKDFDQYPTNEKPYSMGKNR R  TS
Sbjct: 121 VDGWAYKYIERVHRNRKDFDQYPTNEKPYSMGKNRHRRVTS 161

BLAST of Cp4.1LG20g02110 vs. NCBI nr
Match: XP_022954798.1 (uncharacterized protein LOC111456949 [Cucurbita moschata])

HSP 1 Score: 211 bits (536), Expect = 8.31e-67
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 0

Query: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
           MIGKERRSSESLCEKSMLL+ANLIKLSSSISFA TANE TAG+ A   +S GN A TPLI
Sbjct: 1   MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAGRQSRGNPATTPLI 60

Query: 61  PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
           PGSRRLQEPQ+RAKPIYVTKPGGG FQI HGSPRYS  S  S SS +I  ESD  EANVD
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSLPSPSSYLIREESDFVEANVD 120

Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
           GWAS+YIE+VH+NRK+ D+  T +KPYS+ ++RLR A+S
Sbjct: 121 GWASEYIEKVHKNRKNLDE-STAKKPYSIAESRLRRASS 158

BLAST of Cp4.1LG20g02110 vs. NCBI nr
Match: XP_023541667.1 (uncharacterized protein LOC111801757 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211 bits (536), Expect = 8.31e-67
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 0

Query: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
           MIGKERRSSESLCEKSMLL+ANLIKLSSSISFA TANE TAG+ A   +S GN A TPLI
Sbjct: 1   MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAVRQSRGNPATTPLI 60

Query: 61  PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
           PGSRRLQEPQ+RAKPIYVTKPGGG FQI HGSPRYS  SS S SS +I  ESD  EANVD
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSSPSPSSYLIREESDFIEANVD 120

Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
           GWAS+YIE+VH+NRK+ D+  T +KPY + ++RLR A+S
Sbjct: 121 GWASEYIEKVHKNRKNLDE-STAKKPYPIAESRLRRASS 158

BLAST of Cp4.1LG20g02110 vs. ExPASy TrEMBL
Match: A0A6J1E7B0 (uncharacterized protein LOC111431459 OS=Cucurbita moschata OX=3662 GN=LOC111431459 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 2.75e-105
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0

Query: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
           MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANE TAGTSATRERSGGNSAATPLI
Sbjct: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANEATAGTSATRERSGGNSAATPLI 60

Query: 61  PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
           PGSRRLQEPQ+RAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSS NVI GESDCDEANVD
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSS-NVIPGESDCDEANVD 120

Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP 167
           GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP
Sbjct: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATSYGLARINP 166

BLAST of Cp4.1LG20g02110 vs. ExPASy TrEMBL
Match: A0A6J1KL49 (uncharacterized protein LOC111495176 OS=Cucurbita maxima OX=3661 GN=LOC111495176 PE=4 SV=1)

HSP 1 Score: 278 bits (711), Expect = 9.90e-94
Identity = 149/161 (92.55%), Postives = 151/161 (93.79%), Query Frame = 0

Query: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
           MIGKE RSSESLCEKSMLLLANLIKLSSSISFANTANE TAGTSATR+RSGGNSAATPLI
Sbjct: 1   MIGKEGRSSESLCEKSMLLLANLIKLSSSISFANTANEATAGTSATRQRSGGNSAATPLI 60

Query: 61  PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSS--NVIHGESDCDEAN 120
           PGSRRLQEPQ+RAKPIYVTKPGG  FQISHGSPRYSPSSSSSSSS  NVIHGESDCDEAN
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGDGFQISHGSPRYSPSSSSSSSSSSNVIHGESDCDEAN 120

Query: 121 VDGWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
           VDGWA KYIERVHRNRKDFDQYPTNEKPYSMGKNR R  TS
Sbjct: 121 VDGWAYKYIERVHRNRKDFDQYPTNEKPYSMGKNRHRRVTS 161

BLAST of Cp4.1LG20g02110 vs. ExPASy TrEMBL
Match: A0A6J1GS37 (uncharacterized protein LOC111456949 OS=Cucurbita moschata OX=3662 GN=LOC111456949 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 4.03e-67
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 0

Query: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANETTAGTSATRERSGGNSAATPLI 60
           MIGKERRSSESLCEKSMLL+ANLIKLSSSISFA TANE TAG+ A   +S GN A TPLI
Sbjct: 1   MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAGRQSRGNPATTPLI 60

Query: 61  PGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANVD 120
           PGSRRLQEPQ+RAKPIYVTKPGGG FQI HGSPRYS  S  S SS +I  ESD  EANVD
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSLPSPSSYLIREESDFVEANVD 120

Query: 121 GWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
           GWAS+YIE+VH+NRK+ D+  T +KPYS+ ++RLR A+S
Sbjct: 121 GWASEYIEKVHKNRKNLDE-STAKKPYSIAESRLRRASS 158

BLAST of Cp4.1LG20g02110 vs. ExPASy TrEMBL
Match: A0A5D3BLA2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003300 PE=4 SV=1)

HSP 1 Score: 210 bits (535), Expect = 5.71e-67
Identity = 120/160 (75.00%), Postives = 134/160 (83.75%), Query Frame = 0

Query: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTAN-ETTAGTSATRERSGGNSAATPL 60
           MI KE RS+ESLCEKSMLL+ANLIKLSSSISFA TAN E TAG+  TR RSGGN AATPL
Sbjct: 1   MIRKESRSTESLCEKSMLLVANLIKLSSSISFAKTANNEATAGSPTTRRRSGGNPAATPL 60

Query: 61  IPGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEANV 120
           IPGS+RLQEPQ+RAKPIYVTKPGGG FQI HGSP  SP  S+SSSS+VI+ ESD DEANV
Sbjct: 61  IPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSP--SPRYSTSSSSSVIYEESDFDEANV 120

Query: 121 DGWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
           DGWAS+YIE+VH+NRKDF+Q  T +KP SM K+R R   S
Sbjct: 121 DGWASEYIEKVHKNRKDFEQ-STMKKPKSMAKSRFRRTNS 157

BLAST of Cp4.1LG20g02110 vs. ExPASy TrEMBL
Match: A0A0A0LTD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045720 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 8.38e-67
Identity = 122/161 (75.78%), Postives = 135/161 (83.85%), Query Frame = 0

Query: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTAN-ETTAGTSAT-RERSGGNSAATP 60
           MIGKE RS+ESLCEKSMLL+ANLIKLSSSISFA TAN E TAG+S T R RSGGN AATP
Sbjct: 1   MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP 60

Query: 61  LIPGSRRLQEPQNRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSSNVIHGESDCDEAN 120
           LIPGS+RLQEPQ+RAKPIYVTKPGGG FQI HGSP  SP  SSSSSS+VI+ ESD DE N
Sbjct: 61  LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSP--SPRYSSSSSSSVIYEESDFDEGN 120

Query: 121 VDGWASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 159
           VDGWAS+YIE+VH+NRKDF+Q  T +KP SM K+R R   S
Sbjct: 121 VDGWASEYIEKVHKNRKDFEQ-STMKKPKSMAKSRFRRTNS 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022923867.15.69e-10597.60uncharacterized protein LOC111431459 [Cucurbita moschata][more]
KAG6584248.11.06e-10295.81hypothetical protein SDJN03_20180, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023000854.12.05e-9392.55uncharacterized protein LOC111495176 [Cucurbita maxima][more]
XP_022954798.18.31e-6773.58uncharacterized protein LOC111456949 [Cucurbita moschata][more]
XP_023541667.18.31e-6773.58uncharacterized protein LOC111801757 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1E7B02.75e-10597.60uncharacterized protein LOC111431459 OS=Cucurbita moschata OX=3662 GN=LOC1114314... [more]
A0A6J1KL499.90e-9492.55uncharacterized protein LOC111495176 OS=Cucurbita maxima OX=3661 GN=LOC111495176... [more]
A0A6J1GS374.03e-6773.58uncharacterized protein LOC111456949 OS=Cucurbita moschata OX=3662 GN=LOC1114569... [more]
A0A5D3BLA25.71e-6775.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTD38.38e-6775.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045720 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g02110.1Cp4.1LG20g02110.1mRNA